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authorBonfaceKilz2021-04-30 13:06:58 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commit4e65b73a0f903834f8dbd02d11c49b75d7c935c7 (patch)
tree18add06933583233d183e5554fda91a4a46e8191 /wqflask/tests/unit
parent114e7d3395f28ddead0ff3a94c10d0bf534fb493 (diff)
downloadgenenetwork2-4e65b73a0f903834f8dbd02d11c49b75d7c935c7.tar.gz
autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133
Diffstat (limited to 'wqflask/tests/unit')
-rw-r--r--wqflask/tests/unit/base/test_webqtl_case_data.py8
-rw-r--r--wqflask/tests/unit/wqflask/api/test_correlation.py4
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py14
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py2
-rw-r--r--wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py2
-rw-r--r--wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py12
-rw-r--r--wqflask/tests/unit/wqflask/test_server_side.py2
7 files changed, 22 insertions, 22 deletions
diff --git a/wqflask/tests/unit/base/test_webqtl_case_data.py b/wqflask/tests/unit/base/test_webqtl_case_data.py
index cebd41ce..e1555cb4 100644
--- a/wqflask/tests/unit/base/test_webqtl_case_data.py
+++ b/wqflask/tests/unit/base/test_webqtl_case_data.py
@@ -10,10 +10,10 @@ class TestWebqtlCaseData(unittest.TestCase):
def setUp(self):
self.w = webqtlCaseData(name="Test",
- value=0,
- variance=0.0,
- num_cases=10,
- name2="Test2")
+ value=0,
+ variance=0.0,
+ num_cases=10,
+ name2="Test2")
def test_webqtl_case_data_repr(self):
self.assertEqual(
diff --git a/wqflask/tests/unit/wqflask/api/test_correlation.py b/wqflask/tests/unit/wqflask/api/test_correlation.py
index 34ffa9ef..1089a36f 100644
--- a/wqflask/tests/unit/wqflask/api/test_correlation.py
+++ b/wqflask/tests/unit/wqflask/api/test_correlation.py
@@ -106,9 +106,9 @@ class TestCorrelations(unittest.TestCase):
target_vals = [3.4, 6.2, 4.1, 3.4, 1.2, 5.6]
trait_data = {"S1": AttributeSetter({"value": 2.3}), "S2": AttributeSetter({"value": 1.1}),
- "S3": AttributeSetter(
+ "S3": AttributeSetter(
{"value": 6.3}), "S4": AttributeSetter({"value": 3.6}), "S5": AttributeSetter({"value": 4.1}),
- "S6": AttributeSetter({"value": 5.0})}
+ "S6": AttributeSetter({"value": 5.0})}
this_trait = AttributeSetter({"data": trait_data})
mock_normalize.return_value = ([2.3, 1.1, 6.3, 3.6, 4.1, 5.0],
[3.4, 6.2, 4.1, 3.4, 1.2, 5.6], 6)
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
index 5cbaf0e0..4003d68f 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
@@ -162,13 +162,13 @@ X\tM5\t12\tQ\tE\tMMB\tR\t21.1\tW\t0.65\t0.6"""
results = parse_loco_output(
this_dataset={}, gwa_output_filename=".xw/")
expected_results = [
- {'name': 'M1', 'chr': 'X/Y', 'Mb': 2.8457155e-05, 'p_value': 0.85,
- 'additive': 23.3, 'lod_score': 0.07058107428570727},
- {'name': 'M2', 'chr': 4, 'Mb': 1.2e-05, 'p_value': 0.5,
- 'additive': 24.0, 'lod_score': 0.3010299956639812},
- {'name': 'M4', 'chr': 'Y', 'Mb': 1.2e-05, 'p_value': 0.7,
- 'additive': 11.6, 'lod_score': 0.1549019599857432},
- {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': 21.1, 'lod_score': 0.22184874961635637}]
+ {'name': 'M1', 'chr': 'X/Y', 'Mb': 2.8457155e-05, 'p_value': 0.85,
+ 'additive': 23.3, 'lod_score': 0.07058107428570727},
+ {'name': 'M2', 'chr': 4, 'Mb': 1.2e-05, 'p_value': 0.5,
+ 'additive': 24.0, 'lod_score': 0.3010299956639812},
+ {'name': 'M4', 'chr': 'Y', 'Mb': 1.2e-05, 'p_value': 0.7,
+ 'additive': 11.6, 'lod_score': 0.1549019599857432},
+ {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': 21.1, 'lod_score': 0.22184874961635637}]
self.assertEqual(expected_results, results)
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py
index 47377873..93848a84 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_qtlreaper_mapping.py
@@ -18,6 +18,6 @@ class TestQtlReaperMapping(unittest.TestCase):
mock_open.assert_called_once_with("/home/user/data/gn2/trait_file.txt", "w")
filehandler = mock_open()
write_calls = [mock.call('Trait\t'), mock.call(
- 'S1\tS3\tS4\n'), mock.call('T1\t'), mock.call('V1\tV4\tV3')]
+ 'S1\tS3\tS4\n'), mock.call('T1\t'), mock.call('V1\tV4\tV3')]
filehandler.write.assert_has_calls(write_calls)
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
index e518ec22..68686e27 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py
@@ -21,7 +21,7 @@ class TestRqtlMapping(unittest.TestCase):
"""test for getting trait data_type return True"""
query_value = """SELECT value FROM TraitMetadata WHERE type='trait_data_type'"""
mock_db.db.execute.return_value.fetchone.return_value = [
- """{"type":"trait_data_type","name":"T1","traid_id":"fer434f"}"""]
+ """{"type":"trait_data_type","name":"T1","traid_id":"fer434f"}"""]
results = get_trait_data_type("traid_id")
mock_db.db.execute.assert_called_with(query_value)
self.assertEqual(results, "fer434f")
diff --git a/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py b/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py
index 8823e1fc..89442c47 100644
--- a/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py
+++ b/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py
@@ -22,10 +22,10 @@ class TestSnpBrowser(unittest.TestCase):
strains = {"mouse": ["S1", "S2", "S3", "S4", "S5"], "rat": []}
expected_results = ([['Index', 'SNP ID', 'Chr', 'Mb', 'Alleles', 'ConScore',
'Domain 1', 'Domain 2', 'Details'],
- ['S1', 'S2', 'S3', 'S4', 'S5']], 5,
- ['index', 'snp_name', 'chr', 'mb_formatted', 'alleles',
- 'conservation_score', 'domain_1', 'domain_2',
- 'function_details', 'S1', 'S2', 'S3', 'S4', 'S5'])
+ ['S1', 'S2', 'S3', 'S4', 'S5']], 5,
+ ['index', 'snp_name', 'chr', 'mb_formatted', 'alleles',
+ 'conservation_score', 'domain_1', 'domain_2',
+ 'function_details', 'S1', 'S2', 'S3', 'S4', 'S5'])
results_with_snp = get_header_list(
variant_type="SNP", strains=strains, species="Mouse", empty_columns=empty_columns)
@@ -34,8 +34,8 @@ class TestSnpBrowser(unittest.TestCase):
expected_results_with_indel = (
['Index', 'ID', 'Type', 'InDel Chr', 'Mb Start',
'Mb End', 'Strand', 'Size', 'Sequence', 'Source'], 0,
- ['index', 'indel_name', 'indel_type', 'indel_chr', 'indel_mb_s',
- 'indel_mb_e', 'indel_strand', 'indel_size', 'indel_sequence', 'source_name'])
+ ['index', 'indel_name', 'indel_type', 'indel_chr', 'indel_mb_s',
+ 'indel_mb_e', 'indel_strand', 'indel_size', 'indel_sequence', 'source_name'])
self.assertEqual(expected_results, results_with_snp)
self.assertEqual(expected_results_with_indel, results_with_indel)
diff --git a/wqflask/tests/unit/wqflask/test_server_side.py b/wqflask/tests/unit/wqflask/test_server_side.py
index 9d988aea..be7ca2df 100644
--- a/wqflask/tests/unit/wqflask/test_server_side.py
+++ b/wqflask/tests/unit/wqflask/test_server_side.py
@@ -23,7 +23,7 @@ class TestServerSideTableTests(unittest.TestCase):
]
headers = ['first', 'second', 'third']
request_args = {'sEcho': '1', 'iSortCol_0': '1', 'iSortingCols': '1',
- 'sSortDir_0': 'asc', 'iDisplayStart': '0', 'iDisplayLength': '3'}
+ 'sSortDir_0': 'asc', 'iDisplayStart': '0', 'iDisplayLength': '3'}
test_page = ServerSideTable(
rows_count, table_rows, headers, request_args).get_page()