diff options
| author | Zachary Sloan | 2013-02-21 16:26:22 -0600 |
|---|---|---|
| committer | Zachary Sloan | 2013-02-21 16:26:22 -0600 |
| commit | d391c4ca17a32c672b6aa65bb586d73eee4b48fc (patch) | |
| tree | 0b38104590d5f01b7eddd267f75a1c50fe659ed4 /web/genotypes/HXBBXH.geno.update.recal | |
| parent | acbccafc5683e13cb13e426fadf9b8a4c919c4c9 (diff) | |
| download | genenetwork2-d391c4ca17a32c672b6aa65bb586d73eee4b48fc.tar.gz | |
Adding genotypes and new_genotypes (json files) directories to git
so they can be pulled to the new EC2 server
Diffstat (limited to 'web/genotypes/HXBBXH.geno.update.recal')
| -rwxr-xr-x | web/genotypes/HXBBXH.geno.update.recal | 575 |
1 files changed, 575 insertions, 0 deletions
diff --git a/web/genotypes/HXBBXH.geno.update.recal b/web/genotypes/HXBBXH.geno.update.recal new file mode 100755 index 00000000..37371bd3 --- /dev/null +++ b/web/genotypes/HXBBXH.geno.update.recal @@ -0,0 +1,575 @@ +#this is HXB/BXH genotype file, it should be tab-delimited +#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive) +#please save as Unix format text file. +#comment line always start with a '#' +#type riset or intercross +@type:riset +#@type:intercross +@name:HXB/BXH +#abbreviation of maternal or paternal parents +@mat:B +@pat:D +#heterozygous , optional, default is "H" +@het:H +#Unknown , optional, default is "U" +@unk:U +#UBDHCZ12 +Chr Locus cM Mb HXB1 HXB2 HXB3 HXB4 HXB5 HXB7 HXB9 HXB10 HXB13 HXB14 HXB15 HXB16 HXB17 HXB18 HXB19 HXB20 HXB21 HXB22 HXB23 HXB24 HXB25 HXB26 HXB27 HXB29 HXB30 HXB31 BXH2 BXH3 BXH5 BXH6 BXH8 BXH9 BXH10 BXH11 BXH12 BXH13 +1 D1Rat327 0.000 8.210299 B D B D D B D D B B B B B B D B B D B D D B B B B B B D D D D B B D D B +1 D1Rat186 2.439 15.833506 D D B D D B D D B B B D B B D B B B B D D B B B B B B D D D D B B D D B +1 D1Mgh2 9.821 22.745906 D D B D D B D D B B D D D B B B D B B B D B B B B B B D D D B B B B D B +1 D1Utr61 12.261 27.000000 D D B D D B D D B B D D D B B B D D B B D D B B B B B D D D B B B B B B +1 Slc9a3 12.991 29.933852 D D B D D B D D B B D D D B B B D D B B D D B B B B B D D D D B B B B B +1 D1Rat15 15.430 37.801966 D B B D D B D D D B D D D B B B D B B B D D B B B B B D D D D B B B B B +1 D1Utr11 22.812 43.000000 D B B D D D B D D D B D D D B B D B B B D D D B B D B D D D D B B B B B +1 D1Mit9 23.542 43.965608 D B B D D D B D D D B D D B B B D B B B D D D B B D B D D D D B B B B B +1 D1Ntr8 25.080 46.000000 D D B D D D B D B D B D D B B B D B B B D D D B B D B D D D D B B B B B +1 D1Rat256 27.520 53.874952 D D D D D D B D B D D D D D B B D B B B D D D B B D B D D D D B B B B B +1 D1Pas1 29.959 60.000000 D D D D D D B D B D D D B D B B D B B D D D B B B D B D D D D B B B B B +1 D1Cebrp131s2 31.498 68.000000 D D D D D D B D B D D D B D B B D B B D D D B B B D D D D D D B B D B B +1 D1Rat24 33.037 76.810806 D D D D D D B D B D D D B D B B D B B D D B B B B B D D D D D B B D B B +1 Cyp2b2 34.575 81.423192 D D D D D D B B B D D D B D B B D B D D D B B B B B D D D D D B B D B B +1 D1Rat212 36.114 83.000000 D D D D D D B B B D D D B D B B D B D D D B B B B B D D D D D D D D B B +1 D1Rat266 38.553 91.998231 D D D D D D B B B D D D B D B B D B D D D B B B B D B D B D D D D D B B +1 D1Rat30 43.432 100.618142 B D D D D D B B B D D D D D B B D D D D D B B B B D B D B D B D B D D B +1 D1Rat268 46.882 109.344883 B D D D D D B D D D D D D D B B D D D D D B B D B D B B B D B D B D D B +1 D1Arb11 47.612 122.541566 D D D D D D B D D D D D D D B B D D D D D B B D B D B B B D B D B D D B +1 D1Cebr31s2 48.342 123.000000 D D D D D D B D D D D D D D B B D D B D D B B D B D B B B D B D B D D B +1 D1Rat35 51.791 124.827265 B D D D D D B D D D D D D D B B D D B D B B B D B D B B B B B D B D B B +1 D1Rat270 56.382 130.368659 B D D D D D B D B D D D B B B B D D B B B B B D B D B B B B B B B D B B +1 D1Rat42 59.831 135.496747 B D B D D D B D B D B D B B B B D B B B B B B B B D B B B B B B B D B B +1 D1Rat47 65.721 158.590248 D D B D D B B D B D B D B B B B D B D B B D B B B D B D B B B B D D B B +1 D1Arb17 67.259 170.000000 D D B D D B B B B D B D B B B B D B D B B D B B B B B D B B B B D D B B +1 D1Cebr52s3 68.798 174.000000 D D B D D B B B B D B D B B B B D B D B B B B D B B B D B B B B D D B B +1 Scnn1g 70.336 180.695574 D D B D D B B B B D B D D B B B D B D B B B B D B B B D B B B D D D B B +1 D1Rat287 71.066 190.264130 D D B D D B B B B D B D D B B B D B D B B B B D B B B D B B B D B D B B +1 Mt1pa 71.796 191.000000 D D B D D B B B B D B D D B B B D B B B B B B D B B B D B B B D B D B B +1 D1Cebr10s3 77.685 198.000000 D D D D D B B B B D B D D D B B D D D B D B B D B B B D B B D D B D B B +1 D1Rat293 84.305 213.040485 D D B D D B B B B B B D D D B B D B B B D B B D B B D D B D D D B D D B +1 D1Rat71 85.843 216.821586 D D B D D B B B B B B D D D B B D B D D D B B D B B D D B D D D B D D B +1 D1Rat296 90.434 222.000000 D D B D D D B B B B B D D D B D D B D D B B B D B B D B B B D D B D D B +1 D1Mit34 97.815 231.189377 B D D D D D D B B B B D D B B D D B B D B B B D D B D B B B D D B D D D +1 Jak2 99.354 233.105439 B D D D D D D B B B B B B B B D D B B D B B B D D B D B B B D D B D D D +1 D1Rat77 101.793 238.101399 B D B D D D D B B B B B B B B D D B B D B B B D D B D B B B B B B D D D +1 D1Cebrp137s2 107.683 240.000000 B D B D B D D B B B B B D B B D D B B D D D B D D D D B B B B B B D D B +1 D1Cebrp29s6 108.413 241.000000 B D B D B D D B B B B B D B B D D B B D D D B D D D B B B B B B B D D B +1 D1Arb25 110.852 248.372940 B D D D B D D B B B B B D B B D D B B D D B B D B D B B B B B B B D D B +1 D1Utr51 111.582 249.000000 B D D D B D D B B B B B D B B D D B B D D D B D B D B B B B B B B D D B +1 D1Utr71 112.312 249.500000 B D D D B D D B B B B B D D B D D B B D D D B D B D B B B B B B B D D B +1 D1Rat81 113.850 250.380408 D D D D B D D B B B B B D D B B D B B D D D B D B D B B B B B B B D D B +1 D1Rat225 119.740 261.391328 D D D D B D D B B B D D D D B B D B B D D D B D B D D D D B B D B D D B +1 D1Utr81 121.199 265.000000 D D D D B D D D B B D D D D B B D B B D D B B D B D D D D B B D B D D B +1 D1Mit14 121.929 158.611143 D D D D B D D D D B D D D D B B D B B D D B B D B D D D D B B D B D D B +1 Inha 38.278 75.392594 B D B B D B B D D D B B B B B B B B D D D B D B B B D B B B B D D D D B +1 Bcl2 0.000 108.539340 D D D D B B B D D D D D D B B D D B D B D D B D D D D B D B B B B D B D +1 Ren1 9.539 135.182850 D D D D B B B D D D D B D D B D D D D B B B B D B D D B D B D B B D D D +2 D2Rat189 0.000 15.682037 B B D B D D D B D D D B B D B B B B B D D B B B B D D D D B B D D D B D +2 D2Rat124 2.439 25.000000 B B B B D D D B D D D B B D D B B B B D D B B B B D D D D B B B D D B D +2 D2Rat11 13.597 34.471644 D D B D D D D D D D D B B B D B D B B D B D B B B D D D B B B B D D B D +2 D2Rat201 18.187 49.619880 B D B B D D D D D D D B D B B B D B D D B D B B B D D D B B B B D D B D +2 D2Rat320 20.627 62.258026 B D B B D B D D D D D B D B B B D D D D B D B B B D D D B B D B D D B D +2 D2Mit6 24.076 74.609905 B D B B B B D D B D D B D B B B D D D D B D B B D D D D B B D B B D B D +2 D2Rat95 26.516 83.348259 B D B B B D D D B D D B D B B B D D D D B D B B D D D B B D D B B D B D +2 D2Rat24 28.955 100.673233 B D B B B D B D B B D B D B B B D D D D B D B B B D D B B D D B B D B D +2 Cpb 31.395 105.358297 B B B D B D B D D B D B D B B B D D D D B D B B B D D B B D D B B D B D +2 D2Mit18 32.125 108.104577 B B B D B D B D D B D B D B B B D B D D B D B B B D D B B D D B B D B D +2 D2CebrP1104s1 36.715 115.000000 B B B B B D D D B B B B D B B B D D D D B D B B B D D B B D D B B D B D +2 D2Utr81 41.305 124.000000 B B B B B B D D B D D B D B B B D D D D B D B B D D D B B B D B B D B D +2 D2Utr11 42.844 126.000000 B B B B D B D D B D D B D B B B D D D D B D B B D D D D B B D B B D B D +2 D2Ucsf2 44.383 127.000000 B B B B D B D D D D D D D B B B D D D D B D B B D D D D B B D B B D B D +2 D2Utr101 45.113 128.000000 B B B B D B D D D D D D D B B B D D D D B D B B B D D D B B D B B D B D +2 D2Mit4 46.651 129.072174 B B B B D B D D D D D D D B B B D D D D B D B B B D D D B B B B D D B D +2 D2Rat147 60.248 138.550942 B D B D B D B D D D D B D B B B D D B D B D B B B D D D B D B D D D D D +2 D2Rat221 61.786 145.704919 D D B D B D B D D D D B D B B B D D B D B D B B B D D B B D B D D D D D +2 D2Utr21 63.325 152.000000 D B B D B D B D D D D B D B D B D D B D B D B B B D D B B D B D D D D D +2 D2Rat152 66.775 159.295583 D B B D B B B D D D D D D B D B D D B D B B B B B B D B B D B D D D D D +2 D2CebrP476s2 70.224 164.000000 B B B D B B B D D D B D D B D B D B B D B B B D B B D B B D B D D D D D +2 D2Cebr11s2 70.954 167.000000 B B B D B B B D B D B D D B D B D B B D B B B D B B D B B D B D D D D D +2 D2Utr91 71.684 170.000000 B B B D B B B D B D B D D B D B D B B D D B B D B B D B B D B D D D D D +2 D2Utr111 72.414 172.000000 B B B D B B B D D D B D D B D B D B B D D B B D B B D B B D B D D D D D +2 Fgg 73.144 174.677432 B B D D B B B D D D B D D B D B D B B D D B B D B B D B B D B D D D D D +2 D2Cebr104s1 74.682 178.000000 B B D D B B B D D D B D D B D B D B B D D B B D B B D B D B B D D D D D +2 P9ka 76.221 182.835175 B B D D B D B D D D D D D B D B D B B D D B B D B B D B D B B D D D D D +2 R802 76.951 186.000000 B B D D B D B D D D D D D B B B D B B D D B B D B B D B D B B D D D D D +2 Atp1a1 79.390 196.620504 B B D D D B B D D B D D D B B B D B B D D B B D B B D B D B B D D D D D +2 D2Cebr10s6 80.120 197.000000 B B D D D B B D D B D D D B B D D B B D D B B D B B D B D B B D D D D D +2 D2Mit14 80.850 200.499242 B B D D D B B D D B D D D B D D D B B D D B B D B B D B D B B D D D D D +2 D2Rat236 81.580 203.998484 B B B D D B B D D B D D D B D D D B B D D B B D B B D B D B B D D D D D +2 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B B D B D B B +3 D3Rat183 28.965 48.932899 D D D B D D B D B D D D D D D D B D B B B B B D B D B D B B B D D D B B +3 D3Rat180 38.081 58.660994 D D D B D B B D B D D D B B D D B B B B B B B D D B B D D D B D D D B B +3 D3Rat35 38.811 68.184508 D D D B D B B D B D D D B B D D B B B B B B B D D B B D D D B D B D B B +3 D3Utr41 40.350 77.000000 D D D B D B B D B B D D B B D D B B B B B B B D D B B D D D B B B D B B +3 D3Rat173 41.888 86.659061 D D D B D B B B B B D B B B D D B B B B B B B D D B B D D D B B B D B B +3 D3Cebr2s4 42.618 87.000000 D D D B D B B B B B D B B D D D B B B B B B B D D B B D D D B B B D B B +3 Cat 44.157 88.550504 D D D B D B B B B B D B B D D D B B B D B B B D D B B D D D B B D D B B +3 D3Mit16 45.695 110.707082 D D D B D B B B B B D B B D D D B B B D B B B D D B B D D B B B B D B B +3 D3Mit15 47.234 132.878067 D D D B D B B B B B D B B D D D B B B B B B B D D B B B D B B B B D B B +3 D3Mit6 47.964 138.231338 D D D B D B B B B B D B B D D D B B B B B B B D D D B B D B B B B D B B +3 D3Mit17 48.694 143.584610 D D D B D B B B B B B B B D D D B B B B B B B D D D B B D B B B B D B B +3 D3Rat166 50.232 106.000000 D D D B D B B B B B B D B D D D B B B B B B B D D D B B D B B B D D B B +3 D3Rat20 51.771 110.000000 D D D B D B B B B B B D B D D D B B B D D B B D D D B B D B B B D D B B +3 D3Utr61 54.040 113.000000 D D B B D B B B D D B D B D D D B B B D D B B D D D B B D B B B D D B B +3 D3Mit13 56.479 116.170846 D D B B B B B B D D B D D D D D B B B D D B B D D B B B D B B B D D B B +3 D3Rat159 58.919 119.342992 D D B B B B B B D D B D D D D D B B B D D B B D D B B D D D D B D D B B +3 D3Rat157 61.358 123.727776 B D D B B B B B D D D D D D D D B B B D D B B D D B B D D D D B D D B B +3 D3Mit4 64.808 41.501273 B D B B B B B B D D D D D D D D B D B D D B B D D B B D D D D B D D D D +3 D3Mit3 65.538 39.238626 B D B B B B B B D D D D D D D D B D B B D B B D D B B D D D D B D D D D +3 D3Rat6 67.977 147.896477 B D D B B B B D D D D D D D B D B D B B D B B D D B B D D D D B D D D D +3 D3Cebr45s8 71.427 149.000000 B D D B D B B D D D B D D D B D B D B B D B B D B B B D D D D B D D D B +3 D3Cebr80s1 72.965 164.000000 B B D B D B B D D D B D D D B B B D B B D B B D B B B D D D D B D D D B +3 D3Rat143 75.405 164.500000 B D D B D B B B D D B D D D B B B D B B D B B D B D B D D D D B D D D B +3 D3Rat132 76.046 164.970696 B D D B D D B B D D B D B D B B B D B B D B B D B D B D D B D B D D D D +3 D3Rat1 82.787 169.922504 B B D B D D B B D B B D B D B B D D B B D B B D B D B D D B D B D D D D +4 D4Rat4 0.730 3.237343 D D B D D B D D D B B B D D B B D D D B D B D B B D D D D D B D B D D D +4 D4Rat1 1.460 6.690730 D D B D D B D D D B B B D D B B D D D B D B B B B D D D D D B D B D D D +4 D4Rat7 2.998 10.723442 D D B D D B D D D B B B D D B B D D D B D B B D D D D D D D B D B D D D +4 D4Utr21 5.267 15.000000 D D B D D B D D D D B B D B B B D D D B D B B B D D D D D D B D B D D D +4 D4Ucsf1 7.706 19.000000 D D B D D B D D D D B B D B B D D D B B D B B 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