Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.

1 files changed, 0 insertions, 192 deletions

diff --git a/wqflask/tests/unit/utility/test_authentication_tools.py b/wqflask/tests/unit/utility/test_authentication_tools.py
deleted file mode 100644
index fb8de292..00000000
--- a/wqflask/tests/unit/utility/test_authentication_tools.py
+++ /dev/null
@@ -1,192 +0,0 @@
-"""Tests for authentication tools"""
-import unittest
-from unittest import mock
-
-from utility.authentication_tools import check_resource_availability
-from utility.authentication_tools import add_new_resource
-
-
-class TestResponse:
-    """Mock Test Response after a request"""
-    @property
-    def content(self):
-        """Mock the content from Requests.get(params).content"""
-        return '["foo"]'
-
-
-class TestUser:
-    """Mock user"""
-    @property
-    def user_id(self):
-        """Mockes user id. Used in Flask.g.user_session.user_id"""
-        return b"Jane"
-
-user_id = b"Jane"
-
-
-class TestUserSession:
-    """Mock user session"""
-    @property
-    def user_session(self):
-        """Mock user session. Mocks Flask.g.user_session object"""
-        return TestUser()
-
-
-def mock_add_resource(resource_ob, update=False):
-    return resource_ob
-
-
-class TestCheckResourceAvailability(unittest.TestCase):
-    """Test methods related to checking the resource availability"""
-    @mock.patch('utility.authentication_tools.add_new_resource')
-    @mock.patch('utility.authentication_tools.Redis')
-    @mock.patch('utility.authentication_tools.g', TestUserSession())
-    @mock.patch('utility.authentication_tools.get_resource_id')
-    def test_check_resource_availability_default_mask(
-            self,
-            resource_id_mock,
-            redis_mock,
-            add_new_resource_mock):
-        """Test the resource availability with default mask"""
-
-        resource_id_mock.return_value = 1
-        redis_mock.smembers.return_value = []
-        test_dataset = mock.MagicMock()
-        type(test_dataset).type = mock.PropertyMock(return_value="Test")
-        add_new_resource_mock.return_value = {"default_mask": 2}
-        self.assertEqual(check_resource_availability(test_dataset, user_id), 2)
-
-    @mock.patch('utility.authentication_tools.requests.get')
-    @mock.patch('utility.authentication_tools.add_new_resource')
-    @mock.patch('utility.authentication_tools.Redis')
-    @mock.patch('utility.authentication_tools.g', TestUserSession())
-    @mock.patch('utility.authentication_tools.get_resource_id')
-    def test_check_resource_availability_non_default_mask(
-            self,
-            resource_id_mock,
-            redis_mock,
-            add_new_resource_mock,
-            requests_mock):
-        """Test the resource availability with non-default mask"""
-        resource_id_mock.return_value = 1
-        redis_mock.smembers.return_value = []
-        add_new_resource_mock.return_value = {"default_mask": 2}
-        requests_mock.return_value = TestResponse()
-        test_dataset = mock.MagicMock()
-        type(test_dataset).type = mock.PropertyMock(return_value="Test")
-        self.assertEqual(check_resource_availability(test_dataset, user_id),
-                         ['foo'])
-
-    @mock.patch('utility.authentication_tools.webqtlConfig.SUPER_PRIVILEGES',
-                "SUPERUSER")
-    @mock.patch('utility.authentication_tools.requests.get')
-    @mock.patch('utility.authentication_tools.add_new_resource')
-    @mock.patch('utility.authentication_tools.Redis')
-    @mock.patch('utility.authentication_tools.g', TestUserSession())
-    @mock.patch('utility.authentication_tools.get_resource_id')
-    def test_check_resource_availability_of_super_user(
-            self,
-            resource_id_mock,
-            redis_mock,
-            add_new_resource_mock,
-            requests_mock):
-        """Test the resource availability if the user is the super user"""
-        resource_id_mock.return_value = 1
-        redis_mock.smembers.return_value = [b"Jane"]
-        add_new_resource_mock.return_value = {"default_mask": 2}
-        requests_mock.return_value = TestResponse()
-        test_dataset = mock.MagicMock()
-        type(test_dataset).type = mock.PropertyMock(return_value="Test")
-        self.assertEqual(check_resource_availability(test_dataset, user_id),
-                         "SUPERUSER")
-
-    @mock.patch('utility.authentication_tools.webqtlConfig.DEFAULT_PRIVILEGES',
-                "John Doe")
-    def test_check_resource_availability_string_dataset(self):
-        """Test the resource availability if the dataset is a string"""
-        self.assertEqual(check_resource_availability("Test", user_id),
-                         "John Doe")
-
-    @mock.patch('utility.authentication_tools.webqtlConfig.DEFAULT_PRIVILEGES',
-                "John Doe")
-    def test_check_resource_availability_temp(self):
-        """Test the resource availability if the dataset is a string"""
-        test_dataset = mock.MagicMock()
-        type(test_dataset).type = mock.PropertyMock(return_value="Temp")
-        self.assertEqual(check_resource_availability(test_dataset, user_id),
-                         "John Doe")
-
-
-class TestAddNewResource(unittest.TestCase):
-    """Test cases for add_new_resource method"""
-    @mock.patch('utility.authentication_tools.webqtlConfig.DEFAULT_PRIVILEGES',
-                "John Doe")
-    @mock.patch('utility.authentication_tools.add_resource', mock_add_resource)
-    @mock.patch('utility.authentication_tools.get_group_code')
-    def test_add_new_resource_if_publish_datatype(self, group_code_mock):
-        """Test add_new_resource if dataset type is 'publish'"""
-        group_code_mock.return_value = "Test"
-        test_dataset = mock.MagicMock()
-        type(test_dataset).type = mock.PropertyMock(return_value="Publish")
-        type(test_dataset).id = mock.PropertyMock(return_value=10)
-        expected_value = {
-            "owner_id": "none",
-            "default_mask": "John Doe",
-            "group_masks": {},
-            "name": "Test_None",
-            "data": {
-                "dataset": 10,
-                "trait": None
-            },
-            "type": "dataset-publish"
-        }
-        self.assertEqual(add_new_resource(test_dataset),
-                         expected_value)
-
-    @mock.patch('utility.authentication_tools.webqtlConfig.DEFAULT_PRIVILEGES',
-                "John Doe")
-    @mock.patch('utility.authentication_tools.add_resource', mock_add_resource)
-    @mock.patch('utility.authentication_tools.get_group_code')
-    def test_add_new_resource_if_geno_datatype(self, group_code_mock):
-        """Test add_new_resource if dataset type is 'geno'"""
-        group_code_mock.return_value = "Test"
-        test_dataset = mock.MagicMock()
-        type(test_dataset).name = mock.PropertyMock(return_value="Geno")
-        type(test_dataset).type = mock.PropertyMock(return_value="Geno")
-        type(test_dataset).id = mock.PropertyMock(return_value=20)
-        expected_value = {
-            "owner_id": "none",
-            "default_mask": "John Doe",
-            "group_masks": {},
-            "name": "Geno",
-            "data": {
-                "dataset": 20,
-            },
-            "type": "dataset-geno"
-        }
-        self.assertEqual(add_new_resource(test_dataset),
-                         expected_value)
-
-    @mock.patch('utility.authentication_tools.webqtlConfig.DEFAULT_PRIVILEGES',
-                "John Doe")
-    @mock.patch('utility.authentication_tools.add_resource', mock_add_resource)
-    @mock.patch('utility.authentication_tools.get_group_code')
-    def test_add_new_resource_if_other_datatype(self, group_code_mock):
-        """Test add_new_resource if dataset type is not 'geno' or 'publish'"""
-        group_code_mock.return_value = "Test"
-        test_dataset = mock.MagicMock()
-        type(test_dataset).name = mock.PropertyMock(return_value="Geno")
-        type(test_dataset).type = mock.PropertyMock(return_value="other")
-        type(test_dataset).id = mock.PropertyMock(return_value=20)
-        expected_value = {
-            "owner_id": "none",
-            "default_mask": "John Doe",
-            "group_masks": {},
-            "name": "Geno",
-            "data": {
-                "dataset": 20,
-            },
-            "type": "dataset-probeset"
-        }
-        self.assertEqual(add_new_resource(test_dataset),
-                         expected_value)