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authorBonfaceKilz2021-04-30 12:52:55 +0300
committerBonfaceKilz2021-04-30 13:45:15 +0300
commitbd702e59d7a426fe351d34367bf824683c655696 (patch)
tree95994298c5dc29e527a0646cd99a248c7bbd8a66 /wqflask/maintenance/generate_kinship_from_bimbam.py
parentd1bc52a0d8e1219f377e804c3f27a3543d234fcb (diff)
downloadgenenetwork2-bd702e59d7a426fe351d34367bf824683c655696.tar.gz
autopep8: Fix W291, W292, W293, W391
Diffstat (limited to 'wqflask/maintenance/generate_kinship_from_bimbam.py')
-rw-r--r--wqflask/maintenance/generate_kinship_from_bimbam.py8
1 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/maintenance/generate_kinship_from_bimbam.py b/wqflask/maintenance/generate_kinship_from_bimbam.py
index bed634fa..cd39fceb 100644
--- a/wqflask/maintenance/generate_kinship_from_bimbam.py
+++ b/wqflask/maintenance/generate_kinship_from_bimbam.py
@@ -19,7 +19,7 @@ class GenerateKinshipMatrices:
self.group_name = group_name
self.geno_file = geno_file
self.pheno_file = pheno_file
-
+
def generate_kinship(self):
gemma_command = "/gnu/store/xhzgjr0jvakxv6h3blj8z496xjig69b0-profile/bin/gemma -g " + self.geno_file + \
" -p " + self.pheno_file + \
@@ -56,11 +56,11 @@ class GenerateKinshipMatrices:
print(" Column is:", convertob.latest_col_value)
print(" Row is:", convertob.latest_row_value)
break
-
-
+
+
if __name__ == "__main__":
Geno_Directory = """/export/local/home/zas1024/genotype_files/genotype/"""
Bimbam_Directory = """/export/local/home/zas1024/genotype_files/genotype/bimbam/"""
GenerateKinshipMatrices.process_all(Geno_Directory, Bimbam_Directory)
-
+
# ./gemma -g /home/zas1024/genotype_files/genotype/bimbam/BXD_geno.txt -p /home/zas1024/genotype_files/genotype/bimbam/BXD_pheno.txt -gk 1 -o BXD