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| author | BonfaceKilz | 2020-08-19 03:57:05 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2020-08-19 03:57:05 +0300 |
| commit | db41cd49b6d8ccd2c3318209118ffe098bc9293e (patch) | |
| tree | 01363468268316fe58335b958c992a9232d6b07e /wqflask/db | |
| parent | 3aaa28ea762c496eeb84e09e45194e3fd2a51673 (diff) | |
| download | genenetwork2-db41cd49b6d8ccd2c3318209118ffe098bc9293e.tar.gz | |
Remove extra whitespace(or add it) from comma separated items
See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib>
Diffstat (limited to 'wqflask/db')
| -rw-r--r-- | wqflask/db/call.py | 10 | ||||
| -rw-r--r-- | wqflask/db/webqtlDatabaseFunction.py | 8 |
2 files changed, 9 insertions, 9 deletions
diff --git a/wqflask/db/call.py b/wqflask/db/call.py index 82cfebb4..3b8f782e 100644 --- a/wqflask/db/call.py +++ b/wqflask/db/call.py @@ -26,8 +26,8 @@ GN_SERVER result when set (which should return a Tuple) else: res2 = result, if LOG_SQL: - logger.debug("Replaced SQL call",query) - logger.debug(path,res2) + logger.debug("Replaced SQL call", query) + logger.debug(path, res2) return res2 else: return fetchone(query) @@ -37,7 +37,7 @@ def fetchone(query): original fetchone, but with logging) """ - with Bench("SQL",LOG_SQL): + with Bench("SQL", LOG_SQL): def helper(query): res = g.db.execute(query) return res.fetchone() @@ -48,7 +48,7 @@ def fetchall(query): original fetchall, but with logging) """ - with Bench("SQL",LOG_SQL): + with Bench("SQL", LOG_SQL): def helper(query): res = g.db.execute(query) return res.fetchall() @@ -58,7 +58,7 @@ def gn_server(path): """Return JSON record by calling GN_SERVER """ - with Bench("GN_SERVER",LOG_SQL): + with Bench("GN_SERVER", LOG_SQL): res = urllib.request.urlopen(GN_SERVER_URL+path) rest = res.read() res2 = json.loads(rest) diff --git a/wqflask/db/webqtlDatabaseFunction.py b/wqflask/db/webqtlDatabaseFunction.py index 8a9dc79d..2805febd 100644 --- a/wqflask/db/webqtlDatabaseFunction.py +++ b/wqflask/db/webqtlDatabaseFunction.py @@ -35,13 +35,13 @@ def retrieve_species(group): """Get the species of a group (e.g. returns string "mouse" on "BXD" """ - result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group),"/cross/"+group+".json",lambda r: (r["species"],))[0] - logger.debug("retrieve_species result:",result) + result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group), "/cross/"+group+".json", lambda r: (r["species"],))[0] + logger.debug("retrieve_species result:", result) return result def retrieve_species_id(group): - result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group),"/cross/"+group+".json",lambda r: (r["species_id"],))[0] - logger.debug("retrieve_species_id result:",result) + result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group), "/cross/"+group+".json", lambda r: (r["species_id"],))[0] + logger.debug("retrieve_species_id result:", result) return result |