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authorZachary Sloan2013-08-14 17:25:52 -0500
committerZachary Sloan2013-08-14 17:25:52 -0500
commit26b1883a8fe4053b59833178f44e047157f2fc9c (patch)
treed2359e5952f6062d75ba1f43f1804a7b6df284c9 /wqflask/base/species.py
parenteea1c38a9851f31011787b27c14365211a06ea51 (diff)
parent6379959af53b2ec595b85ccdc099c6f14adf0381 (diff)
downloadgenenetwork2-26b1883a8fe4053b59833178f44e047157f2fc9c.tar.gz
Merge branch 'master' of https://github.com/zsloan/genenetwork
Diffstat (limited to 'wqflask/base/species.py')
-rw-r--r--wqflask/base/species.py10
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/base/species.py b/wqflask/base/species.py
index 191f4535..ebc2bfed 100644
--- a/wqflask/base/species.py
+++ b/wqflask/base/species.py
@@ -56,6 +56,7 @@ class Chromosomes(object):
                         InbredSet.Name = %s
                 Order by OrderId
                 """, self.dataset.group.name).fetchall()
+        print("group: ", self.dataset.group.name)
         print("bike:", results)
 
         for item in results:
@@ -68,9 +69,14 @@ class Chromosomes(object):
     def set_mb_graph_interval(self):
         """Empirical megabase interval"""
         
+        if self.chromosomes:
+            self.mb_graph_interval = self.get_genome_mb_length()/(len(self.chromosomes)*12)
+        else:
+            self.mb_graph_interval = 1
+            
         #if self.chromosomes:
-        assert self.chromosomes, "Have to add some code back in apparently to set it to 1"
-        self.mb_graph_interval = self.get_genome_mb_length()/(len(self.chromosomes)*12)
+        #assert self.chromosomes, "Have to add some code back in apparently to set it to 1"
+        #self.mb_graph_interval = self.get_genome_mb_length()/(len(self.chromosomes)*12)
         #else:
             #self.mb_graph_interval = 1