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authorzsloan2021-10-18 17:50:26 +0000
committerzsloan2021-10-18 17:50:26 +0000
commite36eaf0003a598bc5aa688803dd1b36c24a4c051 (patch)
treea59b7dadf02241575eb0774f97c6048e2425c053 /wqflask/db/webqtlDatabaseFunction.py
parentbd421438f1f0b4de913fa40cd49cfcda27e6b16f (diff)
parent04f3d13aceeaec2e52b94037d59f08ed6dc6a8bb (diff)
downloadgenenetwork2-e36eaf0003a598bc5aa688803dd1b36c24a4c051.tar.gz
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/remove_trait_creation_from_search
Diffstat (limited to 'wqflask/db/webqtlDatabaseFunction.py')
-rw-r--r--wqflask/db/webqtlDatabaseFunction.py17
1 files changed, 4 insertions, 13 deletions
diff --git a/wqflask/db/webqtlDatabaseFunction.py b/wqflask/db/webqtlDatabaseFunction.py
index 2805febd..9ec650a4 100644
--- a/wqflask/db/webqtlDatabaseFunction.py
+++ b/wqflask/db/webqtlDatabaseFunction.py
@@ -21,27 +21,18 @@
# This module is used by GeneNetwork project (www.genenetwork.org)
from db.call import fetch1
-from utility.tools import USE_GN_SERVER
-from utility.logger import getLogger
-logger = getLogger(__name__ )
-
-###########################################################################
-#output: cursor instance
-#function: connect to database and return cursor instance
-###########################################################################
def retrieve_species(group):
"""Get the species of a group (e.g. returns string "mouse" on "BXD"
"""
- result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group), "/cross/"+group+".json", lambda r: (r["species"],))[0]
- logger.debug("retrieve_species result:", result)
+ result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (
+ group), "/cross/" + group + ".json", lambda r: (r["species"],))[0]
return result
def retrieve_species_id(group):
-
- result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group), "/cross/"+group+".json", lambda r: (r["species_id"],))[0]
- logger.debug("retrieve_species_id result:", result)
+ result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (
+ group), "/cross/" + group + ".json", lambda r: (r["species_id"],))[0]
return result