Removed everything from 'web' directory except genofiles and renamed the directory to 'genotype_files'

author: zsloan 2015-03-27 20:28:51 +0000
committer: zsloan 2015-03-27 20:28:51 +0000
commit: d0911a04958a04042da02a334ccc528dae79cc17 (patch)
tree: 3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files
parent: a840ad18e1fe3db98a359a159e9b9b72367a2839 (diff)
download: genenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz
156 files changed, 0 insertions, 5082 deletions
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0001.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0001.gif
deleted file mode 100755
index eb17de1a..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0001.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0002.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0002.gif
deleted file mode 100755
index bc3f4359..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0002.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0003.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0003.gif
deleted file mode 100755
index d3368503..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0003.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0004.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0004.gif
deleted file mode 100755
index c3eb466b..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0004.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0005.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0005.gif
deleted file mode 100755
index d005d2ff..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0005.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0006.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0006.gif
deleted file mode 100755
index 1e8fafce..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0006.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0007.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0007.gif
deleted file mode 100755
index 406e9eb3..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0007.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0008.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0008.gif
deleted file mode 100755
index 847bb7ab..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0008.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0009.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0009.gif
deleted file mode 100755
index 4af9b372..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0009.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0010.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0010.gif
deleted file mode 100755
index 2b0ee2aa..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0010.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0011.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0011.gif
deleted file mode 100755
index b537698d..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0011.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0012.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0012.gif
deleted file mode 100755
index f362d236..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0012.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0013.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0013.gif
deleted file mode 100755
index 611b1a50..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0013.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0014.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0014.gif
deleted file mode 100755
index 4a222157..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0014.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0015.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0015.gif
deleted file mode 100755
index a43a4e09..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0015.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0016.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0016.gif
deleted file mode 100755
index c7c9c4d2..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0016.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0017.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0017.gif
deleted file mode 100755
index a05bcf40..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0017.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0018.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0018.gif
deleted file mode 100755
index 014d8569..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0018.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0019.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0019.gif
deleted file mode 100755
index 782076fa..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0019.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/blank_notes.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/blank_notes.htm
deleted file mode 100755
index e833eefd..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/blank_notes.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black topmargin=0 leftmargin=0>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/endshow.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/endshow.htm
deleted file mode 100755
index a2ed520a..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/endshow.htm
+++ /dev/null
@@ -1 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-</head>
-<body bgcolor=black>
-<center>
-<p><font face=Arial color=white size=2><br>
-<b>Open the default .htm file to view this Web presentation.</b></font></p>
-</center>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/error.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/error.htm
deleted file mode 100755
index f2002169..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/error.htm
+++ /dev/null
@@ -1 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-</head>
-<body bgcolor=black>
-<center>
-<p><font face=Arial color=white size=2><br>
-<b>This presentation contains content that your browser is unable to display. This presentation was optimized for the recent version of Microsoft Internet Explorer and Netscape Navigator 4.</b></font></p>
-</center>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/filelist.xml b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/filelist.xml
deleted file mode 100755
index 4a47f1fe..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/filelist.xml
+++ /dev/null
@@ -1 +0,0 @@
-<xml xmlns:o="urn:schemas-microsoft-com:office:office">
- <o:File HRef="master03.htm"/>
- <o:File HRef="master02.htm"/>
- <o:File HRef="slide0001.htm"/>
- <o:File HRef="master03_background.png"/>
- <o:File HRef="slide0001_image001.png"/>
- <o:File HRef="slide0002.htm"/>
- <o:File HRef="slide0002_image002.png"/>
- <o:File HRef="slide0002_image003.png"/>
- <o:File HRef="slide0002_image004.png"/>
- <o:File HRef="slide0003.htm"/>
- <o:File HRef="slide0003_image005.png"/>
- <o:File HRef="slide0003_image006.png"/>
- <o:File HRef="slide0003_image008.png"/>
- <o:File HRef="slide0003_image009.png"/>
- <o:File HRef="slide0004.htm"/>
- <o:File HRef="slide0004_image010.png"/>
- <o:File HRef="slide0004_image012.png"/>
- <o:File HRef="slide0005.htm"/>
- <o:File HRef="slide0005_image013.png"/>
- <o:File HRef="slide0005_image014.png"/>
- <o:File HRef="slide0006.htm"/>
- <o:File HRef="slide0006_image015.png"/>
- <o:File HRef="slide0007.htm"/>
- <o:File HRef="slide0007_image016.png"/>
- <o:File HRef="slide0007_image017.png"/>
- <o:File HRef="slide0008.htm"/>
- <o:File HRef="slide0008_image018.png"/>
- <o:File HRef="slide0008_image019.png"/>
- <o:File HRef="slide0008_image021.png"/>
- <o:File HRef="slide0009.htm"/>
- <o:File HRef="slide0009_image022.png"/>
- <o:File HRef="slide0010.htm"/>
- <o:File HRef="slide0010_image023.png"/>
- <o:File HRef="slide0010_image024.png"/>
- <o:File HRef="slide0011.htm"/>
- <o:File HRef="slide0011_image025.png"/>
- <o:File HRef="slide0012.htm"/>
- <o:File HRef="slide0012_image026.png"/>
- <o:File HRef="slide0013.htm"/>
- <o:File HRef="slide0013_image027.png"/>
- <o:File HRef="slide0014.htm"/>
- <o:File HRef="slide0014_image029.png"/>
- <o:File HRef="slide0014_image031.png"/>
- <o:File HRef="slide0014_image033.png"/>
- <o:File HRef="slide0015.htm"/>
- <o:File HRef="slide0015_image034.png"/>
- <o:File HRef="slide0015_image035.png"/>
- <o:File HRef="slide0016.htm"/>
- <o:File HRef="slide0016_image036.png"/>
- <o:File HRef="slide0017.htm"/>
- <o:File HRef="slide0018.htm"/>
- <o:File HRef="master03_stylesheet.css"/>
- <o:File HRef="slide0019.htm"/>
- <o:File HRef="slide0020.htm"/>
- <o:File HRef="slide0021.htm"/>
- <o:File HRef="slide0022.htm"/>
- <o:File HRef="slide0023.htm"/>
- <o:File HRef="slide0024.htm"/>
- <o:File HRef="slide0025.htm"/>
- <o:File HRef="slide0026.htm"/>
- <o:File HRef="slide0027.htm"/>
- <o:File HRef="slide0028.htm"/>
- <o:File HRef="slide0029.htm"/>
- <o:File HRef="slide0030.htm"/>
- <o:File HRef="slide0031.htm"/>
- <o:File HRef="slide0032.htm"/>
- <o:File HRef="slide0033.htm"/>
- <o:File HRef="slide0034.htm"/>
- <o:File HRef="slide0035.htm"/>
- <o:File HRef="slide0036.htm"/>
- <o:MainFile HRef="::webqtl_demo2_part1.ppt.htm"/>
- <o:File HRef="error.htm"/>
- <o:File HRef="frame.htm"/>
- <o:File HRef="next_active.gif"/>
- <o:File HRef="next_disabled.gif"/>
- <o:File HRef="prev_active.gif"/>
- <o:File HRef="prev_disabled.gif"/>
- <o:File HRef="outline_collapse.gif"/>
- <o:File HRef="outline_expand.gif"/>
- <o:File HRef="notes_flag.gif"/>
- <o:File HRef="fullscr.gif"/>
- <o:File HRef="fullscrClose.gif"/>
- <o:File HRef="narration.gif"/>
- <o:File HRef="navbg.gif"/>
- <o:File HRef="outline.gif"/>
- <o:File HRef="space.gif"/>
- <o:File HRef="blank_notes.htm"/>
- <o:File HRef="endshow.htm"/>
- <o:File HRef="navigation_bar.htm"/>
- <o:File HRef="fullscreen.htm"/>
- <o:File HRef="fs_navigation_bar.htm"/>
- <o:File HRef="outline_navigation_bar.htm"/>
- <o:File HRef="outline_collapsed.htm"/>
- <o:File HRef="outline_expanded.htm"/>
- <o:File HRef="slide0001_notes_pane.htm"/>
- <o:File HRef="slide0002_notes_pane.htm"/>
- <o:File HRef="slide0003_notes_pane.htm"/>
- <o:File HRef="slide0004_notes_pane.htm"/>
- <o:File HRef="slide0005_notes_pane.htm"/>
- <o:File HRef="slide0006_notes_pane.htm"/>
- <o:File HRef="slide0007_notes_pane.htm"/>
- <o:File HRef="slide0008_notes_pane.htm"/>
- <o:File HRef="slide0009_notes_pane.htm"/>
- <o:File HRef="slide0010_notes_pane.htm"/>
- <o:File HRef="slide0011_notes_pane.htm"/>
- <o:File HRef="slide0012_notes_pane.htm"/>
- <o:File HRef="slide0013_notes_pane.htm"/>
- <o:File HRef="slide0014_notes_pane.htm"/>
- <o:File HRef="slide0015_notes_pane.htm"/>
- <o:File HRef="slide0016_notes_pane.htm"/>
- <o:File HRef="slide0018_notes_pane.htm"/>
- <o:File HRef="slide0037.htm"/>
- <o:File HRef="slide0038.htm"/>
- <o:File HRef="slide0039.htm"/>
- <o:File HRef="slide0040.htm"/>
- <o:File HRef="slide0041.htm"/>
- <o:File HRef="slide0042.htm"/>
- <o:File HRef="slide0043.htm"/>
- <o:File HRef="slide0044.htm"/>
- <o:File HRef="slide0045.htm"/>
- <o:File HRef="slide0046.htm"/>
- <o:File HRef="slide0047.htm"/>
- <o:File HRef="slide0048.htm"/>
- <o:File HRef="slide0049.htm"/>
- <o:File HRef="slide0050.htm"/>
- <o:File HRef="slide0051.htm"/>
- <o:File HRef="slide0052.htm"/>
- <o:File HRef="slide0053.htm"/>
- <o:File HRef="slide0054.htm"/>
- <o:File HRef="script.js"/>
- <o:File HRef="filelist.xml"/>
-</xml>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/frame.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/frame.htm
deleted file mode 100755
index 2981fa86..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/frame.htm
+++ /dev/null
@@ -1,43 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script><script language=JavaScript><!--
-base = parent;//-->
-</script><script language=JavaScript src=script.js></script>
-</head>
-<script> <!--
-function getSlideName() {
-	return parent.GetHrefObj( parent.g_currentSlide ).m_slideHref;
-}
-
-function getNotesName() {
-	return parent.GetHrefObj( parent.g_currentSlide ).m_notesHref;
-}
-
-function restore() {
-	self.location.reload();
-}
-
-function WriteMe() {
-	if ( true )
- 	  document.write( '<frameset cols=\"20%,*\" id=PPTHorizAdjust >' +
-	  '<frame src=\"outline_collapsed.htm\" name=PPTOtl>' );
-	  var distribution;
-	if ( parent.includeNotes ) 
-		distribution = "*,20%";
-	else 
-		distribution = "*,0";		
-	document.write('<frameset rows=\"' + distribution + '\" id=PPTVertAdjust >' +
-	'<frame src=' + getSlideName() + ' name=PPTSld>' +
-	'<frame src=' + getNotesName() + ' name=PPTNts>' );
-	document.write('</frameset>');
-	if ( true )
-	  document.write(' </frameset>' );
-}
-
-if ( parent.msie < 0 ) {
-	self.onresize = restore;
-}
-
-WriteMe();
-//-->
-</script>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/fs_navigation_bar.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/fs_navigation_bar.htm
deleted file mode 100755
index 2b5174d1..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/fs_navigation_bar.htm
+++ /dev/null
@@ -1,84 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<title>Navigation Bar</title>
-<script>
-<!--
-function restore() {
-if( navigator.platform != "MacPPC" )
-	self.location.reload();
-}
-	mainWin = parent.base;
-	dad = parent;
-function WriteBody()
-{
-   if( window.name != "PPTNav" ) return;
-	
-  document.writeln( '<table border=0 valign=top cellpadding=0 cellspacing=0 height=100% width=100%> <tr>  <td align=center valign=top> <table border=0 valign=top cellpadding=0 cellspacing=0 height=100%><tr><td align=right valign=top>' );
- if ( dad.g_hideNav != 1 ) {
-  innerText = "";
-  if ( mainWin.GetHrefObj( mainWin.g_currentSlide ).m_origVisibility == 1 && !mainWin.g_allHidden)
-    innerText = "Slide " + mainWin.GetCurrentSlideNum() + " of " + mainWin.GetNumSlides();
-  else
-    innerText = "Hidden Slide";
-  if( dad.gIsEndShow )
-  	innerText = "End of Slide Show";
-  	  
-fEnable = dad.M_HasPrevSld();
-  if( false || fEnable )
-  {
-    prevBtn = "prev_active.gif";
-    document.write( '<a onclick="if(event) event.cancelBubble=true"  href="javascript:dad.M_GoPrevSld()" >' );
-  }
-  else
-    prevBtn = "prev_disabled.gif";
-  
-  document.write( '<img src="' + prevBtn + '" border=0 alt="Previous Slide" title="Previous Slide">' );
-
-var textAlign;
- if ( false )
- 	textAlign = 'top';
- else
- 	textAlign = 'center';
- 		
-  if( false || fEnable )
-    document.write( '</a>' );
-
-  document.write( '</td><td align=center valign=' + textAlign + '> &nbsp &nbsp <font face=\"Arial\" color=#000000 size=2>' + innerText + '</font>  &nbsp &nbsp </td><td align=left valign=top>' );
-
-
-fEnable = (!dad.gIsEndShow && mainWin.EndSlideShow) || (!mainWin.EndSlideShow &&( mainWin.GetCurrentSlideNum() != mainWin.GetNumSlides() ) );
-  if(  false || fEnable )
-  {
-    nextBtn = "next_active.gif";
-    document.write( '<a onclick="if(event) event.cancelBubble=true"  href="javascript:dad.M_GoNextSld()" >' );
-  }
-  else
-    nextBtn = "next_disabled.gif";
-  document.write( '<img src="' + nextBtn + '" border=0 alt="Next Slide" title="Next Slide">' );
-
-  if( false ||  fEnable )
-    document.write( '</a>' );
-  document.write( '</td> </tr></table> </td>  <td align=right valign=top>' );
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-  <td width=100%  id="p1" ><font face=Arial size=2><b><a
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-  href="javascript:parent.base.Slide('4')" id=AREF><font face="Gill Sans">Search
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-  href="javascript:parent.base.Slide('5')" id=AREF>&quot;First page of data:&quot;</a></b></font></td>
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-  <td width=100%  id="p6" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('6')" id=AREF>&quot;Data sources:&quot;</a></b></font></td>
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-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p7" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('7')" id=AREF>&quot;Expression estimates
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-  href="javascript:parent.base.Slide('8')" id=AREF>&quot;Critiquing the App
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-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p9" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('9')" id=AREF>&quot;App expression after
-  windsorizing&quot;</a></b></font></td>
- </tr>
-</table>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p10" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('10')" id=AREF>&quot;Discovering shared
-  expression patterns&quot;</a></b></font></td>
- </tr>
-</table>
-<table  width=100%>
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-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
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-  href="javascript:parent.base.Slide('11')" id=AREF>&quot;Transcript
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-  href="javascript:parent.base.Slide('12')" id=AREF>&quot;App and Atcay
-  transcript scatterplot&quot;</a></b></font></td>
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-  <td width=100%  id="p16" ><font face=Arial size=2><b><a
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-  <td width=100%  id="p17" ><font face=Arial size=2><b><a
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-  <td width=100%  id="p18" ><font face=Arial size=2><b><a
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expand.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expand.gif
deleted file mode 100755
index c8c72b13..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expand.gif
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expanded.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expanded.htm
deleted file mode 100755
index a45e9c0c..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expanded.htm
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@@ -1,5 +0,0 @@
-<html>
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-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
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-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Robots content=NoIndex>
-<style>
-<!--a {text-decoration: none;}-->
-</style>
-</head>
-<body bgcolor=black text=white link=white vlink=white alink=white
-onload=" parent.base.highlite();" onresize="self.location.reload();">
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID1 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p1" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('1')" id=AREF>GeneNetwork and WebQTL:</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Part 1: How to study expression
-  variation and covariation (slides 2&#8211;16)</font></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Part 2. Discovering upstream modulators
-  (slides 17&#8211;30)</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID2 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
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-  href="javascript:parent.base.Slide('2')" id=AREF>Slide 2</a></b></font></td>
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- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID3 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p3" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('3')" id=AREF>Slide 3</a></b></font></td>
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- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID4 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p4" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('4')" id=AREF><font face="Gill Sans">Search
-  results</font></a></b></font></td>
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-</table>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID5 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p5" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('5')" id=AREF>&quot;First page of data:&quot;</a></b></font></td>
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- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
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- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>First page of data: The Trait Data and
-  Analysis Form</font></td>
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-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID6 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p6" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('6')" id=AREF>&quot;Data sources:&quot;</a></b></font></td>
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-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Data sources: Metadata for each
-  resource</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p7" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('7')" id=AREF>&quot;Expression estimates
-  for App on...&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Expression estimates for App on the
-  Trait Data form</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID8 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p8" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('8')" id=AREF>&quot;Critiquing the App
-  data the...&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Critiquing the App data the Trait Data</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p9" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('9')" id=AREF>&quot;App expression after
-  windsorizing&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>App expression after windsorizing</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p10" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('10')" id=AREF>&quot;Discovering shared
-  expression patterns&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Discovering shared expression patterns</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p11" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('11')" id=AREF>&quot;Transcript
-  neighborhoods&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Transcript neighborhoods</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID12 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p12" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('12')" id=AREF>&quot;App and Atcay
-  transcript scatterplot&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>App and Atcay transcript scatterplot</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID13 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p13" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('13')" id=AREF>&quot;App transcript and
-  eight of...&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>App transcript and eight of its
-  neighbors</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID14 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p14" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('14')" id=AREF>App transcript coexpression
-  neighborhood</a></b></font></td>
- </tr>
-</table>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID15 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p15" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('15')" id=AREF>&quot;Correlations of App
-  with classical...&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Correlations of App with classical
-  traits</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID16 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p16" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('16')" id=AREF>&quot;Network Graph of App
-  with...&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Network Graph of App with classical
-  traits</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID17 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p17" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('17')" id=AREF>&quot;Summary of Part 1:&quot;</a></b></font></td>
- </tr>
-</table>
-<table>
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td colspan=1><font face=Arial size=2>Summary of Part 1:</font></td>
- </tr>
-</table>
-<br>
-<table  width=100%>
- <tr>
-  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID18 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
-  <td width=100%  id="p18" ><font face=Arial size=2><b><a
-  href="javascript:parent.base.Slide('18')" id=AREF>Contact for comments and
-  improvements:</a></b></font></td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm
deleted file mode 100755
index f47a3707..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm
+++ /dev/null
@@ -1,37 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script><script language=JavaScript><!--
-
-function restore() {
-if( navigator.platform != "MacPPC" )
-	self.location.reload();
-}
-
-function writebody() {
-
-	if ( parent.g_showoutline ) {
-			document.write('<table border=0 valign=top cellspacing=0 width=\"100%\">' + 
-			'<tr valign=top><td align=left valign=top>' );
-			  document.write( '<a href=\"javascript:parent.ToggleOutline()\" ><img src=\"outline.gif\" title=\"Show/Hide Outline\" alt=\"Show/Hide Outline\" border=0></a>' );
-			  document.write( '</td>' );
-		if( parent.g_outline_href == parent.OUTLINE_EXPAND_HREF ) {
-			document.write( '<td align=right valign=top><a href=\"javascript:parent.CollapseOutline()\">' +
-			'<img src="outline_collapse.gif" title="Collapse Outline" alt="Collapse Outline" border=0>' +  
-			'</a></td>');
-		} else {
-			document.write('<td align=right valign=top><a href=\"javascript:parent.ExpandOutline()\">' +
-			'<img src="outline_expand.gif" title="Expand Outline" alt="Expand Outline" border=0>' + 
-			 '</a></td>');
-		}
-		document.write("</tr></table>");
-	}
-	else {
-			document.write( '<table border=0 valign=top cellspacing=0 width=\"100%\"><td align=\"left\"><a href=\"javascript:parent.ToggleOutline()\" ><img border=0 src=\"outline.gif\" title=\"Show/Hide Outline\" alt=\"Show/Hide Outline\"></a></td></table>' );
-	}
-}//-->
-</script>
-</head>
-<body background=navbg.gif topmargin=1 onresize="restore()" scroll="no" >
-<script language=JavaScript><!--
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-//-->
-</script>
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-</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_active.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_active.gif
deleted file mode 100755
index 004a872f..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_active.gif
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_disabled.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_disabled.gif
deleted file mode 100755
index 8a467185..00000000
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/script.js b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/script.js
deleted file mode 100755
index 7c9fb703..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/script.js
+++ /dev/null
@@ -1,1351 +0,0 @@
-var CtxAlwaysOn = false;
-function LoadSld( slideId )
-{
-	if( !g_supportsPPTHTML ) return
-	if( slideId )
-		parent.base.SldUpdated(slideId)
-	g_origSz=parseInt(SlideObj.style.fontSize)
-	g_origH=SlideObj.style.posHeight
-	g_origW=SlideObj.style.posWidth
-	g_scaleHyperlinks=(document.all.tags("AREA").length>0)
-	if ( IsWin("PPTSld") && !parent.IsFullScrMode() )
-		parent.base.highlite();	
-	if( g_scaleHyperlinks )
-		InitHLinkArray()
-	if( g_scaleInFrame||(IsWin("PPTSld") && parent.IsFullScrMode() ) )
-		document.body.scroll="no"
-	_RSW()
-	if( IsWin("PPTSld") && (parent.IsFullScrMode() || CtxAlwaysOn ) )	{
-		document.oncontextmenu=parent._CM;
-	self.focus(); 
-
-	}
-}
-function MakeSldVis( fTrans ) 
-{
-	fTrans=fTrans && g_showAnimation
-	if( fTrans )
-	{
-		if( g_bgSound ) {
-			idx=g_bgSound.indexOf(",");
-			pptSound.src=g_bgSound.substr( 0, idx );
-			pptSound.loop= -(parseInt(g_bgSound.substr(idx+1)));
-		}
-		SlideObj.filters.revealtrans.Apply()
-	}
-	SlideObj.style.visibility="visible"
-	if( fTrans )
-		SlideObj.filters.revealtrans.Play()
-}
-function MakeNotesVis() 
-{
-	if( !IsNts() ) return false 
-	SlideObj.style.display="none"
-	nObj = document.all.item("NotesObj")
-	parent.SetHasNts(0)
-	if( nObj ) { 
-		nObj.style.display=""
-		parent.SetHasNts(1)
-	}
-	return 1
-}
-function Redirect( frmId,sId )
-{
-	var str=document.location.hash,idx=str.indexOf('#')
-	if(idx>=0) str=str.substr(1);
-	if( window.name != frmId && ( sId != str) ) {
-		obj = document.all.item("Main-File")
-		window.location.href=obj.href+"#"+sId
-		return 1
-	}
-	return 0
-}
-function HideMenu() { if( frames["PPTSld"] && PPTSld.document.all.item("ctxtmenu") && PPTSld.ctxtmenu.style.display!="none" ) { PPTSld.ctxtmenu.style.display='none'; return true } return false }
-function IsWin( name ) { return window.name == name }
-function IsNts() { return IsWin("PPTNts") }
-function IsSldOrNts() { return( IsWin("PPTSld")||IsWin("PPTNts") ) }
-function SupportsPPTAnimation() { return( navigator.platform == "Win32" && navigator.appVersion.indexOf("Windows")>0 ) }
-function SupportsPPTHTML()
-{
-	var appVer=navigator.appVersion, msie=appVer.indexOf( "MSIE " ), inex = appVer.indexOf( "Internet Explorer " ), ver=0
-	if( msie >= 0 )
-		ver=parseFloat( appVer.substring( msie+5, appVer.indexOf(";",msie) ) )
-	else if( inex >= 0 )
-		ver=parseFloat( appVer.substring( inex+18, appVer.indexOf(";",inex) ) )
-	else
-		ver=parseInt(appVer)
-
-	return( ver >= 4  )
-}
-var MHTMLPrefix = CalculateMHTMLPrefix(); 
-function CalculateMHTMLPrefix()
-{
-	if ( document.location.protocol == 'mhtml:') { 
-		href=new String(document.location.href) 
-		Start=href.indexOf('!')+1 
-		End=href.lastIndexOf('/')+1 
-		if (End < Start) 
-			return href.substring(0, Start) 
-		else 
-		return href.substring(0, End) 
-	}
-	return '';
-}
-
-function LoadNavSld(slideId) {
-playList();
-parent.createCM();
-	if( !g_supportsPPTHTML ) return
-	if( IsWin("PPTSld") && slideId )
-		parent.base.SldUpdated(slideId)
-	self.focus(); 
-
-}
-var hasNarration = false;
-function _RSW()
-{
-	if( !g_supportsPPTHTML || IsNts() ||
-	  ( !g_scaleInFrame && (( window.name != "PPTSld" ) ) ) )
-		return
-
-	cltWidth=document.body.clientWidth
-	cltHeight=document.body.clientHeight
-	factor=(1.0*cltWidth)/g_origW
-	if( cltHeight < g_origH*factor )
-		factor=(1.0*cltHeight)/g_origH
-
-	newSize = g_origSz * factor
-	if( newSize < 1 ) newSize=1
-
-	s=SlideObj.style
-	s.fontSize=newSize+"px"
-	s.posWidth=g_origW*factor
-	s.posHeight=g_origH*factor
-	s.posLeft=(cltWidth-s.posWidth)/2
-	s.posTop=(cltHeight-s.posHeight)/2
-
-	if ( hasNarration ) {
-		obj = document.all.NSPlay.style;
-		mySld = document.all.SlideObj.style;
-		obj.position = 'absolute';
-		obj.posTop = mySld.posTop + mySld.posHeight - 20;
-		obj.posLeft = mySld.posLeft + mySld.posWidth - 20;
-	}
-	if( g_scaleHyperlinks )
-		ScaleHyperlinks( factor );	
-}
-function IsMac() {
-	return (window.navigator.platform.indexOf("Mac") >= 0 );
-}
-
-function HitOK( evt ) {
-	//Nav Only function
-	return (evt.which == 1 || (IsMac() && evt.which == 3) );
-}
-function _KPH(event)
-{ 
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-    		return; /* to make hyperlinks in fullscreen mode traversable */
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-	if( IsContextMenu() )
-		return parent.KPH(event);
-  	if ( parent.IsFullScrMode()  && event.which == 27 )
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-	      parent.PPTSld.DocumentOnClick();
-	    else
-	      parent.M_GoNextSld();
-      }	
-      else if ( parent.IsFullScrMode() && ((event.which == 78)  || (event.which == 110) || (event.which == 29) || (event.which == 31) || (event.which == 12)) )
-  		parent.M_GoNextSld();
-      else if ( parent.IsFullScrMode() && ( (event.which == 80)  || (event.which == 112) || (event.which == 30) || (event.which == 28) || (event.which == 11) || (event.which == 8)) )
-  		parent.M_GoPrevSld();
-
-      return;
-   }
-  	
-  if( IsNts() ) return;
-
-  if(parent.IsFullScrMode()  && event.keyCode == 27 && !parent.HideMenu() )
-    parent.base.CloseFullScreen();
-  else if( (event.keyCode == 32) || (event.keyCode == 13) )
-  {
-    if( window.name == "PPTSld" )
-      parent.PPTSld.DocumentOnClick();
-   else
-      parent.M_GoNextSld();
-  }
-  else if ( parent.IsFullScrMode() && ((event.keyCode == 78)  || (event.keyCode == 110)) )
-  	parent.M_GoNextSld();
-  else if ( parent.IsFullScrMode() && ((event.keyCode == 80)  || (event.keyCode == 112)) )
-  	parent.M_GoPrevSld();
-}
-
-function DocumentOnClick(event)
-{
-		if ( g_doAdvOnClick && !parent.IsFullScrMode() ) {
-			parent.base.TP_GoToNextSld();	
-			return;
-		}
-		
-	if ( parent.base.msie < 0 ) 
-	{
-		if( ( g_allowAdvOnClick  && parent.IsFullScrMode() ) || g_doAdvOnClick ||
-		    (event && ( (event.which == 32) || (event.which == 13) ) ) )
-			parent.M_GoNextSld();
-			return;
-	}		
-	if( IsNts() || (parent.IsFullScrMode() && parent.HideMenu() ) ) return;
-	if( ( g_allowAdvOnClick && parent.IsFullScrMode() ) || g_doAdvOnClick ||
-	    (event && ( (event.keyCode==32) || (event.keyCode == 13) ) ) )
-		parent.M_GoNextSld();
-}
-
-
-var g_supportsPPTHTML = SupportsPPTHTML(), g_scaleInFrame = true, gId="", g_bgSound="",
-    g_scaleHyperlinks = false, g_allowAdvOnClick = true, g_showInBrowser = false, g_doAdvOnClick = false;
-
- var g_showAnimation = 0;
-var g_hasTrans = false, g_autoTrans = false, g_transSecs = 0;
-var g_animManager = null;
-
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-var gCurSld = gPrevSld = 1, g_offset = 0, gNtsOpen = gHasNts = gOtlTxtExp = gNarrationPaused = false, gOtlOpen = true
-window.gPPTHTML=SupportsPPTHTML()
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-function UpdOtlPane(){ if(gOtlLoaded) PPTOtl.UpdOtl() }
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-{
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-		gHasNts=fVal
-		UpdNavPane()
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-
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-{
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-
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-function HasNextSld() { return (GetCurrentSlideNum() != GetNumSlides()) }
-function StartEndShow()
-{
-//	g_hideNav = 1;
-//	PPTNav.location.reload();
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-
-	doc=PPTSld.document
-	doc.open()
-	doc.writeln('<html><head><script > /*defer>*/ g_ctxmenu = 0; ' +
-	'if( parent.base.msie < 0 )  { document.captureEvents(Event.KEYPRESS); document.captureEvents(Event.MOUSEDOWN); document.onkeypress = _KPH; document.onmousedown = _KPH; } ' +
-	'function DocumentOnClick(event) { return _KPH(event); }  function IsContextMenu() { return (g_ctxmenu ==1); } ' +
-	'function _KPH(event)' +
-	'{  ' +
-	'if ( parent.base.msie < 0  && (parent.IsFullScrMode() ) && event ) { if ( (!parent.IsMac() && event.which == 3) || ( parent.IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 ) )  { return parent.KPH(event); } ' + 
-	' else if (event.which == 27 || event.which == 32 || event.which == 13 || parent.HitOK( event ) || (event.which == 78)  || (event.which == 110) || (event.which == 29) || (event.which == 31) || (event.which == 12) ) { if ( IsContextMenu() ) { return parent.KPH(event); }  parent.base.CloseFullScreen(); return; } ' +
-	' else if ( (event.which == 80)  || (event.which == 112) || (event.which == 30) || (event.which == 28) || (event.which == 11) || (event.which == 8) ) { parent.M_GoPrevSld(); } } ' +
-	'if( parent.HideMenu() ) return; if( (parent.IsFullScrMode() ) && event) { if ( (event.keyCode==27 || event.keyCode == 13 || event.keyCode==32 || event.type=="click" ) || (event.keyCode == 78)  || (event.keyCode == 110) ) { parent.base.CloseFullScreen(); }' +
-	' else if ( (event.keyCode == 80)  || (event.keyCode == 112) ) { parent.M_GoPrevSld(); } } } function Unload() { parent.gIsEndShow=0; } function SetupEndShow() {    if ( !parent.IsFullScrMode() ) { return; } else { parent.PPTNav.location.reload(); }  parent.gIsEndShow=1; if ( parent.g_docTable[0].type != "jpeg" ) { if ( parent.base.msie < 0 ) {parent.createCM(); } document.oncontextmenu=parent._CM; } }</script></head><body scroll=\"no\" onclick=\"DocumentOnClick(event)\" onkeypress=\"_KPH(event)\" bgcolor=\"black\" onload=\"SetupEndShow()\" onunload=\"Unload()\"><center><p><font face=Tahoma color=white size=2><br><b>' + ENDSHOW_MESG + '</b></font></p></center></body></html>')
-	doc.close()
-}
-function SetSldVisited(){ gDocTable[gCurSld-1].mVisited=true }
-function IsSldVisited(){ return gDocTable[gCurSld-1].mVisited }
-function hrefList( sldHref, visible, sldIdx )
-{
-	this.mSldHref= this.mNtsHref = sldHref
-	this.mSldIdx = sldIdx
-	this.mOrigVis= this.mVis = visible
-	this.mVisited= false
-}
-var gDocTable = new Array(
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-   new hrefList("slide0010.htm", 1, 10),
-   new hrefList("slide0011.htm", 1, 11),
-   new hrefList("slide0012.htm", 1, 12),
-   new hrefList("slide0013.htm", 1, 13),
-   new hrefList("slide0014.htm", 1, 14),
-   new hrefList("slide0015.htm", 1, 15),
-   new hrefList("slide0016.htm", 1, 16),
-   new hrefList("slide0017.htm", 1, 17),
-   new hrefList("slide0018.htm", 1, 18)
-);
-
-function ImgBtn( oId,bId,w,action )
-{
-	var t=this
-	t.Perform    = _IBP
-	t.SetActive  = _IBSetA
- t.SetInactive= _IBSetI
-	t.SetPressed = _IBSetP
-	t.SetDisabled= _IBSetD
-	t.Enabled    = _IBSetE
-	t.ChangeIcon = null
-	t.UserAction = action
-	t.ChgState   = _IBUI
-	t.mObjId   = oId
-	t.mBorderId= bId
-	t.mWidth   = w
-	t.mIsOn    = t.mCurState = 0
-}
-function _IBSetA()
-{
-	if( this.mIsOn ) {
-		obj=this.ChgState( gHiliteClr,gShadowClr,2 )
-		obj.style.posTop=0
-	}
-}
-function _IBSetI()
-{
-	if( this.mIsOn ) {
-		obj=this.ChgState( gFaceClr,gFaceClr,1 )
-		obj.style.posTop=0 
-	}
-}
-function _IBSetP()
-{
-	if( this.mIsOn ) {
-		obj=this.ChgState( gShadowClr,gHiliteClr,2 )
-		obj.style.posLeft+=1; obj.style.posTop+=1
-	}
-}
-function _IBSetD()
-{  
-	obj=this.ChgState( gFaceClr,gFaceClr,0 )
-	obj.style.posTop=0 
-}
-function _IBSetE( state )
-{
-	var t=this
-	GetObj( t.mBorderId ).style.visibility="visible"
-	if( state != t.mIsOn ) {
-		t.mIsOn=state
-		if( state )
-			t.SetInactive()
-		else
-			t.SetDisabled()
-	}
-}
-function _IBP()
-{
-	var t=this
-	if( t.mIsOn ) {
-		if( t.UserAction != null )
-			t.UserAction()
-		if( t.ChangeIcon ) {
-			obj=GetObj(t.mObjId)
-			if( t.ChangeIcon() )
-				obj.style.posLeft=obj.style.posLeft+(t.mCurState-4)*t.mWidth
-			else
-				obj.style.posLeft=obj.style.posLeft+(t.mCurState-0)*t.mWidth
-		}
-		t.SetActive()
-	}  
-}
-function _IBUI( clr1,clr2,nextState )
-{
-	var t=this
-	SetBorder( GetObj( t.mBorderId ),clr1,clr2 )
-	obj=GetObj( t.mObjId )
-	obj.style.posLeft=obj.style.posLeft+(t.mCurState-nextState)*t.mWidth-obj.style.posTop
-	t.mCurState=nextState
-	return obj
-}
-function TxtBtn( oId,oeId,action,chkState )
-{
-	var t=this
-	t.Perform    = _TBP
-	t.SetActive  = _TBSetA
-	t.SetInactive= _TBSetI
-	t.SetPressed = _TBSetP
-	t.SetDisabled= _TBSetD
-	t.SetEnabled = _TBSetE
-	t.GetState   = chkState
-	t.UserAction = action
-	t.ChgState   = _TBUI
-	t.mObjId      = oId
-	t.m_elementsId= oeId
-	t.mIsOn       = 1
-}
-function _TBSetA()
-{
-	var t=this
-	if( t.mIsOn && !t.GetState() )
-		t.ChgState( gHiliteClr,gShadowClr,0,0 )
-}
-function _TBSetI()
-{
-	var t=this
-	if( t.mIsOn && !t.GetState() )
-		t.ChgState( gFaceClr,gFaceClr,0,0 )
-}
-function _TBSetP()
-{
-	if( this.mIsOn )
-		this.ChgState( gShadowClr,gHiliteClr,1,1 )
-}
-function _TBSetD()
-{   
-	this.ChgState( gFaceClr,gFaceClr,0,0 )
-	this.mIsOn = 0
-}
-function _TBSetE()
-{
-	var t=this
-	if( !t.GetState() )
-		t.ChgState( gFaceClr,gFaceClr,0,0 )
-	else
-		t.ChgState( gShadowClr,gHiliteClr,1,1 )
-	t.mIsOn = 1
-}
-function _TBP()
-{
-	var t=this
-	if( t.mIsOn ) { 
-		if( t.UserAction != null )
-			t.UserAction()
-		if( t.GetState() )
-			t.SetPressed()
-		else
-			t.SetActive()
-	}  
-}
-function _TBUI( clr1,clr2,lOffset,tOffset )
-{
-	SetBorder( GetObj( this.mObjId ),clr1,clr2 )
-	Offset( GetObj( this.m_elementsId ),lOffset,tOffset )
-}
-function GetObj( objId ){ return document.all.item( objId ) }
-function Offset( obj, top, left ){ obj.style.top=top; obj.style.left=left }
-function SetBorder( obj, upperLeft, lowerRight )
-{
-	s=obj.style;
-	s.borderStyle      = "solid"
-	s.borderWidth      = 1 
-	s.borderLeftColor  = s.borderTopColor = upperLeft
-	s.borderBottomColor= s.borderRightColor = lowerRight
-}
-function GetBtnObj(){ return gBtnArr[window.event.srcElement.id] }
-function BtnOnOver(){ b=GetBtnObj(); if( b != null ) b.SetActive() }
-function BtnOnDown(){ b=GetBtnObj(); if( b != null ) b.SetPressed() }
-function BtnOnOut(){ b=GetBtnObj(); if( b != null ) b.SetInactive() }
-function BtnOnUp()
-{
-	b=GetBtnObj()
-	if( b != null )
-		b.Perform()
-	else
-		Upd()
-}
-function GetNtsState(){ return parent.gNtsOpen }
-function GetOtlState(){ return parent.gOtlOpen }
-function GetOtlTxtState(){ return parent.gOtlTxtExp }
-function NtsBtnSetFlag( fVal )
-{
-	s=document.all.item( this.m_flagId ).style
-	s.display="none"
-	if( fVal )
-		s.display=""
-	else
-		s.display="none"
-}
-
-var gHiliteClr="THREEDHIGHLIGHT",gShadowClr="THREEDSHADOW",gFaceClr="THREEDFACE"
-var gBtnArr = new Array()
-gBtnArr["nb_otl"] = new TxtBtn( "nb_otl","nb_otlElem",parent.ToggleOtlPane,GetOtlState )
-gBtnArr["nb_nts"] = new TxtBtn( "nb_nts","nb_ntsElem",parent.ToggleNtsPane,GetNtsState )
-gBtnArr["nb_prev"]= new ImgBtn( "nb_prev","nb_prevBorder",30,parent.GoToPrevSld )
-gBtnArr["nb_next"]= new ImgBtn( "nb_next","nb_nextBorder",30,parent.GoToNextSld )
-gBtnArr["nb_sldshw"]= new ImgBtn( "nb_sldshw","nb_sldshwBorder",18,parent.FullScreen )
-gBtnArr["nb_voice"]  = new ImgBtn( "nb_voice","nb_voiceBorder",18,parent.ToggleVNarration )
-gBtnArr["nb_otlTxt"]= new ImgBtn( "nb_otlTxt","nb_otlTxtBorder",23,parent.ToggleOtlText )
-gBtnArr["nb_nts"].m_flagId= "notes_flag"
-gBtnArr["nb_nts"].SetFlag = NtsBtnSetFlag
-gBtnArr["nb_otlTxt"].ChangeIcon= GetOtlTxtState
-var sNext="Next",sPrev="Previous",sEnd="End Show",sFont="Arial", alwaysOn = false
-function ShowMenu()
-{
-	BuildMenu();
-	var doc=PPTSld.document.body,x=PPTSld.event.clientX+doc.scrollLeft,y=PPTSld.event.clientY+doc.scrollTop
-
-	m = PPTSld.document.all.item("ctxtmenu")
-	m.style.pixelLeft=x
-	if( (x+m.scrollWidth > doc.clientWidth)&&(x-m.scrollWidth > 0) )
-		m.style.pixelLeft=x-m.scrollWidth
-
-	m.style.pixelTop=y
-	if( (y+m.scrollHeight > doc.clientHeight)&&(y-m.scrollHeight > 0) )
-		m.style.pixelTop=y-m.scrollHeight
-
-	m.style.display=""
-}
-function _CM()
-{
-	if( !parent.IsFullScrMode() && !alwaysOn) return;
-	
-	if(!PPTSld.event.ctrlKey) {
-		ShowMenu()
-		return false
-	} else
-		HideMenu()
-}
-
-function processNavKPH(event) {
-   if ( PPTSld &&  (event.keyCode != 13 || !event.srcElement.href || event.srcElement.href == "" ) )
-	return PPTSld._KPH(event);
-}
-function processNavClick() {
-	HideMenu();
-	return true;
-}
-function BuildMenu()
-{
-	if( PPTSld.document.all.item("ctxtmenu") ) return
-
-	var mObj=CreateItem( PPTSld.document.body )
-mObj.id="ctxtmenu"
-	var s=mObj.style
-	s.position="absolute"
- s.cursor="default"
-	s.width="100px"
-	SetCMBorder(mObj,"menu","black")
-
-	var iObj=CreateItem( mObj )
-	SetCMBorder( iObj, "threedhighlight","threedshadow" )
-	iObj.style.padding=2
-	if ( self.IsFullScrMode() ) {
-		CreateMenuItem( iObj,sNext,M_GoNextSld,M_True )
-		CreateMenuItem( iObj,sPrev,M_GoPrevSld,M_HasPrevSld )
-	}
-	else {
-		CreateMenuItem( iObj,sNext, base.TP_GoToNextSld, base.HasNextSld )
-		CreateMenuItem( iObj,sPrev,base.GoToPrevSld, base.HasPrevSld )
-	}
-	var sObj=CreateItem( iObj )
-	SetCMBorder(sObj,"menu","menu")
-	var s=sObj.style
-	s.borderTopColor="threedshadow"
-	s.borderBottomColor="threedhighlight"
-	s.height=1
-	s.fontSize="0px"
-	if ( self.IsFullScrMode() ) 
-		CreateMenuItem( iObj,sEnd,M_End,M_True )
-	else
-		CreateMenuItem( iObj,sEnd,M_End,M_False )
-}
-function Highlight() { ChangeClr("activecaption","threedhighlight") }
-function Deselect() { ChangeClr("threedface","menutext") }
-function Perform()
-{
-	e=PPTSld.event.srcElement
-	if( e.type=="menuitem" && e.IsActive() )
-		e.Action()
-	else
-		PPTSld.event.cancelBubble=true
-}
-function ChangeClr( bg,clr )
-{
-	e=PPTSld.event.srcElement
-	if( e.type=="menuitem" && e.IsActive() ) {
-		e.style.backgroundColor=bg
-		e.style.color=clr
-	}
-}
-
-function M_HasPrevSld() { return( base.HasPrevSld() ) }
-function M_GoNextSld() { 
-	base.SetFSMode(1);
-	if( gIsEndShow )
-		 M_End();
-	else {
-		if ( base.HasNextSld() )
-		 base.GoToNextSld();
-		else if (  base.EndSlideShow ) {
-		 StartEndShow();
-		 gIsEndShow = 1;
-		 
-		 PPTNav.location.reload();
-		}
-		else
-			base.CloseFullScreen();
-	}
-}
-function M_GoPrevSld() {
-	base.SetFSMode(1);
-	g_hideNav = 0;
-	if( gIsEndShow ) { 
-		gIsEndShow = 0;
-		if ( base.msie > 0 && IsMac() ) 
-			ChangeFrame( SLIDE_FRAME, GetHrefObj( g_currentSlide ).m_slideHref );
-		else	
-		PPTSld.history.back();
-		
-		 PPTNav.location.reload();
-		if( PPTSld.event )
-			 PPTSld.event.cancelBubble=true;
-	}
-	else
-	 	base.GoToPrevSld();
-}
-function M_True() { return true }
-function M_False() { return false }
-
-function M_End() {
-	base.CloseFullScreen();
-	/*PPTSld.event.cancelBubble=true;
-	window.close( self )*/
-}
-
-function CreateMenuItem( node,text,action,eval )
-{
-	var e=CreateItem( node )
-	e.type="menuitem"
-	e.Action=action
-	e.IsActive=eval
-	e.innerHTML=text
-
-	if( !e.IsActive() )
-		e.style.color="threedshadow"
-	e.onclick=Perform
-	e.onmouseover=Highlight
-	e.onmouseout=Deselect
-	s=e.style;
-	s.fontFamily=sFont
-	s.fontSize="8pt"
-	s.paddingLeft=2
-}
-function CreateItem( node )
-{
-	var elem=PPTSld.document.createElement("DIV")
-	node.insertBefore( elem )
-	return elem
-}
-function SetCMBorder( o,ltClr,rbClr )
-{
-	var s=o.style
-	s.backgroundColor="menu"
-	s.borderStyle="solid"
-	s.borderWidth=1
-	s.borderColor=ltClr+" "+rbClr+" "+rbClr+" "+ltClr
-}
-
-/* netscape context menu */
-g_ctxmenu = 0;
-function setRect( obj, X, Y, W, H ) {
-	obj.top = Y;
-	obj.left = X;
-	obj.clip.top = 0;
-	obj.clip.left = 0;
-	obj.clip.bottom = H;
-	obj.clip.right = W;
-}	
-
-function KPH(event) {
-	if ( ! base.IsFullScrMode() && !alwaysOn )
-		return true;
-		
-	if ( (!IsMac() &&event.which == 3) || ( IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 )   ) {
-		PPTSld.g_ctxmenu = 1;
-		PPTSld.stripUobj.visibility = "show";
-		PPTSld.stripDobj.visibility = "show";
-		PPTSld.shadeUobj.visibility = "show";
-		PPTSld.shadeDobj.visibility = "show";
-		PPTSld.panelobj.visibility = "show";
-		PPTSld.Fobj.visibility = "show";
-		PPTSld.Bobj.visibility = "show";
-		PPTSld.Eobj.visibility = "show";
-
-		setRect(PPTSld.shadeUobj, event.pageX-2, event.pageY-2, 82, 67 );		
-		setRect(PPTSld.shadeDobj, event.pageX, event.pageY, 82, 67 );		
-		setRect(PPTSld.panelobj, event.pageX, event.pageY, 80, 65 );		
-		setRect(PPTSld.Fobj, event.pageX, event.pageY, 80, 20 );
-		setRect(PPTSld.Bobj, event.pageX, event.pageY+20, 80, 20 );
-		setRect(PPTSld.stripUobj, event.pageX, event.pageY+41, 80, 1 );		
-		setRect(PPTSld.stripDobj, event.pageX, event.pageY+43, 80, 1 );		
-		setRect(PPTSld.Eobj, event.pageX, event.pageY+45, 80, 20 );
-		return false;
-	}
-	if ( HitOK( event ) ) {
-	PPTSld.g_ctxmenu = 0;
-		PPTSld.stripUobj.visibility = "hide";
-		PPTSld.stripDobj.visibility = "hide";
-		PPTSld.shadeUobj.visibility = "hide";
-		PPTSld.shadeDobj.visibility = "hide";
-		PPTSld.panelobj.visibility = "hide";
-		PPTSld.Fobj.visibility = "hide";
-		PPTSld.Bobj.visibility = "hide";
-		PPTSld.Eobj.visibility = "hide";
-	}
-	return true;
-}
-
-function overMe() {
-	this.bgColor = "blue";
-}
-
-function outMe() {
-	this.bgColor = "#AAAAAA"; 
-}
-
-function makeElement( whichEl, whichContainer ) {
-	if ( arguments.length == 1 ) {
-		whichContainer = PPTSld;
-	}
-	tmp = new Layer(100,whichContainer);
-	eval( whichEl + " = tmp" );
-	return eval(whichEl);
-}
-
-function initMe( obj, clr, text ) {
-	obj.bgColor = clr;
-//	obj.document.write("<a href='javascript:return false'>" + text + "</a>");
-	obj.document.write( "<font size=2 face=Arial " );
-	if ( !M_HasPrevSld() && (obj == PPTSld.Bobj )  ) {
-		obj.document.write( " color='#808080' " );
-	}
-	else {
-		obj.onmouseover = overMe;
-		obj.onmouseout = outMe;
-	}	
-	obj.document.write( " > &nbsp " + text +"</font> <layer top=0 left=0 width=100 height=40 ></layer>");
-	obj.document.close();
-	obj.captureEvents(Event.CLICK);
-	obj.color = "black";		
-}
-
-function createCM() {
-  if ( base.IsFullScrMode() ) {
-  	var clr = "#AAAAAA";
-	PPTSld.shadeUobj = makeElement("SHADEU");
-	PPTSld.shadeDobj = makeElement("SHADED");
-	PPTSld.panelobj = makeElement("PANEL");
-	PPTSld.stripUobj = makeElement("STRIPU");
-	PPTSld.stripDobj = makeElement("STRIPD");
-	PPTSld.shadeUobj.bgColor = "#BBBBBB";
-	PPTSld.shadeDobj.bgColor = "#888888";
-	PPTSld.stripUobj.bgColor = "#777777";
-	PPTSld.stripDobj.bgColor = "#CCCCCC";
-	PPTSld.panelobj.bgColor = clr;
-	PPTSld.Fobj = makeElement("Next");
-	PPTSld.Bobj = makeElement("Previous");
-	PPTSld.Eobj = makeElement("EndShow");
-	initMe( PPTSld.Fobj, clr, "Next" );
-	PPTSld.Fobj.onclick = M_GoNextSld;
-
-	initMe( PPTSld.Bobj, clr, "Previous" );
-	PPTSld.Bobj.onclick = M_GoPrevSld;
-
-	initMe( PPTSld.Eobj, clr, "End Show");
-	PPTSld.Eobj.onclick = base.CloseFullScreen;
-  }
-}
-
-function IsContextMenu() {
-	return (g_ctxmenu == 1)
-}
-var g_notesTable = new Array()
-var g_hiddenSlide = new Array()
-makeSlide( 0,1,1);
-makeSlide( 1,1,1);
-makeSlide( 2,1,1);
-makeSlide( 3,1,1);
-makeSlide( 4,1,1);
-makeSlide( 5,1,1);
-makeSlide( 6,1,1);
-makeSlide( 7,1,1);
-makeSlide( 8,1,1);
-makeSlide( 9,1,1);
-makeSlide( 10,1,1);
-makeSlide( 11,1,1);
-makeSlide( 12,1,1);
-makeSlide( 13,1,1);
-makeSlide( 14,1,1);
-makeSlide( 15,1,1);
-makeSlide( 16,0,1);
-makeSlide( 17,1,1);
-
-var END_SHOW_HREF         = "endshow.htm",
-    OUTLINE_EXPAND_HREF   = "outline_expanded.htm",
-    OUTLINE_COLLAPSE_HREF = "outline_collapsed.htm",
-    OUTLINE_NAVBAR_HREF  = "outline_navigation_bar.htm",
-    NAVBAR_HREF           = "navigation_bar.htm",
-    BLANK_NOTES_HREF	  = "blank_notes.htm",
-    NUM_VISIBLE_SLIDES    = 18,
-    SIMPLE_FRAMESET       = 0,
-    SLIDE_FRAME	        = "PPTSld",
-    NOTES_FRAME           = "PPTNts",
-    OUTLINE_FRAME         = "PPTOtl",
-    OUTLINE_NAVBAR_FRAME  = "PPTOtlNav",
-    NAVBAR_FRAME          = "PPTNav",
-	MAIN_FRAME			  = "MainFrame",
-	FS_NAVBAR_HREF		  = "fs_navigation_bar.htm",
-	isIEFiles 			= 2,
-	isNAVFiles 			= 8,
-	isFLATFiles 			= 16,
-	includeNotes			= 1,
-	PPTPRESENTATION     = 1;
-var  INITSLIDENUM   = 1;
-
-var EndSlideShow = 0;
-var g_outline_href = OUTLINE_COLLAPSE_HREF;	
-var g_fullscrMode = 0;	
-var FSWin = null;
-var gtmpstr = document.location.href;
-var g_baseURL = gtmpstr.substr(0, gtmpstr.lastIndexOf("/") ) + "/" + "webqtl_demo2_part1.ppt_files";
-var g_showoutline = 1;
-var g_shownotes = includeNotes;
-var g_currentSlide = INITSLIDENUM, g_prevSlide = INITSLIDENUM;
-var saveFSSlideNum = saveTPSlideNum = g_currentSlide;
-var saveFSprevSlide = saveTPprevSlide = g_prevSlide;
-var g_slideType="ie";
-var appVer = navigator.appVersion;
-var msie = appVer.indexOf( "MSIE " ) + appVer.indexOf( "Internet Explorer " );
-var isnav = ( navigator.appName.indexOf( "Netscape" ) >= 0 );
-var msieWin31 = (appVer.indexOf( "Windows 3.1" ) > 0);
-var ver = 0;
-var g_done = 0;
-var g_prevotlobjidx = 0;
-var g_ShowFSDefault = 0;
-var g_lastVisibleSld = 1;
-var g_allHidden = false;
-function IsIE() {
-	return (msie >= 0 );
-}
-
-function IsNav() {
-	return (isnav);
-}
-var msiePos = appVer.indexOf( "MSIE " );
-var inexPos = appVer.indexOf( "Internet Explorer " );
-if ( msiePos >= 0 )
-  ver = parseFloat( appVer.substring( msiePos+5, appVer.indexOf ( ";", msiePos ) ) );
-else if( inexPos >= 0 )
-  ver=parseFloat( appVer.substring( inexPos+18, appVer.indexOf(";",inexPos) ) )
-else
-  ver = parseInt( appVer );
-
-//var g_supportsPPTHTML = 0; //!msieWin31 && ( ( msie >= 0 && ver >= 3.02 ) || ( msie < 0 && ver >= 3 ) );
-
-function GetCurrentSlideNum()
-{   
-  obj = GetHrefObj( g_currentSlide );
-  if ( GetHrefObj( g_currentSlide ).m_origVisibility == 1 )
-    return obj.m_slideIdx;
-  else   
-    return g_currentSlide;
-}
-
-function GetNumSlides()
-{
-  if ( GetHrefObj( g_currentSlide ).m_origVisibility == 1 )
-    return NUM_VISIBLE_SLIDES;
-  else
-    return g_docTable.length;
-}
-
-function GetHrefObj( slideIdx )
-{ return g_docTable[slideIdx - 1];
-}
-
-function GetSlideNum( slideHref )
-{
-  for (ii=0; ii<g_docTable.length; ii++) {
-    if ( g_docTable[ii].m_slideHref == slideHref )
-      return ii+1;
-  }
-  return 1;
-}
-
-function GoToNextSld()
-{   
-  targetIdx = g_currentSlide + 1;
-  if ( GetHrefObj( targetIdx-1 ).m_origVisibility == 0 ) {
-    if ( targetIdx<=g_docTable.length ) {
-      obj = GetHrefObj( targetIdx );
-      obj.m_visibility = 1;
-      GoToSld( obj.m_slideHref );
-    }
-  }
-  else {
-    obj = GetHrefObj( targetIdx );
-    while ( obj && ( obj.m_origVisibility == 0 ) && ( targetIdx<=g_docTable.length ) )
-      obj = GetHrefObj( targetIdx++ );
-    if( obj && obj.m_origVisibility )
-      GoToSld( obj.m_slideHref );
-  }
-}
-
-function GoToPrevSld()
-{
-  targetIdx = g_currentSlide - 1;
-  if ( targetIdx > 0 ) {
-    obj = GetHrefObj( targetIdx );
-    while ( ( obj.m_visibility == 0 ) && ( targetIdx>0 ) )
-      obj = GetHrefObj( targetIdx-- );
-    GoToSld( obj.m_slideHref );
-  }
-}
-
-function GoToLast()
-{
-  targetIdx = g_docTable.length;
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-{ GoToSld( GetHrefObj(1).m_slideHref );
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-		otlobj.hidden = false;
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-		g_prevotlobjidx = index;
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-{
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-	    frames[MAIN_FRAME].frames[frame].location.href = href;
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- }
- else {
- 	if ( frame == NAVBAR_FRAME || frame == SLIDE_FRAME ) {
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- 	  if( frame == NAVBAR_FRAME ) 
-	      window.frames[frame].location.replace(href);
-	 else
-	      window.frames[frame].location.href = href;
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-		slideFrame.event.cancelBubble=true;
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-				
-function GoToSld( slideHref )
-{
-  shutEventPropagation();
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-    g_prevSlide = g_currentSlide;
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-	g_slideType = GetHrefObj( g_currentSlide ).type;
-    obj = GetHrefObj( g_currentSlide );
-    obj.m_visibility = 1;
-    ChangeFrame( SLIDE_FRAME, slideHref );
-    if( !SIMPLE_FRAMESET )
-      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
-    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
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-  }
-}
-
-function PrevSldViewed()
-{ GoToSld( GetHrefObj( g_prevSlide ).m_slideHref );
-}
-
-function NoHref() {}
-
-function ExpandOutline( )
-{ 
- g_outline_href = OUTLINE_EXPAND_HREF;
- ChangeFrame( OUTLINE_FRAME, OUTLINE_EXPAND_HREF );
- frames[OUTLINE_NAVBAR_FRAME].location.replace( OUTLINE_NAVBAR_HREF);
-}
-
-function CollapseOutline()
-{ 
- g_outline_href = OUTLINE_COLLAPSE_HREF;
- ChangeFrame( OUTLINE_FRAME, OUTLINE_COLLAPSE_HREF );
- frames[OUTLINE_NAVBAR_FRAME].location.replace( OUTLINE_NAVBAR_HREF);
- }
-
-function SlideUpdated( id )
-{
-  if ( id != GetHrefObj( g_currentSlide ).m_slideHref )  {
-    g_prevSlide = g_currentSlide;
-    g_currentSlide = GetSlideNum( id );
-    obj = GetHrefObj( g_currentSlide );
-    if( !SIMPLE_FRAMESET )
-      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
-    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
-  }
-}
-
-function hrefList( slideHref, notesHref, visible, slideIdx, type )
-{
-  this.m_slideHref  = slideHref;
-  this.m_notesHref  = notesHref;
-  this.m_navbarHref = NAVBAR_HREF;
-  this.m_origVisibility = visible;
-  this.m_visibility = visible;
-  this.m_slideIdx = slideIdx;
-  this.type = type;
-}
-
-function IsFullScrMode() {
-	return g_fullscrMode;
-}
-
-
-function IsFramesMode() {
-	return (1 - g_fullscrMode);
-}
-
-function SldUpdated( id )
-{
-  if ( ( id != GetHrefObj( g_currentSlide ).m_slideHref )  || ( g_currentSlide == g_lastVisibleSld ) ){
-    g_prevSlide = g_currentSlide;
-    g_currentSlide = GetSlideNum( id );
-    obj = GetHrefObj( g_currentSlide );
-    if( !SIMPLE_FRAMESET )
-      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
-    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
-  }
-}
-
-function ToggleOutline() {
-	g_showoutline = 1 - g_showoutline;
-	writeMyFrame();
-}
-
-function ShowHideNotes() {
-	g_shownotes = 1 - g_shownotes;
-	writeMyFrame();
-}
-
-function writeMyFrame() {
-		SetFSMode(0);
-		obj = frames[MAIN_FRAME];
-		
-		var curslide = g_baseURL + "/" +  GetHrefObj( g_currentSlide ).m_slideHref;
-		var curnotes = g_baseURL + "/" +  GetHrefObj( g_currentSlide ).m_notesHref;
-		var otlhref = g_baseURL + "/" +  g_outline_href;
-		if ( msie < 0 ) {			
-		if ( ! g_showoutline && g_shownotes ) {
-			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
-				<frameset rows=\"*,20%\" id=\"frameset2\" > \
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-				<frame src=\"' + curnotes + '\" name=PPTNts marginheight=0 marginwidth=0> \
-				</frameset> </html>' );
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-		else if( g_showoutline && g_shownotes  ){
-			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
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-				<frame src=\"' + otlhref + '\" name=PPTOtl> \
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-		}		
-		else if ( !g_shownotes && !g_showoutline ) {
-			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
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-				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
-				</frameset> </html>' );
-		}
-		else if( !g_shownotes  && g_showoutline ) {
-			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
-				<frameset cols=\"20%,*\" id=\"frameset1\"> \
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-				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
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-				obj.PPTHorizAdjust.cols = "20%,*";
-				obj.PPTOtl.location.reload();
-			}
-			else {
-				obj.PPTHorizAdjust.cols = "0,*";
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-			if ( g_shownotes ) {
-				obj.PPTVertAdjust.rows = "*,20%";
-				obj.PPTNts.location.href = curnotes;
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-			else {
-				obj.PPTVertAdjust.rows = "*,0";
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-
-function FullScreen() {
-	g_done = 0;
-
-	
-	SetFSMode(1);
-	if ( msie >= 0 )
-		FSWin = window.open( g_baseURL + "/" + "fullscreen.htm", null, "fullscreen=yes");
-	else {
-		var height = screen.availHeight;
-		if ( window.navigator.platform.indexOf( "Mac" ) >= 0 ) {
-			height -= 30;
-		}
-		FSWin = window.open( g_baseURL + "/" + "fullscreen.htm", "null", "height="+ height + ",width=" + screen.availWidth + ",screenX=0,screenY=0");
-	}
-}
-
-function SetFSMode( i ) {
-
-}
-
-function Slide( i ) {
-	SetFSMode(0);
-	GoToSld(GetHrefObj(i).m_slideHref);
-}
-
-function TP_GoToNextSld() {
-	SetFSMode(0);
-	GoToNextSld();
-}
-
-function TP_GoToPrevSld() {
-	SetFSMode(0);
-	GoToPrevSld();
-}
-
-function CloseFullScreen() {
-	g_done = 0;	
-	
-	if ( IsNav() ){
-		if ( self.opener )
-			opener.FSWin = null;
-	}
-	window.close();
-}
-
-function slidenum(i) {
-	var slidename = "slide";
-	if ( i < 10 )
-		return ( slidename + "000" + i);
-	else if ( i < 100 )
-		return ( slidename + "00" + i );
-	else if ( i < 1000 ) 
-		return (slidename + "0" + i );
-	else
-		return (slidename + i );
-}
-function UpdateLastVisibleSlide( index ) {
-	if ( g_lastVisibleSld < index ) 
-		g_lastVisibleSld = index;
-}
-
-function jpegArray( numSlides ) {
-count_hidden = 0;
-	g_docTable = new Array();
-  for( i=0; i<numSlides; i++ ) {
-    j = 2 * numSlides + i + 1;
-    var str = slidenum( j ) +".htm";
-	if( g_notesTable[i] == 1 )
-		g_docTable[i] = new hrefList( str, slidenum(i+1 ) + "_notes_pane.htm", g_hiddenSlide[i], i+1-count_hidden, "jpeg" );
-	else
-		g_docTable[i] = new hrefList( str, BLANK_NOTES_HREF, g_hiddenSlide[i], i+1-count_hidden, "jpeg" );
-    if ( !g_hiddenSlide[i] ) count_hidden++;
-    else UpdateLastVisibleSlide( i+1 );
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-
-function ieArray( numSlides ) {
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-	g_docTable = new Array();
-  for( i=0; i<numSlides; i++ ) {
-    var str = slidenum(i+1) +".htm";
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-    if ( !g_hiddenSlide[i] ) count_hidden++;
-    else UpdateLastVisibleSlide( i+1 );
-  }
-}
-
-function navArray( numSlides ) {
-count_hidden = 0;
-	g_docTable = new Array();
-  for( i=0; i<numSlides; i++ ) {
-    j = numSlides + i + 1;
-    var str = slidenum( j ) +".htm";
-	if( g_notesTable[i] == 1 )
-		g_docTable[i] = new hrefList( str, slidenum(i+1 ) + "_notes_pane.htm", g_hiddenSlide[i], i+1-count_hidden, "nav" );
-	else
-		g_docTable[i] = new hrefList( str, BLANK_NOTES_HREF, g_hiddenSlide[i], i+1-count_hidden, "nav" );
-    if ( !g_hiddenSlide[i] ) count_hidden++;
-    else UpdateLastVisibleSlide( i+1 );
-  }
-}
-
-function LoadHTMLVersion() {
-  var os = window.navigator.platform.indexOf("Mac");
-  if ( (msie || isnav ) && ( (os < 0 && ver >= 4 ) || ( os >= 0 && ver >= 5 ) || (os >=0 && msie < 0 && ver >= 4 ) )  ){
-	if ( msie >= 0 )  {
-		if ( isIEFiles > 0 )
-			ieArray( 18 );
-		else if ( isFLATFiles > 0 ){
-			/*if ( IsFramesMode() )
-				StatusPlay("This presentation is optimized for use with older versions of your browser. Since you are using a more recent version of Microsoft Internet Explorer or Netscape Navigator, consider optimizing this presentation to take advantage of your current version's advanced capabilities."); */
-			jpegArray( 18 );
-		}
-		else
-			window.location.replace(  "webqtl_demo2_part1.ppt_files/error.htm" );
-	}
-	else {
-		if ( isNAVFiles > 0 && ver < 5) 
-			navArray( 18 );
-		else if ( isFLATFiles > 0 ) {
-			/* if ( IsFramesMode() )
-				StatusPlay("This presentation is optimized for use with older versions of your browser. Since you are using a more recent version of Microsoft Internet Explorer or Netscape Navigator, consider optimizing this presentation to take advantage of your current version's advanced capabilities."); */
-			jpegArray( 18 );
-		}
-		else
-			window.location.replace(  "webqtl_demo2_part1.ppt_files/error.htm" );
-	}
-}
-else {
-	/*
-	if ( IsFramesMode() && !isWebTV() )
-		StatusPlay("This presentation contains content that your browser may not be able to show properly. This presentation was optimized for more recent versions of Microsoft Internet Explorer or Netscape Navigator.");
-	*/
-	if ( isFLATFiles <= 0 ) {
-	/*	if ( IsFramesMode() )
-			window.alert("This presentation contains content that your browser may not be able to display properly. This presentation is optimized for more recent versions of Microsoft Internet Explorer or Netscape Navigator." );
-	*/
-		window.location.replace(  "webqtl_demo2_part1.ppt_files/error.htm" );
-	}		
-	/*
-	else if ( IsFramesMode()  && !isWebTV() )
-		StatusPlay( "This presentation contains content that your browser may not be able to show properly. This presentation was optimized for more recent versions of Microsoft Internet Explorer or Netscape Navigator." ); 
-	*/	
-	jpegArray ( 18 );
-  }
-  
-}
-
-function isWebTV() {
-	if ( window.navigator.appName.indexOf( 'WebTV' ) >= 0 )
-		return true;
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-		
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-var statusText;
-var statusfirst = 0;
- function display50( text ) 
-{
-	len = text.length;
-	if ( len < 50 && count < 2) {
-		window.status = text;
-		window.setTimeout( "repeat()", 300 );
-	}	
-	else {
-		var period = 200;
-		window.status = text;
-		newtext = text.substring( 1, len );
-		if ( statusfirst ) {
-			statusfirst = 0;
-			period = 2000;
-		}	
-		window.setTimeout( "display50( newtext )", period );
-	}
-}
-function repeat(  ) {
-	count++;		
-	statusfirst = 1;
-	display50( statusText );
-}
-
-function StatusPlay( text ) {
-	count = 0;
-	statusText = text;
-	repeat( );		
- }
-function makeSlide( i, notes, visible ) {
-	g_notesTable[i] = notes;
-	g_hiddenSlide[i] = visible;
-}	
-
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001.htm
deleted file mode 100755
index d17c2490..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content="Aug-15-05: GeneNetwork and WebQTL:">
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-	height:4.5in !important;
-	font-size:76% !important;}
-->
-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0001.htm"
-if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
-	parent.base.g_done = 1;
-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return;
-if( MakeNotesVis() ) return;
-LoadSld( gId );
-playList();MakeSldVis(1);
-//-->
-</script>
-</head>
-<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
-onresize="_RSW()" onkeypress="_KPH(event)">
-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:.88%;left:3.31%;width:84.37%;height:9.89%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=T style='mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
-mso-text-indent-alt:0;position:absolute;top:0%;left:1.25%;width:97.95%;
-height:100.0%'><span style='font-size:105%'><i>GeneNetwork and WebQTL:</i></span><span
-style='font-size:68%;mso-special-format:lastCR;display:none'><i><br>
-</i></span></div>
-</div>
-<div style='position:absolute;top:24.02%;left:5.82%;width:69.0%;height:50.7%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='position:absolute;top:0%;left:2.87%;width:97.12%;
-height:71.08%'>
-<div style='mso-line-spacing:"-256 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
-56;position:absolute;top:0%;left:0%;width:92.68%;height:53.43%'><span
-style='position:absolute;top:0%;left:0%;width:100.0%'><span style='mso-special-format:
-nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:
-99%'>l</span><span style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Part
-1: How to study </span></span><span style='position:absolute;top:31.19%;
-left:8.1%;width:91.89%'><span style='font-size:106%;color:#E9EB5D;mso-color-index:
-3'>expression variation and </span></span><span style='position:absolute;
-top:61.46%;left:8.1%;width:91.89%'><span style='font-size:106%;color:#E9EB5D;
-mso-color-index:3'>covariation (slides 2&#8211;16)<br>
-</span></span></div>
-<div style='mso-line-spacing:"-256 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
-56;position:absolute;top:63.23%;left:0%;width:100.0%;height:36.76%'><span
-style='position:absolute;top:0%;left:0%;width:100.0%'><span style='mso-special-format:
-nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:
-99%'>l</span><span style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Part
-2. Discovering upstream </span></span><span style='position:absolute;
-top:45.33%;left:7.5%;width:89.32%'><span style='font-size:106%;color:#E9EB5D;
-mso-color-index:3'>modulators (slides 17&#8211;30)</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></span></div>
-</div>
-</div>
-<img border=0 src="slide0001_image001.png" style='position:absolute;top:21.9%;
-left:74.56%;width:23.57%;height:64.31%'>
-<div class=O style='position:absolute;top:79.32%;left:75.89%;width:10.46%;
-height:14.48%'>
-<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
-17;position:absolute;top:0%;left:0%;width:100.0%;height:42.68%'><span
-style='font-family:"Arial Rounded MT Bold";font-size:233%;color:#6E6E6E'>RNA</span><span
-style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
-display:none'><br>
-</span></div>
-<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
-17;position:absolute;top:46.34%;left:0%;width:82.27%;height:54.87%'><span
-style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
-mso-special-format:lastCR;display:none'><br>
-</span></div>
-</div>
-<div class=O style='position:absolute;top:66.43%;left:3.44%;width:80.66%;
-height:11.48%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'><i>PowerPoint �Normal view� has notes that may be </i></span></span><span
-style='position:absolute;top:50.76%;left:0%;width:86.53%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'><i>useful companions to these slides.</i></span><span style='font-family:
-"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:3;mso-special-format:
-lastCR;display:none'><br>
-</span></span></div>
-<div class=O style='position:absolute;top:10.95%;left:6.35%;width:55.23%;
-height:7.42%'><span style='font-family:"Gill Sans";font-size:283%;color:#E9EB5D'><i>a
-PowerPoint Presentation</i></span><span style='font-family:"Gill Sans";
-font-size:317%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
-</i></span></div>
-<div class=O style='position:absolute;top:92.4%;left:75.23%;width:26.49%;
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-07.23.2005</i></span></div>
-<div class=O style='position:absolute;top:81.97%;left:3.44%;width:77.21%;
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-<div style='position:absolute;top:0%;left:0%;width:88.16%;height:49.23%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'><i>You can also download this PowerPoint at<br>
-</i></span></div>
-<div style='position:absolute;top:50.76%;left:0%;width:100.0%;height:49.23%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'><i>ftp://atlas.utmem.edu/public/webqtl_demo2.ppt </i></span><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3;mso-special-format:lastCR;display:none'><br>
-</span></div>
-</div>
-</div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Welcome to a short
-  demonstration of the GeneNetwork and its WebQTL module. Please adjust the
-  size of the windows on your monitor so that you can see part of this page, as
-  well as GeneNetwork windows. WebQTL produces a large number of new windows,
-  so you may need to modify your browser preferences to permit pop-ups. In this
-  demonstration, we explore one important transcript expressed in the brain:
-  the amyloid beta precursor protein messenger RNA. A protein product of this
-  mRNA, the APP protein, is associated with Alzheimer�s disease.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>My thanks to Dr. Robert
-  F. Clark and Wenli Cai for testing this PowerPoint demonstration and making
-  many improvements.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>(Initial version of June
-  2003 by Rob Williams. Edits July 13, 2005 by RW and RFC. Edit July 14, 2005
-  by WC. Final edits by RF Clark, July 22, 2005.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_image001.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_image001.png
deleted file mode 100755
index a1cb20e4..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_image001.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_notes_pane.htm
deleted file mode 100755
index 7c670210..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Welcome to a short
-  demonstration of the GeneNetwork and its WebQTL module. Please adjust the
-  size of the windows on your monitor so that you can see part of this page, as
-  well as GeneNetwork windows. WebQTL produces a large number of new windows,
-  so you may need to modify your browser preferences to permit pop-ups. In this
-  demonstration, we explore one important transcript expressed in the brain:
-  the amyloid beta precursor protein messenger RNA. A protein product of this
-  mRNA, the APP protein, is associated with Alzheimer�s disease.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>My thanks to Dr. Robert
-  F. Clark and Wenli Cai for testing this PowerPoint demonstration and making
-  many improvements.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>(Initial version of June
-  2003 by Rob Williams. Edits July 13, 2005 by RW and RFC. Edit July 14, 2005
-  by WC. Final edits by RF Clark, July 22, 2005.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002.htm
deleted file mode 100755
index 8627e129..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
-<!--.sld
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-	font-size:76% !important;}
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-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
-border=0 src="slide0002_image002.png" style='position:absolute;top:8.3%;
-left:.39%;width:86.35%;height:86.21%'><img border=0 src="slide0002_image003.png"
-style='position:absolute;top:34.27%;left:59.07%;width:12.18%;height:14.48%'>
-<div style='position:absolute;top:46.64%;left:85.43%;width:16.29%;height:12.01%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=O style='position:absolute;top:2.94%;left:5.69%;width:93.49%;
-height:91.17%'>
-<div style='mso-line-spacing:"-224 0 0";position:absolute;top:0%;left:0%;
-width:91.3%;height:51.61%'><span style='font-family:"Gill Sans";font-size:217%;
-color:#E9EB5D;mso-color-index:3'>Choose<br>
-</span></div>
-<div style='mso-line-spacing:"-224 0 0";position:absolute;top:48.38%;
-left:0%;width:100.0%;height:51.61%'><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3'>database</span></div>
-</div>
-</div>
-<div style='position:absolute;top:62.19%;left:86.62%;width:21.05%;height:12.72%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=O style='position:absolute;top:6.94%;left:5.03%;width:89.93%;
-height:86.11%'>
-<div style='position:absolute;top:0%;left:0%;width:100.0%;height:51.61%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'>Enter<br>
-</span></div>
-<div style='mso-line-spacing:"-224 0 0";position:absolute;top:48.38%;
-left:0%;width:100.0%;height:51.61%'><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3'><i>APP</i></span><span
-style='font-family:"Gill Sans";font-size:250%;color:#E9EB5D;mso-color-index:
-3;mso-special-format:lastCR;display:none'><i><br>
-</i></span></div>
-</div>
-</div>
-<div style='position:absolute;top:77.73%;left:85.96%;width:12.58%;height:12.72%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=O style='position:absolute;top:6.94%;left:8.42%;width:91.57%;
-height:86.11%'>
-<div style='position:absolute;top:0%;left:0%;width:91.95%;height:51.61%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'>Select<br>
-</span></div>
-<div style='mso-line-spacing:"-224 0 0";position:absolute;top:48.38%;
-left:0%;width:100.0%;height:51.61%'><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3'>search</span></div>
-</div>
-</div>
-<div style='position:absolute;top:.88%;left:0%;width:111.92%;height:9.18%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div style='position:absolute;top:0%;left:.94%;width:99.05%;height:80.76%'>
-<div class=B1 style='mso-margin-left-alt:644;mso-text-indent-alt:420'></div>
-<div class=B2 style='mso-margin-left-alt:937;mso-text-indent-alt:716'></div>
-<div class=B3 style='mso-margin-left-alt:1232;mso-text-indent-alt:1009'></div>
-<div class=B4 style='mso-margin-left-alt:1544;mso-text-indent-alt:1304'></div>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:0;position:absolute;top:0%;left:0%;width:100.0%;height:
-100.0%'><span style='mso-special-format:nobullet;display:none;color:#FBFDB8;
-font-family:"Monotype Sorts";font-size:99%'>l</span><span style='font-size:
-106%;color:#E9EB5D;mso-color-index:3'>PART 1: How to study variation and
-covariation</span></div>
-</div>
-</div>
-<div style='position:absolute;top:15.54%;left:85.82%;width:16.15%;height:22.43%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=O style='mso-line-spacing:"-224 0 0";position:absolute;top:1.57%;
-left:6.55%;width:94.26%;height:94.48%'><span style='position:absolute;
-top:0%;left:0%;width:91.3%'><span style='font-family:"Gill Sans";font-size:
-217%;color:#E9EB5D;mso-color-index:3'>Choose<span style="mso-spacerun:
-yes">&nbsp; </span></span></span><span style='position:absolute;top:25.0%;
-left:0%;width:91.3%'><span style='font-family:"Gill Sans";font-size:217%;
-color:#E9EB5D;mso-color-index:3'>species, </span></span><span style='position:
-absolute;top:49.16%;left:0%;width:91.3%'><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3'>group, </span></span><span
-style='position:absolute;top:73.33%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'>and type</span></span></div>
-</div>
-<img border=0 src="slide0002_image004.png" style='position:absolute;top:71.37%;
-left:48.87%;width:12.58%;height:13.78%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Please link to the web
-  site:<span style="mso-spacerun: yes">&nbsp; </span>http://www.genenetwork.org</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>To begin a search you
-  make choices about what species, group, and database to explore.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>For this demonstration
-  enter APP as above and click on the SEARCH button. Make sure that the DEFAULT
-  SETTINGS are species = Mouse, Group = BXD, Type = Whole Brain, and Database =
-  INIA BRAIN mRNA M430 (Apr05) PDNN.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>1. The GeneNetwork and
-  WebQTL are often used to work with public data sets. However, it is possible
-  to enter and analyze your own data for specific genetic reference populations
-  such as the BXD genetic reference population of mice or the HXB strains of rat.
-  Entering your own data is a more advanced topic, but if you click on the HOME
-  pop-down menu (upper left), you will see �Enter Trait Data� that will explain
-  the process.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>2.</font><font
-  face=Helvetica size=3> For help on advanced searching methods read the left
-  side of the page (INTRODUCTION).<span style="mso-spacerun: yes">&nbsp;
-  </span>If you make a search term too complex, you may get no hits (try
-  entering �amyloid beta� for example). If you make it too simple, you may also
-  get too many.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>3.</font><font
-  face=Helvetica size=3> Use the asterisk * as a wildcard. For example, to find
-  all <i>Hoxb</i> transcripts, search for Hoxb*.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>4.</font><font
-  face=Helvetica size=3> In some cases you can also research for transcripts
-  and genes using special search strings such as �</font><font face=Geneva
-  size=3>Mb = (Chr1, 100 102)� to find all genes on Chromosome 1 between 98 and
-  104 megabases (don�t actually use the quotes). Details are described at </font><font
-  face=Verdana size=3>http://www.genenetwork.org/searchHelp.html</font><font
-  face=Geneva size=3>.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>5.<span
-  style="mso-spacerun: yes">&nbsp;&nbsp; </span>These INFO buttons provide
-  links to data about the different data types. Try them.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>6.<span
-  style="mso-spacerun: yes">&nbsp; </span>The SET TO DEFAULT button is used to
-  change the database default setting to match your typical search categories.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image002.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image002.png
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image002.png
+++ /dev/null
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deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image003.png
+++ /dev/null
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+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_notes_pane.htm
deleted file mode 100755
index 5f7740c5..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Please link to the web
-  site:<span style="mso-spacerun: yes">&nbsp; </span>http://www.genenetwork.org</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>To begin a search you
-  make choices about what species, group, and database to explore.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>For this demonstration
-  enter APP as above and click on the SEARCH button. Make sure that the DEFAULT
-  SETTINGS are species = Mouse, Group = BXD, Type = Whole Brain, and Database =
-  INIA BRAIN mRNA M430 (Apr05) PDNN.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>1. The GeneNetwork and
-  WebQTL are often used to work with public data sets. However, it is possible
-  to enter and analyze your own data for specific genetic reference populations
-  such as the BXD genetic reference population of mice or the HXB strains of rat.
-  Entering your own data is a more advanced topic, but if you click on the HOME
-  pop-down menu (upper left), you will see �Enter Trait Data� that will explain
-  the process.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>2.</font><font
-  face=Helvetica size=2> For help on advanced searching methods read the left
-  side of the page (INTRODUCTION).<span style="mso-spacerun: yes">&nbsp;
-  </span>If you make a search term too complex, you may get no hits (try
-  entering �amyloid beta� for example). If you make it too simple, you may also
-  get too many.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>3.</font><font
-  face=Helvetica size=2> Use the asterisk * as a wildcard. For example, to find
-  all <i>Hoxb</i> transcripts, search for Hoxb*.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>4.</font><font
-  face=Helvetica size=2> In some cases you can also research for transcripts
-  and genes using special search strings such as �</font><font face=Geneva
-  color="#222222" size=2>Mb = (Chr1, 100 102)� to find all genes on Chromosome
-  1 between 98 and 104 megabases (don�t actually use the quotes). Details are
-  described at </font><font face=Verdana color=black size=2>http://www.genenetwork.org/searchHelp.html</font><font
-  face=Geneva color="#222222" size=2>.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>5.<span
-  style="mso-spacerun: yes">&nbsp;&nbsp; </span>These INFO buttons provide
-  links to data about the different data types. Try them.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>6.<span
-  style="mso-spacerun: yes">&nbsp; </span>The SET TO DEFAULT button is used to
-  change the database default setting to match your typical search categories.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
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-	height:4.5in !important;
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-<div style='position:absolute;top:.88%;left:.79%;width:105.69%;height:9.18%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div style='position:absolute;top:0%;left:1.0%;width:98.99%;height:80.76%'>
-<div class=B1 style='mso-margin-left-alt:644;mso-text-indent-alt:420'></div>
-<div class=B2 style='mso-margin-left-alt:937;mso-text-indent-alt:716'></div>
-<div class=B3 style='mso-margin-left-alt:1232;mso-text-indent-alt:1009'></div>
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-font-family:"Monotype Sorts";font-size:99%'>l</span><span style='font-size:
-106%;color:#E9EB5D;mso-color-index:3'>Please also use the Glossary, FAQ, and
-News</span></div>
-</div>
-</div>
-<img border=0 src="slide0003_image006.png" style='position:absolute;top:10.07%;
-left:1.72%;width:69.66%;height:60.95%'><img border=0
-src="slide0003_image008.png" style='position:absolute;top:9.18%;left:18.8%;
-width:12.58%;height:13.78%'><img border=0 src="slide0003_image009.png"
-style='position:absolute;top:49.11%;left:38.27%;width:60.0%;height:48.58%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>SHORT DETOUR to the HELP
-  menu. If you are new to the GeneNetwork, you may find it helpful to review
-  the The Glossary and FAQ pages shown above. We are in the process of making
-  �live� demos for some of the key modules in the GeneNetwork. Check the NEWS
-  every month or two to find out about new features.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image005.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image005.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>SHORT DETOUR to the HELP
-  menu. If you are new to the GeneNetwork, you may find it helpful to review
-  the The Glossary and FAQ pages shown above. We are in the process of making
-  �live� demos for some of the key modules in the GeneNetwork. Check the NEWS
-  every month or two to find out about new features.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004.htm
+++ /dev/null
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-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content="Aug-15-05: Search results">
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
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-	height:4.5in !important;
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-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
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-</head>
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-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
-border=0 src="slide0004_image010.png" style='position:absolute;top:9.18%;
-left:3.31%;width:68.74%;height:90.81%'><img border=0
-src="slide0004_image012.png" style='position:absolute;top:63.78%;left:63.57%;
-width:14.7%;height:6.53%'>
-<div class=O style='position:absolute;top:45.93%;left:80.13%;width:18.94%;
-height:47.17%'>
-<div style='mso-line-spacing:"-224 0 0";position:absolute;top:0%;left:0%;
-width:100.0%;height:44.94%'><span style='position:absolute;top:0%;left:0%;
-width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
-mso-color-index:3'>Highlight </span></span><span style='position:absolute;
-top:24.16%;left:0%;width:100.0%'><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3'>this probe </span></span><span
-style='position:absolute;top:49.16%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'>set in red </span></span><span style='position:absolute;top:73.33%;
-left:0%;width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;
-color:#E9EB5D;mso-color-index:3'>and</span><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3;display:none'><i><br>
-</i></span></span></div>
-<div style='mso-line-spacing:"-224 0 0";position:absolute;top:43.82%;
-left:0%;width:100.0%;height:56.17%'><span style='position:absolute;top:0%;
-left:0%;width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;
-color:#E9EB5D;mso-color-index:3'>click. You </span></span><span
-style='position:absolute;top:20.0%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'>do NOT </span></span><span style='position:absolute;top:39.33%;left:0%;
-width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
-mso-color-index:3'>have to </span></span><span style='position:absolute;
-top:59.33%;left:0%;width:100.0%'><span style='font-family:"Gill Sans";
-font-size:217%;color:#E9EB5D;mso-color-index:3'>select the </span></span><span
-style='position:absolute;top:78.66%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3'>checkbox</span><span style='font-family:"Gill Sans";font-size:250%;
-color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;display:none'><br>
-</span></span></div>
-</div>
-<div style='position:absolute;top:-4.41%;left:1.72%;width:84.63%;height:18.19%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=T style='position:absolute;top:29.12%;left:1.4%;width:97.18%;
-height:42.71%'><span style='font-size:82%'>Search results</span><span
-style='mso-special-format:lastCR;display:none'><br>
-</span></div>
-</div>
-</div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>RESULTS OF THE APP
-  SEARCH.<span style="mso-spacerun: yes">&nbsp; </span>A search of the INIA
-  Brain database generates 18 matches, 10 of which are shown above. The
-  GeneNetwork will display several hundred matches in pages of 40 each. If a
-  search generates a larger numbers of hits, then you will need to refine
-  search terms.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>1. APP is a great
-  transcript to introduce you to the complexity and power of new array
-  platforms that often provide �alternative� expression estimates for single
-  genes. There are seven probe sets that target different parts of the APP
-  transcript. Which of the alternative measurements is most appropriate and
-  informative? Have a look at the FAQ page for more on this topic, but general
-  advice: 1. be skeptical and try to validate that the correct transcript and
-  gene is being measured; 2. check what part of the transcript is complementary
-  to the probes; 3. evaluate the performance of individual probes based on
-  expression level, signal-to-noise and other error terms such as the standard
-  deviation and error.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. In this particular
-  case we have highlighted and selected # 5 on this SEARCH RESULTS page. The
-  annotation for this probe set mentions that it targets the last three exons
-  and the 3� untranslated region (UTR) of the amyloid precursor protein (APP).<span
-  style="mso-spacerun: yes">&nbsp; </span>That is just what we want.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>3. Most probe sets have
-  not been annotated in as much detail as App. Refer tot the FAQ to learn how
-  to annotate probe sets yourself.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image010.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image010.png
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image010.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image012.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image012.png
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deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>RESULTS OF THE APP
-  SEARCH.<span style="mso-spacerun: yes">&nbsp; </span>A search of the INIA
-  Brain database generates 18 matches, 10 of which are shown above. The
-  GeneNetwork will display several hundred matches in pages of 40 each. If a
-  search generates a larger numbers of hits, then you will need to refine
-  search terms.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>1. APP is a great
-  transcript to introduce you to the complexity and power of new array
-  platforms that often provide �alternative� expression estimates for single
-  genes. There are seven probe sets that target different parts of the APP
-  transcript. Which of the alternative measurements is most appropriate and
-  informative? Have a look at the FAQ page for more on this topic, but general
-  advice: 1. be skeptical and try to validate that the correct transcript and
-  gene is being measured; 2. check what part of the transcript is complementary
-  to the probes; 3. evaluate the performance of individual probes based on
-  expression level, signal-to-noise and other error terms such as the standard
-  deviation and error.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. In this particular
-  case we have highlighted and selected # 5 on this SEARCH RESULTS page. The
-  annotation for this probe set mentions that it targets the last three exons
-  and the 3� untranslated region (UTR) of the amyloid precursor protein (APP).<span
-  style="mso-spacerun: yes">&nbsp; </span>That is just what we want.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>3. Most probe sets have
-  not been annotated in as much detail as App. Refer tot the FAQ to learn how
-  to annotate probe sets yourself.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
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-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
-border=0 src="slide0005_image013.png" style='position:absolute;top:8.83%;
-left:2.51%;width:77.48%;height:80.56%'>
-<div style='position:absolute;top:1.06%;left:0%;width:108.21%;height:8.3%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:1.83%;width:98.16%;
-height:78.72%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3'>First page of data: The
-Trait Data and Analysis Form</span><span style='font-size:106%;color:#E9EB5D;
-mso-color-index:3;mso-special-format:lastCR;display:none'><br>
-</span></div>
-</div>
-<img border=0 src="slide0005_image014.png" style='position:absolute;top:34.98%;
-left:68.74%;width:16.42%;height:9.71%'>
-<div style='position:absolute;top:23.32%;left:84.76%;width:16.68%;height:34.09%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=O style='position:absolute;top:2.07%;left:6.34%;width:93.65%;
-height:95.33%'><span style='position:absolute;top:0%;left:0%;width:90.67%'><span
-style='font-size:200%;color:#E9EB5D'><i>Click </i></span></span><span
-style='position:absolute;top:16.3%;left:0%;width:90.67%'><span
-style='font-size:200%;color:#E9EB5D'><i>here<br>
-</i></span></span>
-<div style='position:absolute;top:33.15%;left:0%;width:100.0%;height:16.84%'><span
-style='font-size:200%;color:#E9EB5D'><i>to learn<br>
-</i></span></div>
-<div style='position:absolute;top:49.45%;left:0%;width:90.67%;height:16.84%'><span
-style='font-size:200%;color:#E9EB5D'><i>about<br>
-</i></span></div>
-<div style='position:absolute;top:66.3%;left:0%;width:90.67%;height:16.84%'><span
-style='font-size:200%;color:#E9EB5D'><i>data<br>
-</i></span></div>
-<div style='position:absolute;top:83.15%;left:0%;width:90.67%;height:16.84%'><span
-style='font-size:200%;color:#E9EB5D'><i>source</i></span></div>
-</div>
-</div>
-</div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>The Trait Data and
-  Analysis Form is the single most important page from the point of view of
-  working with GeneNetwork data. Please read the text carefully. Explore the
-  links, but do not close this page. We will need it many more times in this
-  demonstration.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>1. What is this
-  database? It is called INIA Brain mRNA M430 (Apr05) PDNN, but what does that
-  actually mean. How much of the brain was used? How were the animals
-  processed? Most of these types of questions can be answered by clicking on
-  the DATABASE link.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. Transcript/gene
-  LOCATION data is usually from the most recent assembly. You can VERIFY the
-  location of the probes and probe set using the two VERIFY buttons. VERIFY
-  UCSC performs a sequence alignment (BLAT analysis) of the probes to the most
-  recent assembly.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>3. The PROBE TOOL button
-  provides you with highly detailed information on the probe sequences used to
-  assemble the probe set. For example, in this case you can find out which
-  probes correspond to which of the three exons. You can also review the
-  performance of the individual probes. Please check the GLOSSARY for
-  additional details on probes.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>4. The identifiers (IDs)
-  provide links to other key resources.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image013.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image013.png
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image013.png
+++ /dev/null
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+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_notes_pane.htm
deleted file mode 100755
index fbe8c631..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>The Trait Data and
-  Analysis Form is the single most important page from the point of view of
-  working with GeneNetwork data. Please read the text carefully. Explore the
-  links, but do not close this page. We will need it many more times in this
-  demonstration.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>1. What is this
-  database? It is called INIA Brain mRNA M430 (Apr05) PDNN, but what does that
-  actually mean. How much of the brain was used? How were the animals
-  processed? Most of these types of questions can be answered by clicking on
-  the DATABASE link.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. Transcript/gene
-  LOCATION data is usually from the most recent assembly. You can VERIFY the
-  location of the probes and probe set using the two VERIFY buttons. VERIFY
-  UCSC performs a sequence alignment (BLAT analysis) of the probes to the most
-  recent assembly.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>3. The PROBE TOOL button
-  provides you with highly detailed information on the probe sequences used to
-  assemble the probe set. For example, in this case you can find out which
-  probes correspond to which of the three exons. You can also review the
-  performance of the individual probes. Please check the GLOSSARY for
-  additional details on probes.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>4. The identifiers (IDs)
-  provide links to other key resources.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006.htm
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-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
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-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:-1.06%;left:0%;width:100.26%;height:10.07%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:1.98%;width:96.82%;
-height:73.68%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Data sources: Metadata
-for each resource</span></div>
-</div>
-<img border=0 src="slide0006_image015.png" style='position:absolute;top:6.71%;
-left:3.31%;width:60.39%;height:92.22%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Most of the database
-  components and resources in The GeneNetwork are linked to metadata pages that
-  provide a human-readable summary of how, why, where, when, and with whom the
-  data were generated. Before you get too involved with a data set, it is
-  naturally important to read this information. While the data in The
-  GeneNetwork may be accessible and useful, that does not always mean that the
-  data is public domain and available for you to use in publication or for
-  profit purposes. If you want to know more about the data ownership and usage,
-  please read through the POLICIES pop-down menu items.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_image015.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_image015.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
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-<body bgcolor=black text=white>
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- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Most of the database
-  components and resources in The GeneNetwork are linked to metadata pages that
-  provide a human-readable summary of how, why, where, when, and with whom the
-  data were generated. Before you get too involved with a data set, it is
-  naturally important to read this information. While the data in The
-  GeneNetwork may be accessible and useful, that does not always mean that the
-  data is public domain and available for you to use in publication or for
-  profit purposes. If you want to know more about the data ownership and usage,
-  please read through the POLICIES pop-down menu items.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007.htm
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-<link title="Presentation File" type="application/powerpoint" rel=alternate
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-<script>
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-height:88.09%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Expression estimates for </span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3'> on the Trait Data form</span><span
-style='font-size:81%;color:#E9EB5D;mso-color-index:3'> </span></div>
-</div>
-<div style='position:absolute;top:81.09%;left:2.51%;width:110.46%;height:11.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=O style='position:absolute;top:7.69%;left:.83%;width:99.16%;
-height:84.61%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:183%;color:#E9EB5D;mso-color-index:
-3'>Trait data for each strain with SE when known. For array data the scale is </span></span><span
-style='position:absolute;top:49.09%;left:0%;width:84.28%'><span
-style='font-family:"Gill Sans";font-size:183%;color:#E9EB5D;mso-color-index:
-3'>~ log base 2.<span style="mso-spacerun: yes">&nbsp;&nbsp; </span></span><span
-style='font-size:167%;color:#E9EB5D;mso-color-index:3'>F1 data = 16.723 =
-2^16.723 = 108,174</span></span></div>
-</div>
-<img border=0 src="slide0007_image016.png" style='position:absolute;top:7.77%;
-left:2.51%;width:51.65%;height:72.26%'><img border=0
-src="slide0007_image017.png" style='position:absolute;top:33.92%;left:57.88%;
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-<div style='position:absolute;top:47.7%;left:57.48%;width:36.29%;height:18.9%;
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-<div class=O style='position:absolute;top:3.73%;left:2.91%;width:97.08%;
-height:96.26%'><span style='position:absolute;top:0%;left:0%;width:96.24%'><span
-style='font-size:167%;color:#E9EB5D;mso-color-index:3'>These values can all </span></span><span
-style='position:absolute;top:25.24%;left:0%;width:93.98%'><span
-style='font-size:167%;color:#E9EB5D;mso-color-index:3'>be changed by the </span></span><span
-style='position:absolute;top:49.51%;left:0%;width:100.0%'><span
-style='font-size:167%;color:#E9EB5D;mso-color-index:3'>user. (Yes, there is a </span></span><span
-style='position:absolute;top:74.75%;left:0%;width:93.98%'><span
-style='font-size:167%;color:#E9EB5D;mso-color-index:3'>RESET)</span></span></div>
-</div>
-</div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>This slide shows you the
-  lower parts of the Trait Data and Analysis Form with the data for the first
-  set of BXD strains</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image016.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image016.png
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@@ -1,5 +0,0 @@
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- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>This slide shows you the
-  lower parts of the Trait Data and Analysis Form with the data for the first
-  set of BXD strains</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008.htm
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008.htm
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@@ -1,25 +0,0 @@
-<html>
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-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
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-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:.53%;left:.79%;width:98.54%;height:8.12%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:2.01%;width:96.9%;
-height:91.3%'><span style='mso-special-format:nobullet;display:none;color:#FBFDB8;
-font-family:"Monotype Sorts";font-size:99%'>l</span><span style='font-size:
-106%;color:#E9EB5D;mso-color-index:3'>Critiquing the </span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> data the Trait Data</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></div>
-</div>
-<div style='position:absolute;top:74.38%;left:2.51%;width:110.86%;height:13.78%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=O style='position:absolute;top:6.41%;left:.83%;width:99.16%;
-height:88.46%'><span style='position:absolute;top:0%;left:0%;width:98.55%'><span
-style='font-family:"Gill Sans";font-size:150%;color:#E9EB5D;mso-color-index:
-3'>Use the BASIC STATISTICS button to evaluate the App data. You will find that
-App data </span></span><span style='position:absolute;top:31.88%;left:0%;
-width:100.0%'><span style='font-family:"Gill Sans";font-size:150%;color:#E9EB5D;
-mso-color-index:3'>from the different strains are not equally trustworthy. BXD8
-is an obvious outlier without </span></span><span style='position:absolute;
-top:63.76%;left:0%;width:93.85%'><span style='font-family:"Gill Sans";
-font-size:150%;color:#E9EB5D;mso-color-index:3'>replication (no error bar)</span><span
-style='font-size:150%;color:#E9EB5D;mso-color-index:3'>. BXD33 is also
-suspiciously low. BXD5 is noisy. </span><span style='font-family:"Gill Sans";
-font-size:150%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></span></div>
-</div>
-<img border=0 src="slide0008_image018.png" style='position:absolute;top:7.77%;
-left:2.11%;width:16.02%;height:18.72%'><img border=0
-src="slide0008_image019.png" style='position:absolute;top:8.3%;left:18.27%;
-width:73.37%;height:66.07%'><img border=0 src="slide0008_image021.png"
-style='position:absolute;top:87.27%;left:59.6%;width:30.72%;height:13.42%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>The Basic Statistics
-  page allows you to evaluate some aspects of the data quality. In this case,
-  BXD8 is a potential problem. An outlier of this type may be generated by a
-  technical artifact (bad sample?). However, it is also possible that BXD8 just
-  has genuine low endogenous expression of App and may therefore be a
-  particularly valuable model for research. There are different ways to treat
-  problematic data of these types. One way is simply to discard this datum. The
-  other way is to prevent outliers from have too much influence quantitatively,
-  while leaving them in their low (or high positions). This is called
-  windsorizing the data (after King Henry the VIII who had a habit of chopping
-  heads). In this case, we have windsorized the BXD8 to a value of 16.0 and the
-  BXD33 to a value of 16.02. Rank is retained. We are making a bet that the two
-  lowest strains are really low, but we are hedging our bet and just making
-  them a little lower than BXD90. This removes their �undue� influence.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>1. It turns out that
-  BXD8 is a strain with many odd phenotypes. The whole strain is essentially an
-  outlier for many traits. Therefore, the low App expression data may be quite
-  accurate. Still, it would be comforting to have at least two more replicates.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image018.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image018.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_notes_pane.htm
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-  <td align=left colspan=1><font face=Helvetica size=2>The Basic Statistics
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-  other way is to prevent outliers from have too much influence quantitatively,
-  while leaving them in their low (or high positions). This is called
-  windsorizing the data (after King Henry the VIII who had a habit of chopping
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- </tr>
-</table>
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-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009.htm
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@@ -1,25 +0,0 @@
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-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
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-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> expression after
-windsorizing</span></div>
-</div>
-<img border=0 src="slide0009_image022.png" style='position:absolute;top:8.83%;
-left:2.51%;width:94.17%;height:83.74%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Now we get a much better
-  feel for the variation in the error among the cases. Those without error bars
-  are of course the �noisiest� of all. This data set is not complete yet (the
-  aim is to acquire at least one male-female sample for each BXD strain).</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_image022.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_image022.png
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_image022.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_notes_pane.htm
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010.htm
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-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return;
-if( MakeNotesVis() ) return;
-LoadSld( gId );
-playList();MakeSldVis(1);
-//-->
-</script>
-</head>
-<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
-onresize="_RSW()" onkeypress="_KPH(event)">
-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:0%;left:.79%;width:93.64%;height:14.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:97.45%;
-height:51.21%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Discovering shared
-expression patterns</span></div>
-</div>
-<img border=0 src="slide0010_image023.png" style='position:absolute;top:10.07%;
-left:3.31%;width:94.17%;height:37.27%'><img border=0
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-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Finally, we can now
-  start an analysis.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>We ask a simple
-  question:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Do differences in this
-  particular App transcript steady-state abundance level correlate with those
-  of any other transcripts in the same INIA Brain mRNA M430 data set?</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>1.</font><font
-  face=Helvetica size=3>You can CHOOSE many other DATABASES at this point if
-  you want, but for now let�s stick with the default.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. There are different
-  ways to sort the correlations. The most obvious is by p-value (most
-  significant values at the top of the list), but it is also interesting to
-  sort the top 100 or top 500 by their gene symbol (gene ID) or by their
-  chromosomal location (position).</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>3. If you don�t want
-  your analysis to be sensitive to outliers, then you may want to choose to use
-  the Spearman Rank Order method of calculating correlations.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image023.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image023.png
deleted file mode 100755
index 1d32d035..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image023.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image024.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image024.png
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image024.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_notes_pane.htm
deleted file mode 100755
index 3d3f0e48..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Finally, we can now
-  start an analysis.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>We ask a simple
-  question:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Do differences in this
-  particular App transcript steady-state abundance level correlate with those
-  of any other transcripts in the same INIA Brain mRNA M430 data set?</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>1.</font><font
-  face=Helvetica size=2>You can CHOOSE many other DATABASES at this point if
-  you want, but for now let�s stick with the default.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. There are different
-  ways to sort the correlations. The most obvious is by p-value (most
-  significant values at the top of the list), but it is also interesting to
-  sort the top 100 or top 500 by their gene symbol (gene ID) or by their
-  chromosomal location (position).</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>3. If you don�t want
-  your analysis to be sensitive to outliers, then you may want to choose to use
-  the Spearman Rank Order method of calculating correlations.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011.htm
deleted file mode 100755
index 362057fc..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011.htm
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@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
-<!--.sld
-	{left:0px !important;
-	width:6.0in !important;
-	height:4.5in !important;
-	font-size:76% !important;}
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-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0011.htm"
-if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
-	parent.base.g_done = 1;
-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return;
-if( MakeNotesVis() ) return;
-LoadSld( gId );
-playList();MakeSldVis(1);
-//-->
-</script>
-</head>
-<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
-onresize="_RSW()" onkeypress="_KPH(event)">
-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:.35%;left:-.79%;width:93.64%;height:14.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:96.6%;
-height:51.21%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Transcript neighborhoods</span></div>
-</div>
-<img border=0 src="slide0011_image025.png" style='position:absolute;top:7.77%;
-left:2.51%;width:85.82%;height:91.87%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>The Traits Correlation
-  output window (Correlation Results) compares App expression data with all
-  other traits in this INIA Brain data set. The most significant 100 or 500
-  transcripts are sorted by their p-values. The top correlation is that of the
-  probe set to itself (often a value of 1.0, but in this case we modified the
-  App values manually by windsorizing the data). The next best correlation is
-  to another App probe set. The fourth correlation is interesting and suggests
-  that there may be a link between App and a particular type of ataxia (Atcay).</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>1.</font><font
-  face=Helvetica size=3>Use the checkboxes to the far left to select traits
-  that you want to study together. Once you have selected interesting traits,
-  click on the ADD SELECTION button. This puts all of the selected traits into
-  a SELECTIONS WINDOW for other types of analysis.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. The p-value is not
-  corrected for multiple tests. A conservative approach for array data would be
-  to assume 10,000 nominally independent tests. Subtract 4 from the exponent
-  and if the value is still smaller than 0.05 you may have a real correlation.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>3. The LITERATURE
-  CORRELATION is a data type generated by Drs. Ramin Homayouni and Michael
-  Berry. Click on the header column by the asterisk for more information on
-  this highly useful data type.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>4. We are using Pearson
-  product moment correlations rather that the Spearman rank order correlation.
-  But you can select either in the previous step.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_image025.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_image025.png
deleted file mode 100755
index d29a333f..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_image025.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_notes_pane.htm
deleted file mode 100755
index 1f0dd0d1..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>The Traits Correlation
-  output window (Correlation Results) compares App expression data with all
-  other traits in this INIA Brain data set. The most significant 100 or 500
-  transcripts are sorted by their p-values. The top correlation is that of the
-  probe set to itself (often a value of 1.0, but in this case we modified the
-  App values manually by windsorizing the data). The next best correlation is
-  to another App probe set. The fourth correlation is interesting and suggests
-  that there may be a link between App and a particular type of ataxia (Atcay).</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>1.</font><font
-  face=Helvetica size=2>Use the checkboxes to the far left to select traits
-  that you want to study together. Once you have selected interesting traits,
-  click on the ADD SELECTION button. This puts all of the selected traits into
-  a SELECTIONS WINDOW for other types of analysis.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. The p-value is not
-  corrected for multiple tests. A conservative approach for array data would be
-  to assume 10,000 nominally independent tests. Subtract 4 from the exponent
-  and if the value is still smaller than 0.05 you may have a real correlation.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>3. The LITERATURE
-  CORRELATION is a data type generated by Drs. Ramin Homayouni and Michael
-  Berry. Click on the header column by the asterisk for more information on
-  this highly useful data type.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>4. We are using Pearson
-  product moment correlations rather that the Spearman rank order correlation.
-  But you can select either in the previous step.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012.htm
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
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-<meta name=Description content=Aug-15-05>
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-	{left:0px !important;
-	width:6.0in !important;
-	height:4.5in !important;
-	font-size:76% !important;}
-->
-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0012.htm"
-if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
-	parent.base.g_done = 1;
-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return;
-if( MakeNotesVis() ) return;
-LoadSld( gId );
-playList();MakeSldVis(1);
-//-->
-</script>
-</head>
-<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
-onresize="_RSW()" onkeypress="_KPH(event)">
-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:.35%;left:1.72%;width:93.64%;height:14.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:96.6%;
-height:51.21%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> and </span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>Atcay</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript scatterplot </span></div>
-</div>
-<img border=0 src="slide0012_image026.png" style='position:absolute;top:8.48%;
-left:5.03%;width:66.22%;height:91.16%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>By clicking on the
-  CORRELATION of the Atcay transcript to the App transcript, you can generate a
-  Correlation plot between these two transcripts. In this App and Atcay
-  scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
-  have low App and Atcay expressions. The two parental strains and the F1 are
-  also included in this plot.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_image026.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_image026.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_image026.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_notes_pane.htm
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-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>By clicking on the
-  CORRELATION of the Atcay transcript to the App transcript, you can generate a
-  Correlation plot between these two transcripts. In this App and Atcay
-  scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
-  have low App and Atcay expressions. The two parental strains and the F1 are
-  also included in this plot.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013.htm
deleted file mode 100755
index 5aa623bf..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
-<!--.sld
-	{left:0px !important;
-	width:6.0in !important;
-	height:4.5in !important;
-	font-size:76% !important;}
-->
-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0013.htm"
-if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
-	parent.base.g_done = 1;
-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return;
-if( MakeNotesVis() ) return;
-LoadSld( gId );
-playList();MakeSldVis(1);
-//-->
-</script>
-</head>
-<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
-onresize="_RSW()" onkeypress="_KPH(event)">
-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:.35%;left:.79%;width:99.47%;height:14.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
-mso-text-indent-alt:56;position:absolute;top:0%;left:1.99%;width:96.8%;
-height:51.21%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript and eight of
-its neighbors</span></div>
-</div>
-<img border=0 src="slide0013_image027.png" style='position:absolute;top:9.71%;
-left:2.51%;width:83.84%;height:90.1%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>A group of traits from
-  many different databases can be selected and brought together for joint
-  analysis. In this case all of the content of the BXD SELECTIONS is from a
-  single BRAIN database, the top 20 neighbors of the App transcript from the
-  Correlation Results table. Eight of these neighbors plus App is shown in the
-  slide.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>1.</font><font
-  face=Helvetica size=3>All of items in the BXD SELECTIONS were selected using
-  the SELECT ALL button</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. The buttons at the
-  top (and bottom) of this page can do some cool stuff. We will work with
-  NETWORK GRAPH first.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>3. Think of the
-  SELECTIONS as your shopping cart. You go to different aisles in the
-  supermarket to acquire different types of items of interest. These could
-  include transcripts, classical phenotypes (longevity, brain weight, prepulse
-  inhibition, iron levels in midbrain). �Checking out� in this case involves
-  doing some analysis with the items in the cart.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>4. Different tools
-  handle different numbers of items. Most will handle up to 100 traits.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_image027.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_image027.png
deleted file mode 100755
index ba473846..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_image027.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_notes_pane.htm
deleted file mode 100755
index 4d56b194..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>A group of traits from
-  many different databases can be selected and brought together for joint
-  analysis. In this case all of the content of the BXD SELECTIONS is from a
-  single BRAIN database, the top 20 neighbors of the App transcript from the
-  Correlation Results table. Eight of these neighbors plus App is shown in the
-  slide.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>1.</font><font
-  face=Helvetica size=2>All of items in the BXD SELECTIONS were selected using
-  the SELECT ALL button</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. The buttons at the
-  top (and bottom) of this page can do some cool stuff. We will work with
-  NETWORK GRAPH first.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>3. Think of the
-  SELECTIONS as your shopping cart. You go to different aisles in the
-  supermarket to acquire different types of items of interest. These could
-  include transcripts, classical phenotypes (longevity, brain weight, prepulse
-  inhibition, iron levels in midbrain). �Checking out� in this case involves
-  doing some analysis with the items in the cart.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>4. Different tools
-  handle different numbers of items. Most will handle up to 100 traits.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014.htm
deleted file mode 100755
index 156a5132..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description
-content="Aug-15-05: App transcript coexpression neighborhood">
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
-<!--.sld
-	{left:0px !important;
-	width:6.0in !important;
-	height:4.5in !important;
-	font-size:76% !important;}
-->
-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0014.htm"
-if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
-	parent.base.g_done = 1;
-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
-if( !IsSldOrNts() ) return;
-if( MakeNotesVis() ) return;
-LoadSld( gId );
-playList();MakeSldVis(1);
-//-->
-</script>
-</head>
-<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
-onresize="_RSW()" onkeypress="_KPH(event)">
-<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:82.15%;left:4.1%;width:96.15%;height:18.19%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'></div>
-<div style='position:absolute;top:-2.29%;left:.79%;width:105.43%;height:12.54%;
-filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
-<div class=T style='position:absolute;top:19.71%;left:1.25%;width:98.74%;
-height:61.97%'><span style='font-size:82%'><i>App</i></span><span
-style='font-size:82%'> transcript coexpression neighborhood</span><span
-style='mso-special-format:lastCR;display:none'><br>
-</span></div>
-</div>
-<img border=0 src="slide0014_image029.png" style='position:absolute;top:37.8%;
-left:1.72%;width:97.48%;height:62.19%'><img border=0
-src="slide0014_image031.png" style='position:absolute;top:11.13%;left:1.72%;
-width:79.47%;height:25.44%'><img border=0 src="slide0014_image033.png"
-style='position:absolute;top:10.6%;left:81.32%;width:18.8%;height:9.89%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Output of the Network
-  Graph. Warm colors (orange and red) are positive correlations above 0.5
-  whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>1.</font><font
-  face=Helvetica size=3> All of the nodes (gene/transcripts) on this graph are
-  clickable.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. For this graph the
-  App expression values have �reverted� to their pre-Windsorized values.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>3. To generate this
-  graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
-  </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
-  curved lines (aka �edges�).</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image029.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image029.png
deleted file mode 100755
index 8f560834..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image029.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image031.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image031.png
deleted file mode 100755
index 8d72b4c1..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image031.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image033.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image033.png
deleted file mode 100755
index c1cd1c01..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image033.png
+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_notes_pane.htm
deleted file mode 100755
index 728a1a82..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Output of the Network
-  Graph. Warm colors (orange and red) are positive correlations above 0.5
-  whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>1.</font><font
-  face=Helvetica size=2> All of the nodes (gene/transcripts) on this graph are
-  clickable.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. For this graph the
-  App expression values have �reverted� to their pre-Windsorized values.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>3. To generate this
-  graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
-  </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
-  curved lines (aka �edges�).</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015.htm
deleted file mode 100755
index c2a26be3..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
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-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
-<!--.sld
-	{left:0px !important;
-	width:6.0in !important;
-	height:4.5in !important;
-	font-size:76% !important;}
-->
-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0015.htm"
-if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
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-	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
-}
-if( !IsNts() ) Redirect( "PPTSld", gId );
-var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
-//-->
-</script><script for=window event=onload language=JavaScript><!--
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-playList();MakeSldVis(1);
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-</head>
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-onresize="_RSW()" onkeypress="_KPH(event)">
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-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:0%;left:.79%;width:93.64%;height:14.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
-mso-text-indent-alt:0;position:absolute;top:0%;left:1.13%;width:97.59%;
-height:51.21%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Correlations of </span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></div>
-</div>
-<img border=0 src="slide0015_image034.png" style='position:absolute;top:28.97%;
-left:4.1%;width:78.27%;height:70.84%'><img border=0 src="slide0015_image035.png"
-style='position:absolute;top:8.12%;left:4.1%;width:33.5%;height:19.61%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Going back to the Trait
-  Data and Analysis Form window, we have computed the correlations between
-  strain variation in App expression level and other classical phenotypes that
-  have already been measured in many of the same BXD strains.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=3>1.</font><font
-  face=Helvetica size=3>The number of common strains varies widely--in this
-  case from 14 to 23 strains.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>2. We can add these
-  traits (four are selected) to our BXD SELECTIONS window.</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image034.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image034.png
deleted file mode 100755
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+++ /dev/null
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image035.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image035.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image035.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_notes_pane.htm
deleted file mode 100755
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-</head>
-<body bgcolor=black text=white>
-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Going back to the Trait
-  Data and Analysis Form window, we have computed the correlations between
-  strain variation in App expression level and other classical phenotypes that
-  have already been measured in many of the same BXD strains.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Arial size=2>1.</font><font
-  face=Helvetica size=2>The number of common strains varies widely--in this
-  case from 14 to 23 strains.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>2. We can add these
-  traits (four are selected) to our BXD SELECTIONS window.</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
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-<style media=print>
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-gId="slide0016.htm"
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-width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:0%;left:.79%;width:99.47%;height:10.24%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
-mso-text-indent-alt:0;position:absolute;top:0%;left:1.06%;width:98.66%;
-height:72.41%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Network Graph of </span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></div>
-</div>
-<img border=0 src="slide0016_image036.png" style='position:absolute;top:8.3%;
-left:3.31%;width:88.21%;height:90.63%'></div>
-<div id=NotesObj style='display:none'>
-<table style='color:white' border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>We have computed the
-  Network Graph, now using other types of traits.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Saline Hot Plate Latency
-  is the green node labeled 10020.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Freezing (fear) is the
-  green node labeled 10447.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-  </td>
- </tr>
-</table>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_image036.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_image036.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_image036.png
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
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-</head>
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-<table border=0 width="100%">
- <tr>
-  <td width=5 nowrap></td>
-  <td width="100%"></td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>We have computed the
-  Network Graph, now using other types of traits.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Saline Hot Plate Latency
-  is the green node labeled 10020.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Freezing (fear) is the
-  green node labeled 10447.</font><br>
-  </td>
- </tr>
- <tr>
-  <td colspan=1></td>
-  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0017.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0017.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0017.htm
+++ /dev/null
@@ -1,25 +0,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=macintosh">
-<meta name=ProgId content=PowerPoint.Slide>
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-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
-<meta name=Description content=Aug-15-05>
-<link rel=Stylesheet href="master03_stylesheet.css">
-<style media=print>
-<!--.sld
-	{left:0px !important;
-	width:6.0in !important;
-	height:4.5in !important;
-	font-size:76% !important;}
-->
-</style>
-<script language=JavaScript src=script.js></script><script language=JavaScript><!--
-gId="slide0017.htm"
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-//-->
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-onresize="_RSW()" onkeypress="_KPH(event)">
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-visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
-style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
-<div style='position:absolute;top:1.41%;left:3.31%;width:93.64%;height:14.48%;
-filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
-<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
-mso-text-indent-alt:0;position:absolute;top:0%;left:1.13%;width:97.59%;
-height:51.21%'><span style='mso-special-format:nobullet;display:none;
-color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 1:</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></div>
-</div>
-<div style='position:absolute;top:10.77%;left:8.47%;width:100.79%;height:47.87%'>
-<div class=O1 style='mso-margin-left-alt:432'></div>
-<div class=O2 style='mso-margin-left-alt:720'></div>
-<div class=O3 style='mso-margin-left-alt:1008'></div>
-<div class=O4 style='mso-margin-left-alt:1296'></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:0%;
-left:0%;width:90.14%;height:11.07%'><span style='position:absolute;top:0%;
-left:2.76%;width:97.23%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-2.84%;font-family:Arial'>1.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You have learned the basics
-about searching for traits<br>
-</span></span></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:11.43%;
-left:0%;width:84.88%;height:11.07%'><span style='position:absolute;top:0%;
-left:2.94%;width:97.05%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-3.03%;font-family:Arial'>2.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know some methods to check
-data quality<br>
-</span></span></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:22.5%;
-left:0%;width:84.88%;height:11.07%'><span style='position:absolute;top:0%;
-left:2.94%;width:97.05%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-3.03%;font-family:Arial'>3.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to edit bad or
-suspicious data<br>
-</span></span></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:33.57%;
-left:0%;width:90.01%;height:11.07%'><span style='position:absolute;top:0%;
-left:2.77%;width:97.22%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-2.85%;font-family:Arial'>4.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to review the
-basic statistics of a trait<br>
-</span></span></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:44.64%;
-left:0%;width:93.56%;height:22.14%'><span style='position:absolute;top:0%;
-left:2.66%;width:97.33%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-2.74%;font-family:Arial'>5.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
-scattergram between two </span></span><span style='position:absolute;
-top:50.0%;left:2.66%;width:88.06%'><span style='font-family:"Gill Sans";
-font-size:200%;color:#E9EB5D;mso-color-index:3'>traits using the Traits
-Correlation tool<br>
-</span></span></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:66.78%;
-left:0%;width:100.0%;height:11.07%'><span style='position:absolute;top:0%;
-left:2.49%;width:97.5%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-2.56%;font-family:Arial'>6.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to add items to
-your SELECTIONS window<br>
-</span></span></div>
-<div class=O style='mso-margin-left-alt:144;position:absolute;top:77.85%;
-left:0%;width:99.34%;height:22.14%'><span style='position:absolute;top:0%;
-left:2.51%;width:97.48%'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
-position:absolute;left:-2.57%;font-family:Arial'>7.</span></span><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
-Network Graph of traits that </span></span><span style='position:absolute;
-top:51.66%;left:2.51%;width:82.93%'><span style='font-family:"Gill Sans";
-font-size:200%;color:#E9EB5D;mso-color-index:3'>co-vary. </span></span></div>
-</div>
-<div class=O style='position:absolute;top:67.31%;left:5.96%;width:105.29%;
-height:26.5%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'>What does genetic covariance mean? The genetic covariance can </span></span><span
-style='position:absolute;top:20.0%;left:0%;width:96.1%'><span style='font-family:
-"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:3'>be functional and
-mechanistic, but it can also be due to linkage </span></span><span
-style='position:absolute;top:40.0%;left:0%;width:95.97%'><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'>disequilibrium. Finally, it can be due to sampling error or poor </span></span><span
-style='position:absolute;top:60.66%;left:0%;width:87.92%'><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'>experimental design. Evaluate the biological plausibility of </span></span><span
-style='position:absolute;top:80.66%;left:0%;width:85.28%'><span
-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'>correlations. Test and be skeptical.</span></span></div>
-</div>
-<script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
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-<html>
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-</script>
-<div><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
-mso-color-index:3'><i>You can also download this PowerPoint at<br>
-</i></span></div>
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-<div><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
-mso-color-index:3'><i>ftp://atlas.utmem.edu/public/webqtl_demo2.ppt </i></span><span
-style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
-3;mso-special-format:lastCR;display:none'><br>
-</span></div>
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-</LAYER>
-
-<layer>
- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
-  <tr>
-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Welcome to a short
-   demonstration of the GeneNetwork and its WebQTL module. Please adjust the
-   size of the windows on your monitor so that you can see part of this page,
-   as well as GeneNetwork windows. WebQTL produces a large number of new
-   windows, so you may need to modify your browser preferences to permit
-   pop-ups. In this demonstration, we explore one important transcript
-   expressed in the brain: the amyloid beta precursor protein messenger RNA. A
-   protein product of this mRNA, the APP protein, is associated with
-   Alzheimer�s disease.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>My thanks to Dr. Robert
-   F. Clark and Wenli Cai for testing this PowerPoint demonstration and making
-   many improvements.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>(Initial version of
-   June 2003 by Rob Williams. Edits July 13, 2005 by RW and RFC. Edit July 14,
-   2005 by WC. Final edits by RF Clark, July 22, 2005.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019_notes_pane.htm
deleted file mode 100755
index e2cb435a..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019_notes_pane.htm
+++ /dev/null
@@ -1,5 +0,0 @@
-<html>
-<head>
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-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
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-  <td align=left colspan=1><font face=Verdana size=2>END</font><br>
-  </td>
- </tr>
-</table>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0020.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0020.htm
deleted file mode 100755
index da8b9759..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0020.htm
+++ /dev/null
@@ -1,172 +0,0 @@
-<html>
-<head>
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-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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-document.captureEvents(Event.KEYPRESS);
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-<div style='mso-line-spacing:"-224 0 0"'><span style='font-family:"Gill Sans";
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-<div style='mso-line-spacing:"-224 0 0"'><span style='font-family:"Gill Sans";
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-style='font-family:"Gill Sans";font-size:250%;color:#E9EB5D;mso-color-index:
-3;mso-special-format:lastCR;display:none'><i><br>
-</i></span></div>
-</layer></div>
-</layer></div>
-</layer><script>
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-<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
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- font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
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-
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- <table style='color:white' border=0 width="100%">
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-   site:<span style="mso-spacerun: yes">&nbsp;
-   </span>http://www.genenetwork.org</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>To begin a search you
-   make choices about what species, group, and database to explore.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>For this demonstration
-   enter APP as above and click on the SEARCH button. Make sure that the
-   DEFAULT SETTINGS are species = Mouse, Group = BXD, Type = Whole Brain, and
-   Database = INIA BRAIN mRNA M430 (Apr05) PDNN.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>1. The GeneNetwork and
-   WebQTL are often used to work with public data sets. However, it is possible
-   to enter and analyze your own data for specific genetic reference
-   populations such as the BXD genetic reference population of mice or the HXB
-   strains of rat. Entering your own data is a more advanced topic, but if you
-   click on the HOME pop-down menu (upper left), you will see �Enter Trait
-   Data� that will explain the process.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>2.</font><font
-   face=Helvetica size=3> For help on advanced searching methods read the left
-   side of the page (INTRODUCTION).<span style="mso-spacerun: yes">&nbsp;
-   </span>If you make a search term too complex, you may get no hits (try
-   entering �amyloid beta� for example). If you make it too simple, you may
-   also get too many.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>3.</font><font
-   face=Helvetica size=3> Use the asterisk * as a wildcard. For example, to
-   find all <i>Hoxb</i> transcripts, search for Hoxb*.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>4.</font><font
-   face=Helvetica size=3> In some cases you can also research for transcripts
-   and genes using special search strings such as �</font><font face=Geneva
-   size=3>Mb = (Chr1, 100 102)� to find all genes on Chromosome 1 between 98
-   and 104 megabases (don�t actually use the quotes). Details are described at </font><font
-   face=Verdana size=3>http://www.genenetwork.org/searchHelp.html</font><font
-   face=Geneva size=3>.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>5.<span
-   style="mso-spacerun: yes">&nbsp;&nbsp; </span>These INFO buttons provide
-   links to data about the different data types. Try them.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>6.<span
-   style="mso-spacerun: yes">&nbsp; </span>The SET TO DEFAULT button is used to
-   change the database default setting to match your typical search categories.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0021.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0021.htm
deleted file mode 100755
index 0e0eb529..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0021.htm
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-<layer>
- <div id=NotesObj style='display:none'>
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-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>SHORT DETOUR to the
-   HELP menu. If you are new to the GeneNetwork, you may find it helpful to
-   review the The Glossary and FAQ pages shown above. We are in the process of
-   making �live� demos for some of the key modules in the GeneNetwork. Check
-   the NEWS every month or two to find out about new features.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0022.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0022.htm
deleted file mode 100755
index 663a5f0f..00000000
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-mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
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-style='mso-special-format:lastCR;display:none'><br>
-</span></div>
-</layer></div>
-</layer></div>
-</LAYER>
-
-<layer>
- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
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-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>RESULTS OF THE APP
-   SEARCH.<span style="mso-spacerun: yes">&nbsp; </span>A search of the INIA
-   Brain database generates 18 matches, 10 of which are shown above. The
-   GeneNetwork will display several hundred matches in pages of 40 each. If a
-   search generates a larger numbers of hits, then you will need to refine
-   search terms.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>1. APP is a great
-   transcript to introduce you to the complexity and power of new array
-   platforms that often provide �alternative� expression estimates for single
-   genes. There are seven probe sets that target different parts of the APP
-   transcript. Which of the alternative measurements is most appropriate and
-   informative? Have a look at the FAQ page for more on this topic, but general
-   advice: 1. be skeptical and try to validate that the correct transcript and
-   gene is being measured; 2. check what part of the transcript is
-   complementary to the probes; 3. evaluate the performance of individual
-   probes based on expression level, signal-to-noise and other error terms such
-   as the standard deviation and error.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. In this particular
-   case we have highlighted and selected # 5 on this SEARCH RESULTS page. The
-   annotation for this probe set mentions that it targets the last three exons
-   and the 3� untranslated region (UTR) of the amyloid precursor protein (APP).<span
-   style="mso-spacerun: yes">&nbsp; </span>That is just what we want.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>3. Most probe sets have
-   not been annotated in as much detail as App. Refer tot the FAQ to learn how
-   to annotate probe sets yourself.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0023.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0023.htm
deleted file mode 100755
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-<html>
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-display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:94%;color:#E9EB5D;mso-color-index:3'>First page of data: The
-Trait Data and Analysis Form</span><span style='font-size:106%;color:#E9EB5D;
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-</span></div>
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-</layer></div>
-</layer></div>
-</layer></div>
-</LAYER>
-
-<layer>
- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
-  <tr>
-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>The Trait Data and
-   Analysis Form is the single most important page from the point of view of
-   working with GeneNetwork data. Please read the text carefully. Explore the
-   links, but do not close this page. We will need it many more times in this
-   demonstration.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>1. What is this
-   database? It is called INIA Brain mRNA M430 (Apr05) PDNN, but what does that
-   actually mean. How much of the brain was used? How were the animals
-   processed? Most of these types of questions can be answered by clicking on
-   the DATABASE link.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. Transcript/gene
-   LOCATION data is usually from the most recent assembly. You can VERIFY the
-   location of the probes and probe set using the two VERIFY buttons. VERIFY
-   UCSC performs a sequence alignment (BLAT analysis) of the probes to the most
-   recent assembly.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>3. The PROBE TOOL
-   button provides you with highly detailed information on the probe sequences
-   used to assemble the probe set. For example, in this case you can find out
-   which probes correspond to which of the three exons. You can also review the
-   performance of the individual probes. Please check the GLOSSARY for
-   additional details on probes.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>4. The identifiers
-   (IDs) provide links to other key resources.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0024.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0024.htm
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--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0024.htm
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-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Most of the database
-   components and resources in The GeneNetwork are linked to metadata pages
-   that provide a human-readable summary of how, why, where, when, and with
-   whom the data were generated. Before you get too involved with a data set,
-   it is naturally important to read this information. While the data in The
-   GeneNetwork may be accessible and useful, that does not always mean that the
-   data is public domain and available for you to use in publication or for
-   profit purposes. If you want to know more about the data ownership and
-   usage, please read through the POLICIES pop-down menu items.</font><br>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0025.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0025.htm
deleted file mode 100755
index 32820d64..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0025.htm
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-style='text-align:left'><span style='font-family:"Gill Sans";font-size:183%;
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-
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- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
-  <tr>
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-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>This slide shows you
-   the lower parts of the Trait Data and Analysis Form with the data for the
-   first set of BXD strains</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
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-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0026.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0026.htm
deleted file mode 100755
index 7dac49e1..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0026.htm
+++ /dev/null
@@ -1,130 +0,0 @@
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-<script>
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-</span></div>
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-style='text-align:left'><span style='font-family:"Gill Sans";font-size:150%;
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-trustworthy. BXD8 is an obvious outlier without </span></span></layer><script>
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-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>The Basic Statistics
-   page allows you to evaluate some aspects of the data quality. In this case,
-   BXD8 is a potential problem. An outlier of this type may be generated by a
-   technical artifact (bad sample?). However, it is also possible that BXD8
-   just has genuine low endogenous expression of App and may therefore be a
-   particularly valuable model for research. There are different ways to treat
-   problematic data of these types. One way is simply to discard this datum.
-   The other way is to prevent outliers from have too much influence
-   quantitatively, while leaving them in their low (or high positions). This is
-   called windsorizing the data (after King Henry the VIII who had a habit of
-   chopping heads). In this case, we have windsorized the BXD8 to a value of 16.0
-   and the BXD33 to a value of 16.02. Rank is retained. We are making a bet
-   that the two lowest strains are really low, but we are hedging our bet and
-   just making them a little lower than BXD90. This removes their �undue�
-   influence.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>1. It turns out that
-   BXD8 is a strain with many odd phenotypes. The whole strain is essentially
-   an outlier for many traits. Therefore, the low App expression data may be
-   quite accurate. Still, it would be comforting to have at least two more
-   replicates.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0027.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0027.htm
deleted file mode 100755
index 0a23d59d..00000000
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-   better feel for the variation in the error among the cases. Those without
-   error bars are of course the �noisiest� of all. This data set is not
-   complete yet (the aim is to acquire at least one male-female sample for each
-   BXD strain).</font><br>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0028.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0028.htm
deleted file mode 100755
index cde4a136..00000000
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-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Finally, we can now
-   start an analysis.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>We ask a simple
-   question:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Do differences in this
-   particular App transcript steady-state abundance level correlate with those
-   of any other transcripts in the same INIA Brain mRNA M430 data set?</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>1.</font><font
-   face=Helvetica size=3>You can CHOOSE many other DATABASES at this point if
-   you want, but for now let�s stick with the default.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. There are different
-   ways to sort the correlations. The most obvious is by p-value (most
-   significant values at the top of the list), but it is also interesting to
-   sort the top 100 or top 500 by their gene symbol (gene ID) or by their
-   chromosomal location (position).</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>3. If you don�t want
-   your analysis to be sensitive to outliers, then you may want to choose to
-   use the Spearman Rank Order method of calculating correlations.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0029.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0029.htm
deleted file mode 100755
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-348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
-display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
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-  <tr>
-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>The Traits Correlation
-   output window (Correlation Results) compares App expression data with all
-   other traits in this INIA Brain data set. The most significant 100 or 500
-   transcripts are sorted by their p-values. The top correlation is that of the
-   probe set to itself (often a value of 1.0, but in this case we modified the
-   App values manually by windsorizing the data). The next best correlation is
-   to another App probe set. The fourth correlation is interesting and suggests
-   that there may be a link between App and a particular type of ataxia
-   (Atcay).</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>1.</font><font
-   face=Helvetica size=3>Use the checkboxes to the far left to select traits
-   that you want to study together. Once you have selected interesting traits,
-   click on the ADD SELECTION button. This puts all of the selected traits into
-   a SELECTIONS WINDOW for other types of analysis.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. The p-value is not
-   corrected for multiple tests. A conservative approach for array data would
-   be to assume 10,000 nominally independent tests. Subtract 4 from the
-   exponent and if the value is still smaller than 0.05 you may have a real
-   correlation.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>3. The LITERATURE
-   CORRELATION is a data type generated by Drs. Ramin Homayouni and Michael
-   Berry. Click on the header column by the asterisk for more information on
-   this highly useful data type.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>4. We are using Pearson
-   product moment correlations rather that the Spearman rank order correlation.
-   But you can select either in the previous step.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0030.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0030.htm
deleted file mode 100755
index b84e4aad..00000000
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-<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
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-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> and </span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>Atcay</i></span><span
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-
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- <div id=NotesObj style='display:none'>
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-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>By clicking on the
-   CORRELATION of the Atcay transcript to the App transcript, you can generate
-   a Correlation plot between these two transcripts. In this App and Atcay
-   scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
-   have low App and Atcay expressions. The two parental strains and the F1 are
-   also included in this plot.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
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-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0031.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0031.htm
deleted file mode 100755
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-display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
-style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript and eight of
-its neighbors</span></div>
-</layer></div>
-</layer><script>
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-</layer></div>
-</LAYER>
-
-<layer>
- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
-  <tr>
-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>A group of traits from
-   many different databases can be selected and brought together for joint
-   analysis. In this case all of the content of the BXD SELECTIONS is from a
-   single BRAIN database, the top 20 neighbors of the App transcript from the
-   Correlation Results table. Eight of these neighbors plus App is shown in the
-   slide.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>1.</font><font
-   face=Helvetica size=3>All of items in the BXD SELECTIONS were selected using
-   the SELECT ALL button</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. The buttons at the
-   top (and bottom) of this page can do some cool stuff. We will work with
-   NETWORK GRAPH first.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>3. Think of the
-   SELECTIONS as your shopping cart. You go to different aisles in the
-   supermarket to acquire different types of items of interest. These could
-   include transcripts, classical phenotypes (longevity, brain weight, prepulse
-   inhibition, iron levels in midbrain). �Checking out� in this case involves
-   doing some analysis with the items in the cart.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>4. Different tools
-   handle different numbers of items. Most will handle up to 100 traits.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0032.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0032.htm
deleted file mode 100755
index 85ee47fe..00000000
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-</script>
-<div></div>
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-</script>
-<div><script>
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-	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
-</script>
-<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
-font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
-mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
-mso-text-raise:0%'><span style='font-size:82%'><i>App</i></span><span
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-</span></div>
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-</layer></div>
-</LAYER>
-
-<layer>
- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
-  <tr>
-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Output of the Network
-   Graph. Warm colors (orange and red) are positive correlations above 0.5
-   whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>1.</font><font
-   face=Helvetica size=3> All of the nodes (gene/transcripts) on this graph are
-   clickable.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. For this graph the
-   App expression values have �reverted� to their pre-Windsorized values.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>3. To generate this
-   graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
-   </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
-   curved lines (aka �edges�).</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0033.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0033.htm
deleted file mode 100755
index 042ca4ad..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0033.htm
+++ /dev/null
@@ -1,104 +0,0 @@
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-292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
-292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
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-style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
-display:none'><br>
-</span></div>
-</layer></div>
-</layer><script>
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-</layer></div>
-</LAYER>
-
-<layer>
- <div id=NotesObj style='display:none'>
- <table style='color:white' border=0 width="100%">
-  <tr>
-   <td width=5 nowrap></td>
-   <td width="100%"></td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Going back to the Trait
-   Data and Analysis Form window, we have computed the correlations between
-   strain variation in App expression level and other classical phenotypes that
-   have already been measured in many of the same BXD strains.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Arial size=3>1.</font><font
-   face=Helvetica size=3>The number of common strains varies widely--in this
-   case from 14 to 23 strains.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>2. We can add these
-   traits (four are selected) to our BXD SELECTIONS window.</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0034.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0034.htm
deleted file mode 100755
index 3cf1ac70..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0034.htm
+++ /dev/null
@@ -1,93 +0,0 @@
-<html>
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-<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
-<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
-genomics</title>
-<link title="Presentation File" type="application/powerpoint" rel=alternate
-href="webqtl_demo2_part1.ppt.ppt">
-<script>
-if ( ! top.PPTPRESENTATION ) {
-	window.location.replace( "endshow.htm" );
-}
-</script>
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-
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-   <td width="100%"></td>
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-  <tr>
-   <td colspan=1></td>
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-   Network Graph, now using other types of traits.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Saline Hot Plate
-   Latency is the green node labeled 10020.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Freezing (fear) is the
-   green node labeled 10447.</font><br>
-   </td>
-  </tr>
-  <tr>
-   <td colspan=1></td>
-   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
-   </td>
-  </tr>
- </table>
- </div>
-</layer>
-<script language=JavaScript><!--
-//-->
-</script><script language=JavaScript><!--
-function playList() {
-
-}
-//-->
-</script>
-</body>
-</html>
-\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0035.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0035.htm
deleted file mode 100755
index ca5ac8bb..00000000
--- a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0035.htm
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@@ -1,151 +0,0 @@
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-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
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-</span></span></layer></div>
-</layer><script>
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-144;mso-margin-left-alt:144'><script>
-	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.88 * g_width;
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-style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
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-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to review the
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-</span></span></layer></div>
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-style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
-color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
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-style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
-scattergram between two </span></span></layer><script>
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-style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
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-</span></span></layer></div>
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-3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to add items to
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-</span></span></layer></div>
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-style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0036.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0036.htm
deleted file mode 100755
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author	zsloan	2015-03-27 20:28:51 +0000
committer	zsloan	2015-03-27 20:28:51 +0000
commit	d0911a04958a04042da02a334ccc528dae79cc17 (patch)
tree	3c48e2e937c1dbeaf00a5697c87ed251afa5c8f1 /web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files
parent	a840ad18e1fe3db98a359a159e9b9b72367a2839 (diff)
download	genenetwork2-d0911a04958a04042da02a334ccc528dae79cc17.tar.gz