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| author | Zachary Sloan | 2013-06-20 22:20:23 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2013-06-20 22:20:23 +0000 |
| commit | 4ffee373494170e708678039dca132f1bd729ab1 (patch) | |
| tree | a9d6054380f5a9d612a4d1d88889f68ea4923a75 /web/genotypes/HXBBXH.geno | |
| parent | 939058c4a3b668037974f2876b072c4be008da26 (diff) | |
| parent | 52ac4b6e1c014801080cbbcad53df868058d2657 (diff) | |
| download | genenetwork2-4ffee373494170e708678039dca132f1bd729ab1.tar.gz | |
Merge branch 'flask'
Diffstat (limited to 'web/genotypes/HXBBXH.geno')
| -rwxr-xr-x | web/genotypes/HXBBXH.geno | 581 |
1 files changed, 581 insertions, 0 deletions
diff --git a/web/genotypes/HXBBXH.geno b/web/genotypes/HXBBXH.geno new file mode 100755 index 00000000..eaee593b --- /dev/null +++ b/web/genotypes/HXBBXH.geno @@ -0,0 +1,581 @@ +#this is the corrected HXB/BXH RAT genotype file of Nov 2007, it should be tab-delimited +#Rob Williams redid the map order using Nov 2004 Rat Assembly (UCSC). Rob deleted two markers that could not be verfieid and that had high number of double recombinations. +#the first three/four columns should be ""Chr, Locus, cM, [Mb]"" (case sensitive) +#Not all markers were reBLATted to Nov 2004 assembly, but all markers with possible problems (confusion with mouse markers and genes) were reBLATted. +#please save as Unix format text file. +#comment line always start with a '#' +#type riset or intercross +@type:riset +#@type:intercross +@name:HXB/BXH +#abbreviation of maternal or paternal parents +@mat:B +@pat:D +#heterozygous , optional, default is ""H""" +@het:H +#Unknown , optional, default is ""U""" +@unk:U +#Last comment here +Chr Locus cM Mb HXB1 HXB2 HXB3 HXB4 HXB5 HXB7 HXB9 HXB10 HXB13 HXB14 HXB15 HXB16 HXB17 HXB18 HXB19 HXB20 HXB21 HXB22 HXB23 HXB24 HXB25 HXB26 HXB27 HXB29 HXB30 HXB31 BXH2 BXH3 BXH5 BXH6 BXH8 BXH9 BXH10 BXH11 BXH12 BXH13 +1 D1Rat327 0.0 8.210068 B D B D D B D D B B B B B B D B B D B D D B B B B B B D D D D B B D D B +1 D1Rat186 2.4 15.833506 D D B D D B D D B B B D B B D B B B B D D B B B B B B D D D D B B D D B +1 D1Mgh2 9.8 22.745906 D D B D D B D D B B D D D B B B D B B B D B B B B B B D D D B B B B D B +1 D1Utr61 12.3 27.000000 D D B D D B D D B B D D D B B B D D B B D D B B B B B D D D B B B B B B +1 Slc9a3 13.0 29.933852 D D B D D B D D B B D D D B B B D D B B D D B B B B B D D D D B B B B B +1 D1Rat15 15.4 37.801966 D B B D D B D D D B D D D B B B D B B B D D B B B B B D D D D B B B B B +1 D1Utr11 22.8 43.000000 D B B D D D B D D D B D D D B B D B B B D D D B B D B D D D D B B B B B +1 D1Mit9 23.5 43.843426 D B B D D D B D D D B D D B B B D B B B D D D B B D B D D D D B B B B B +1 D1Ntr8 25.1 46.000000 D D B D D D B D B D B D D B B B D B B B D D D B B D B D D D D B B B B B +1 D1Rat256 27.5 53.874952 D D D D D D B D B D D D D D B B D B B B D D D B B D B D D D D B B B B B +1 D1Pas1 30.0 60.000000 D D D D D D B D B D D D B D B B D B B D D D B B B D B D D D D B B B B B +1 D1Cebrp131s2 31.5 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