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author | Arthur Centeno | 2021-10-25 21:04:23 +0000 |
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committer | Arthur Centeno | 2021-10-25 21:04:23 +0000 |
commit | 499a80f138030c4de1629c043c8f9401a99894ea (patch) | |
tree | 449dcae965d13f966fb6d52625fbc86661c8c6a0 /wqflask/maintenance/get_group_samplelists.py | |
parent | 6151faa9ea67af4bf4ea95fb681a9dc4319474b6 (diff) | |
parent | 700802303e5e8221a9d591ba985d6607aa61e1ce (diff) | |
download | genenetwork2-499a80f138030c4de1629c043c8f9401a99894ea.tar.gz |
Merge github.com:genenetwork/genenetwork2 into acenteno
Diffstat (limited to 'wqflask/maintenance/get_group_samplelists.py')
-rw-r--r-- | wqflask/maintenance/get_group_samplelists.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py index fb22898a..0a450d3f 100644 --- a/wqflask/maintenance/get_group_samplelists.py +++ b/wqflask/maintenance/get_group_samplelists.py @@ -1,17 +1,17 @@ -from __future__ import absolute_import, print_function, division - import os import glob import gzip from base import webqtlConfig + def get_samplelist(file_type, geno_file): if file_type == "geno": return get_samplelist_from_geno(geno_file) elif file_type == "plink": return get_samplelist_from_plink(geno_file) + def get_samplelist_from_geno(genofilename): if os.path.isfile(genofilename + '.gz'): genofilename += '.gz' @@ -35,6 +35,7 @@ def get_samplelist_from_geno(genofilename): samplelist = headers[3:] return samplelist + def get_samplelist_from_plink(genofilename): genofile = open(genofilename) |