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authorPjotr Prins2018-02-10 07:53:53 +0000
committerPjotr Prins2018-02-10 07:53:53 +0000
commit97ccc478543a7bb08fe0cf178e320dd5811d8bfa (patch)
tree65c3610e421eea8615c377d922ad63d6cd258bde /wqflask/base
parent4ae2d548127eeeaa7cec0baf1b788005b5e8e51d (diff)
downloadgenenetwork2-97ccc478543a7bb08fe0cf178e320dd5811d8bfa.tar.gz
Check for bimbam path and bail out if it is missing
Diffstat (limited to 'wqflask/base')
-rw-r--r--wqflask/base/webqtlConfig.py1
1 files changed, 1 insertions, 0 deletions
diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py
index 1ef2bc26..1e66e957 100644
--- a/wqflask/base/webqtlConfig.py
+++ b/wqflask/base/webqtlConfig.py
@@ -82,6 +82,7 @@ assert_writable_dir(GENERATED_TEXT_DIR)
# Flat file directories
GENODIR = flat_files('genotype')+'/'
assert_dir(GENODIR)
+assert_dir(GENODIR+'bimbam') # for gemma
# JSON genotypes are OBSOLETE
JSON_GENODIR = flat_files('genotype/json')+'/'