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author | Pjotr Prins | 2016-06-17 06:48:01 +0000 |
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committer | Pjotr Prins | 2016-06-17 06:48:01 +0000 |
commit | 93e3878c8b97ecbf28630e4bb3733a29f4cf45aa (patch) | |
tree | ef92de7c75b7899b406e99c97006a7e2b20bd86b /wqflask/maintenance/get_group_samplelists.py | |
parent | eb84f7c0e384e08b810e052fd3935f6d977b7ea2 (diff) | |
parent | 10df36b60273d81678f6630c07a2d8e5a6409282 (diff) | |
download | genenetwork2-93e3878c8b97ecbf28630e4bb3733a29f4cf45aa.tar.gz |
Conflict
Diffstat (limited to 'wqflask/maintenance/get_group_samplelists.py')
-rwxr-xr-x | wqflask/maintenance/get_group_samplelists.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py index a9059fad..2d48ce78 100755 --- a/wqflask/maintenance/get_group_samplelists.py +++ b/wqflask/maintenance/get_group_samplelists.py @@ -28,7 +28,7 @@ def get_samplelist_from_geno(genofilename): genofile = gzip.open(genofilename) else: genofile = open(genofilename) - + for line in genofile: line = line.strip() if not line: @@ -36,9 +36,9 @@ def get_samplelist_from_geno(genofilename): if line.startswith(("#", "@")): continue break - + headers = line.split() - + if headers[3] == "Mb": samplelist = headers[4:] else: @@ -47,7 +47,7 @@ def get_samplelist_from_geno(genofilename): def get_samplelist_from_plink(genofilename): genofile = open(genofilename) - + samplelist = [] for line in genofile: line = line.split(" ") |