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| author | Frederick Muriuki Muriithi | 2023-06-16 10:53:08 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-06-20 13:36:50 +0300 |
| commit | 883a7cba581f34eba48978746e2ff8bbb93020d8 (patch) | |
| tree | 433c1b0b6db451b841810b2fdb4f2fd07bc9377b /wqflask/base/data_set | |
| parent | 7127095f2b2c54175d1360c1ddb3e0f87b6ede98 (diff) | |
| download | genenetwork2-883a7cba581f34eba48978746e2ff8bbb93020d8.tar.gz | |
Add `create_app()` application factory
Create the application and set up configs and other things within an application factory function. Fix obvious egregious errors preventing the application from starting up correctly.
Diffstat (limited to 'wqflask/base/data_set')
| -rw-r--r-- | wqflask/base/data_set/__init__.py | 2 | ||||
| -rw-r--r-- | wqflask/base/data_set/datasetgroup.py | 3 |
2 files changed, 3 insertions, 2 deletions
diff --git a/wqflask/base/data_set/__init__.py b/wqflask/base/data_set/__init__.py index ad51e47e..c2c0aef1 100644 --- a/wqflask/base/data_set/__init__.py +++ b/wqflask/base/data_set/__init__.py @@ -115,7 +115,7 @@ def datasets(group_name, this_group=None, redis_conn=Redis()): dataset_menu.append(dict(tissue=tissue_name, datasets=[(dataset, dataset_short)])) - if get_setting_bool("USE_REDIS"): + if get_setting_bool(app, "USE_REDIS"): redis_conn.set(key, pickle.dumps(dataset_menu, pickle.HIGHEST_PROTOCOL)) redis_conn.expire(key, 60 * 5) diff --git a/wqflask/base/data_set/datasetgroup.py b/wqflask/base/data_set/datasetgroup.py index 90c59a1e..a44cf18d 100644 --- a/wqflask/base/data_set/datasetgroup.py +++ b/wqflask/base/data_set/datasetgroup.py @@ -15,6 +15,7 @@ from wqflask.database import database_connection from utility.configuration import ( locate, flat_files, + get_setting, flat_file_exists, get_setting_bool, locate_ignore_error) @@ -128,7 +129,7 @@ class DatasetGroup: return study_samples def get_genofiles(self): - jsonfile = "%s/%s.json" % (webqtlConfig.GENODIR, self.name) + jsonfile = "%s/%s.json" % (get_setting(app, "WEBQTL_GENODIR"), self.name) try: f = open(jsonfile) except: |