Add all the source codes into the github.

1 files changed, 109 insertions, 0 deletions

diff --git a/web/webqtl/dataSharing/SharingInfoUpdatePage.py b/web/webqtl/dataSharing/SharingInfoUpdatePage.py
new file mode 100755
index 00000000..a70238b9
--- /dev/null
+++ b/web/webqtl/dataSharing/SharingInfoUpdatePage.py
@@ -0,0 +1,109 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+import MySQLdb
+
+from base.templatePage import templatePage
+from base import webqtlConfig
+from dbFunction import webqtlDatabaseFunction
+import SharingBody
+import SharingInfo
+
+#########################################
+#      Sharing Info Update Page
+#########################################
+class SharingInfoUpdatePage(templatePage):
+
+		def __init__(self, fd=None):
+				templatePage.__init__(self, fd)
+				if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
+						pass
+				else:
+						heading = "Editing Info"
+						detail = ["You don't have the permission to modify this file"]
+						self.error(heading=heading,detail=detail,error="Error")
+						return
+				cursor = webqtlDatabaseFunction.getCursor()
+				if (not cursor):
+						return
+				Id=fd.formdata.getvalue('Id')
+				GN_AccesionId=fd.formdata.getvalue('GN_AccesionId')
+				GEO_Series=fd.formdata.getvalue('GEO_Series')
+				Status=fd.formdata.getvalue('Status')
+				Title=fd.formdata.getvalue('Title')
+				Organism_Id=fd.formdata.getvalue('Organism_Id')
+				Organism=fd.formdata.getvalue('Organism')
+				Experiment_Type =fd.formdata.getvalue('Experiment_Type') 
+				Summary=fd.formdata.getvalue('Summary')
+				Overall_Design=fd.formdata.getvalue('Overall_Design')
+				Contributor=fd.formdata.getvalue('Contributor')
+				Citation=fd.formdata.getvalue('Citation')
+				Submission_Date=fd.formdata.getvalue('Submission_Date')
+				Contact_Name=fd.formdata.getvalue('Contact_Name')
+				Emails=fd.formdata.getvalue('Emails')
+				Phone=fd.formdata.getvalue('Phone')
+				URL=fd.formdata.getvalue('URL')
+				Organization_Name=fd.formdata.getvalue('Organization_Name')
+				Department=fd.formdata.getvalue('Department')
+				Laboratory=fd.formdata.getvalue('Laboratory')
+				Street=fd.formdata.getvalue('Street')
+				City=fd.formdata.getvalue('City')
+				State=fd.formdata.getvalue('State')
+				ZIP=fd.formdata.getvalue('ZIP')
+				Country=fd.formdata.getvalue('Country')
+				Platforms=fd.formdata.getvalue('Platforms')
+				Samples=fd.formdata.getvalue('Samples')
+				Species=fd.formdata.getvalue('Species')
+				Tissue=fd.formdata.getvalue('Tissue')
+				Normalization=fd.formdata.getvalue('Normalization')
+				InbredSet=fd.formdata.getvalue('InbredSet')
+				InfoPageName=fd.formdata.getvalue('InfoPageName')
+				InfoPageTitle=fd.formdata.getvalue('InfoPageTitle')
+				About_Cases=fd.formdata.getvalue('About_Cases')
+				About_Tissue=fd.formdata.getvalue('About_Tissue')
+				About_Download=fd.formdata.getvalue('About_Download')
+				About_Array_Platform=fd.formdata.getvalue('About_Array_Platform')
+				About_Data_Values_Processing=fd.formdata.getvalue('About_Data_Values_Processing')
+				Data_Source_Acknowledge=fd.formdata.getvalue('Data_Source_Acknowledge')
+				AuthorizedUsers=fd.formdata.getvalue('AuthorizedUsers')
+				Progress=fd.formdata.getvalue('Progress')
+				if Id=='-1':
+						sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
+						info, filelist = sharingInfoObject.getInfo()
+						if info:
+								heading = "Editing Info"
+								detail = ["The new dataset info record is duplicate."]
+								self.error(heading=heading, detail=detail, error="Error")
+								return
+						sql = """INSERT INTO InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s"""
+						cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress]))
+						infoupdate="This record has been succesfully added."
+				else:
+						sql = """UPDATE InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s WHERE Id=%s"""
+						cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress, Id]))
+						infoupdate="This record has been succesfully updated."
+				sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
+				self.dict['body'] = sharingInfoObject.getBody(infoupdate=infoupdate)
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