From 6fbbfe5e8bcc3b57c4177687bbf67bf041da3cba Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Wed, 26 Jun 2013 21:35:07 +0000
Subject: Got code that creates DataSets object running

Fixed one genofile that had extra quotation marks
in the comments that caused an error

Defaults mb_graph_interval to 1 for species without chromosome
lengths in megabases
---
 wqflask/base/species.py | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

(limited to 'wqflask/base/species.py')

diff --git a/wqflask/base/species.py b/wqflask/base/species.py
index 191f4535..ebc2bfed 100644
--- a/wqflask/base/species.py
+++ b/wqflask/base/species.py
@@ -56,6 +56,7 @@ class Chromosomes(object):
                         InbredSet.Name = %s
                 Order by OrderId
                 """, self.dataset.group.name).fetchall()
+        print("group: ", self.dataset.group.name)
         print("bike:", results)
 
         for item in results:
@@ -68,9 +69,14 @@ class Chromosomes(object):
     def set_mb_graph_interval(self):
         """Empirical megabase interval"""
         
+        if self.chromosomes:
+            self.mb_graph_interval = self.get_genome_mb_length()/(len(self.chromosomes)*12)
+        else:
+            self.mb_graph_interval = 1
+            
         #if self.chromosomes:
-        assert self.chromosomes, "Have to add some code back in apparently to set it to 1"
-        self.mb_graph_interval = self.get_genome_mb_length()/(len(self.chromosomes)*12)
+        #assert self.chromosomes, "Have to add some code back in apparently to set it to 1"
+        #self.mb_graph_interval = self.get_genome_mb_length()/(len(self.chromosomes)*12)
         #else:
             #self.mb_graph_interval = 1
 
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