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authorZachary Sloan2014-05-05 17:09:24 +0000
committerZachary Sloan2014-05-05 17:09:24 +0000
commit759a7a23b0ea848b8c8ffe2804841322254d8696 (patch)
treef2994e8228c96cb8dbf39e69a34dedf65acc6f14 /wqflask/output/HLC_output1.log.txt
parentd2454fe1306b298d5b7a4dd349a4f26ebc7307a2 (diff)
downloadgenenetwork2-759a7a23b0ea848b8c8ffe2804841322254d8696.tar.gz
Committing a bunch of changes related to integrating GEMMA and
adding the correlation matrix page
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+##
+## GEMMA Version = 0.94
+##
+## Command Line Input = -bfile /home/zas1024/gene/web/gemma/HLC -k ../web/gemma/output_HLC.cXX.txt -lmm 1 -o HLC_output1
+##
+## Summary Statistics:
+## number of total individuals = 427
+## number of analyzed individuals = 427
+## number of covariates = 1
+## number of phenotypes = 1
+## number of total SNPs = 358499
+## number of analyzed SNPs = 273349
+## REMLE log-likelihood in the null model = -3657.8
+## MLE log-likelihood in the null model = -3665.89
+## pve estimate in the null model = 3.30749e-06
+## se(pve) in the null model = nan
+## vg estimate in the null model = 16.8101
+## ve estimate in the null model = 1.68101e+06
+## beta estimate in the null model = 890.587
+## se(beta) = 62.7439
+##
+## Computation Time:
+## total computation time = 1.857 min
+## computation time break down:
+## time on eigen-decomposition = 0.0015 min
+## time on calculating UtX = 0.406 min
+## time on optimization = 1.30517 min
+##