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authorroot2012-05-08 18:39:56 -0500
committerroot2012-05-08 18:39:56 -0500
commitea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/webqtl/base/templatePage.py
parent056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
downloadgenenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
Add all the source codes into the github.
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#templatePage.py
+#
+#--Genenetwork generates a lot of pages; this file is the generic version of them, defining routines they all use.
+#
+#Classes:
+#templatePage
+#
+#Functions (of templatePage):
+#__init__(...) -- class constructor, allows a more specific template to be used in addition to templatePage
+#__str__(self) -- returns the object's elements as a tuple
+#__del__(self) -- closes the current connection to MySQL, if there is one
+#write -- explained below
+#writefile -- explained below
+#openMysql(self) -- opens a MySQL connection and stores the resulting cursor in the object's cursor variable
+#updMysql(self) -- same as openMysql
+#error -- explained below
+#session -- explained below
+
+
+import socket
+import time
+import shutil
+import MySQLdb
+import os
+
+from htmlgen import HTMLgen2 as HT
+
+import template
+import webqtlConfig
+import header
+import footer
+from utility import webqtlUtil
+
+
+
+class templatePage:
+
+ contents = ['title','basehref','js1','js2', 'layer', 'header', 'body', 'footer']
+
+ # you can pass in another template here if you want
+ def __init__(self, fd=None, template=template.template):
+
+ # initiate dictionary
+ self.starttime = time.time()
+ self.dict = {}
+ self.template = template
+
+ for item in self.contents:
+ self.dict[item] = ""
+
+ self.dict['basehref'] = "" #webqtlConfig.BASEHREF
+ self.cursor = None
+
+ self.cookie = [] #XZ: list to hold cookies (myCookie object) being changed
+ self.content_type = 'text/html'
+ self.content_disposition = ''
+ self.redirection = ''
+ self.debug = ''
+ self.attachment = ''
+
+ #XZ: Holding data (new data or existing data being changed) that should be saved to session. The data must be picklable!!!
+ self.session_data_changed = {}
+
+ self.userName = 'Guest'
+ self.privilege = 'guest'
+ if fd.input_session_data.has_key('user'):
+ self.userName = fd.input_session_data['user']
+ if fd.input_session_data.has_key('privilege'):
+ self.privilege = fd.input_session_data['privilege']
+
+ def __str__(self):
+
+ #XZ: default setting
+ thisUserName = self.userName
+ thisPrivilege = self.privilege
+ #XZ: user may just go through login or logoff page
+ if self.session_data_changed.has_key('user'):
+ thisUserName = self.session_data_changed['user']
+ if self.session_data_changed.has_key('privilege'):
+ thisPrivilege = self.session_data_changed['privilege']
+
+ if thisUserName == 'Guest':
+ userInfo = 'Welcome! <a href=/account.html><U>Login</U></a>'
+ else:
+ userInfo = 'Hi, %s! <a href=/webqtl/main.py?FormID=userLogoff><U>Logout</U></a>' % thisUserName
+
+ reload(header)
+ self.dict['header'] = header.header_string % userInfo
+
+ serverInfo = "It took %2.3f second(s) for %s to generate this page" % (time.time()-self.starttime, socket.getfqdn())
+ reload(footer)
+ self.dict['footer'] = footer.footer_string % serverInfo
+
+ slist = []
+ for item in self.contents:
+ slist.append(self.dict[item])
+ return self.template % tuple(slist)
+
+
+ def __del__(self):
+ if self.cursor:
+ self.cursor.close()
+
+ def write(self):
+ 'return string representation of this object'
+
+ if self.cursor:
+ self.cursor.close()
+
+ return str(self)
+
+ def writeFile(self, filename):
+ 'save string representation of this object into a file'
+ if self.cursor:
+ self.cursor.close()
+
+ try:
+ 'it could take a long time to generate the file, save to .tmp first'
+ fp = open(os.path.join(webqtlConfig.TMPDIR, filename+'.tmp'), 'wb')
+ fp.write(str(self))
+ fp.close()
+ path_tmp = os.path.join(webqtlConfig.TMPDIR, filename+'.tmp')
+ path_html = os.path.join(webqtlConfig.TMPDIR, filename)
+ shutil.move(path_tmp,path_html)
+ except:
+ pass
+
+ def openMysql(self):
+ try:
+ self.con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER, \
+ user=webqtlConfig.DB_USER,passwd=webqtlConfig.DB_PASSWD)
+ self.cursor = self.con.cursor()
+ return 1
+ except:
+ heading = "Connect MySQL Server"
+ detail = ["Can't connect to MySQL server on '"+ webqtlConfig.MYSQL_SERVER+"':100061. \
+ The server may be down at this time"]
+ self.error(heading=heading,detail=detail,error="Error 2003")
+ return 0
+
+ def updMysql(self):
+ try:
+ self.con = MySQLdb.Connect(db=webqtlConfig.DB_UPDNAME,host=webqtlConfig.MYSQL_UPDSERVER, \
+ user=webqtlConfig.DB_UPDUSER,passwd=webqtlConfig.DB_UPDPASSWD)
+ self.cursor = self.con.cursor()
+ return 1
+ except:
+ heading = "Connect MySQL Server"
+ detail = ["update: Can't connect to MySQL server on '"+ webqtlConfig.MYSQL_UPDSERVER+"':100061. \
+ The server may be down at this time "]
+ self.error(heading=heading,detail=detail,error="Error 2003")
+ return 0
+
+ def error(self,heading="",intro=[],detail=[],title="Error",error="Error"):
+ 'generating a WebQTL style error page'
+ Heading = HT.Paragraph(heading)
+ Heading.__setattr__("class","title")
+
+ Intro = HT.Blockquote()
+ if intro:
+ for item in intro:
+ Intro.append(item)
+ else:
+ Intro.append(HT.Strong('Sorry!'),' Error occurred while processing\
+ your request.', HT.P(),'The nature of the error generated is as\
+ follows:')
+
+ Detail = HT.Blockquote()
+ Detail.append(HT.Span("%s : " % error,Class="fwb cr"))
+ if detail:
+ Detail2 = HT.Blockquote()
+ for item in detail:
+ Detail2.append(item)
+ Detail.append(HT.Italic(Detail2))
+
+ #Detail.__setattr__("class","subtitle")
+ TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee',valign="top")
+ TD_LR.append(Heading,Intro,Detail)
+ self.dict['body'] = str(TD_LR)
+ self.dict['title'] = title
+
+ def session(self,mytitle="",myHeading=""):
+ 'generate a auto-refreshing temporary html file(waiting page)'
+ self.filename = webqtlUtil.generate_session()
+ self.dict['title'] = mytitle
+ self.dict['basehref'] = webqtlConfig.REFRESHSTR % (webqtlConfig.CGIDIR, self.filename) + "" #webqtlConfig.BASEHREF
+
+ TD_LR = HT.TD(align="center", valign="middle", height=200,width="100%", bgColor='#eeeeee')
+ Heading = HT.Paragraph(myHeading, Class="fwb fs16 cr")
+ # NL, 07/27/2010. variable 'PROGRESSBAR' has been moved from templatePage.py to webqtlUtil.py;
+ TD_LR.append(Heading, HT.BR(), webqtlUtil.PROGRESSBAR)
+ self.dict['body'] = TD_LR
+ self.writeFile(self.filename + '.html')
+ return self.filename
+
+