diff options
| author | Zachary Sloan | 2013-06-20 22:20:23 +0000 |
|---|---|---|
| committer | Zachary Sloan | 2013-06-20 22:20:23 +0000 |
| commit | 4ffee373494170e708678039dca132f1bd729ab1 (patch) | |
| tree | a9d6054380f5a9d612a4d1d88889f68ea4923a75 /web/genotypes/AKXD.geno | |
| parent | 939058c4a3b668037974f2876b072c4be008da26 (diff) | |
| parent | 52ac4b6e1c014801080cbbcad53df868058d2657 (diff) | |
| download | genenetwork2-4ffee373494170e708678039dca132f1bd729ab1.tar.gz | |
Merge branch 'flask'
Diffstat (limited to 'web/genotypes/AKXD.geno')
| -rwxr-xr-x | web/genotypes/AKXD.geno | 1367 |
1 files changed, 1367 insertions, 0 deletions
diff --git a/web/genotypes/AKXD.geno b/web/genotypes/AKXD.geno new file mode 100755 index 00000000..623e4ed1 --- /dev/null +++ b/web/genotypes/AKXD.geno @@ -0,0 +1,1367 @@ +#this is AKXD genotype file, it should be tab-delimited
+#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive)
+#please save as Unix format text file.
+#comment line always start with a '#'
+#type riset or intercross
+@type:riset
+@name:AKXD
+#abbreviation of maternal or paternal parents
+@mat:A
+@pat:D
+#heterozygous , optional, default is "H"
+@het:H
+#Unknown , optional, default is "U"
+@unk:U
+Chr Locus cM Mb AKXD1 AKXD2 AKXD3 AKXD6 AKXD7 AKXD8 AKXD9 AKXD10 AKXD11 AKXD12 AKXD13 AKXD14 AKXD15 AKXD16 AKXD18 AKXD20 AKXD21 AKXD22 AKXD23 AKXD24 AKXD25 AKXD26 AKXD27 AKXD28
+1 rs6336442 0 3.570714 D D D D D D D D D A A D D D D A D D D A A A D A
+1 rs13475709 0 6.646043 D D D D D D D D D A A D D D D A D D D A A A D A
+1 rs6298633 1.124 6.820241 D D D D D D D D D A A D D D D D D D D A A A D A
+1 rs3698285 1.124 10.019111 D D D D D D D D D A A D D D D D D D D A A A D A
+1 rs3678510 2.247 10.67149 D D D D D D D D D A A D D D D D D D A A A A D A
+1 rs13475726 2.247 12.084014 D D D D D D D D D A A D D D D D D D A A A A D A
+1 rs13475728 3.371 12.71128 D D D D D D D D D A A A D D D D D D A A A A D A
+1 rs13475731 3.371 13.42609 D D D D D D D D D A A A D D D D D D A A A A D A
+1 rs13475734 4.494 14.667236 D D D D D D D D D A A A D D D D D A A A A A D A
+1 rs3723784 4.494 14.668676 D D D D D D D D D A A A D D D D D A A A A A D A
+1 rs6291839 5.618 14.787217 D D D D D D D D D A A D D D D D D A A A A A D A
+1 rs3088964 5.618 15.196882 D D D D D D D D D A A D D D D D D A A A A A D A
+1 rs3671256 6.742 16.268721 D D D D D D D D D A A D D D D D A A A A A A D A
+1 rs13475744 6.742 17.146316 D D D D D D D D D A A D D D D D A A A A A A D A
+1 CEL-1_18376533 7.865 18.158832 D D D D D D D D D A A A D D D D A A A A A A D A
+1 rs3656562 8.989 18.474671 D D D D D D A D D A A A D D D D A A A A A A D A
+1 rs13475750 10.112 19.463809 D D D D D D A D A A A A D D D D A A A A A A D A
+1 rs3687041 10.112 20.419988 D D D D D D A D A A A A D D D D A A A A A A D A
+1 rs6316488 11.236 23.151887 D D D D D D A D A A A A D D A D A A A A A A D A
+1 rs13475771 11.236 25.489364 D D D D D D A D A A A A D D A D A A A A A A D A
+1 mCV25266528 12.36 27.850773 D D D D D D A D A A A A D D A A A A A A A A D A
+1 CEL-1_32373639 12.36 32.142824 D D D D D D A D A A A A D D A A A A A A A A D A
+1 rs3655881 14.799 32.509342 D D D D A D A D A A A A D D A A A A A A D A D A
+1 rs3664658 14.799 33.236534 D D D D A D A D A A A A D D A A A A A A D A D A
+1 rs13475800 17.239 34.021845 D D D D A D A D A A A D D D A A D A A A D A D A
+1 rs4222275 17.239 37.467257 D D D D A D A D A A A D D D A A D A A A D A D A
+1 mCV25004024 21.241 38.451548 D D D D D A A D A A A D D D A A D A A A A A D A
+1 rs6164278 21.241 38.492881 D D D D D A A D A A A D D D A A D A A A A A D A
+1 rs6387241 22.364 39.355824 D D D D D D A D A A A D D D A A D A A A A A D A
+1 rs3708475 22.364 40.744993 D D D D D D A D A A A D D D A A D A A A A A D A
+1 rs3696088 23.488 40.885691 D D D D D D A D A A A D D D A A D A A A D A D A
+1 rs3663706 23.488 42.070332 D D D D D D A D A A A D D D A A D A A A D A D A
+1 rs13475834 25.927 42.52099 A D D D D D A D A A A D D D A A D A A D D A D A
+1 rs3675140 25.927 42.549842 A D D D D D A D A A A D D D A A D A A D D A D A
+1 gnf01.040.172 27.051 42.890112 A D D D D D A A A A A D D D A A D A A D D A D A
+1 rs6245700 27.051 59.176496 A D D D D D A A A A A D D D A A D A A D D A D A
+1 D1Mit279 28.227 59.334633 A D D D D H A A A A A D D D A A D A A D A A D A
+1 rs13475883 29.351 59.435974 A D D D D A A A A A A D D D A A D A A D A A D A
+1 rs13475887 29.351 61.44379 A D D D D A A A A A A D D D A A D A A D A A D A
+1 rs3716105 30.475 61.597451 A D D D D A A A A A A D D D A A D A A D A A A A
+1 rs3163007 31.598 64.087682 A D D D D A A A A A A D D D A D D A A D A A A A
+1 Cryg 31.598 65.702298 A D D D D A A A A A A D D D A D D A A D A A A A
+1 rs13475906 32.722 67.618355 A D D D D A A A A A A D D D A D D A A D D A A A
+1 D1Mit178 32.722 68.769662 A D D D D A A A A A A D D D A D D A A D D A A A
+1 rs6323094 33.846 70.774787 A D D D D A A A A A A D D A A D D A A D D A A A
+1 rs13475919 33.846 73.020554 A D D D D A A A A A A D D A A D D A A D D A A A
+1 mCV23057534 34.969 73.645269 A D D D D A A A A A A D A A A D D A A D D A A A
+1 rs6182343 34.969 78.312524 A D D D D A A A A A A D A A A D D A A D D A A A
+1 rs13475939 36.093 78.684288 A D D D A A A A A A A D A A A D D A A D D A A A
+1 rs13475946 36.093 80.719279 A D D D A A A A A A A D A A A D D A A D D A A A
+1 rs6288514 40.095 83.52505 D A D D D A A A A A A D A A A D D A A D D A A A
+1 rs8253487 40.095 87.559582 D A D D D A A A A A A D A A A D D A A D D A A A
+1 rs3678377 41.218 87.687978 D A D D D A A A A A A D A A A D D A D D D A A A
+1 rs6234856 41.218 89.812968 D A D D D A A A A A A D A A A D D A D D D A A A
+1 D1Mit440 42.342 90.682602 D A A D D A A A A A A D A A A D D A D D D A A A
+1 rs6226012 42.342 91.918243 D A A D D A A A A A A D A A A D D A D D D A A A
+1 rs6255203 43.466 92.306151 D A A D D A A A A A A D D A A D D A D D D A A A
+1 rs13475979 43.466 93.218893 D A A D D A A A A A A D D A A D D A D D D A A A
+1 rs13475981 44.589 93.932464 D D A D D A A A A A A D D A A D D A D D D A A A
+1 mCV24380249 44.589 94.034806 D D A D D A A A A A A D D A A D D A D D D A A A
+1 rs13475982 45.713 94.229305 D D A D D A A A A A A D D D A D D A D D D A A A
+1 rs13475985 45.713 94.845961 D D A D D A A A A A A D D D A D D A D D D A A A
+1 rs13475989 46.836 95.906062 D D A D D A A A A A A D A D A D D A D D D A A A
+1 rs13475990 46.836 96.160362 D D A D D A A A A A A D A D A D D A D D D A A A
+1 rs13475991 47.96 96.419818 A D A D D A A A A A A D A D A D D A D D D A A A
+1 rs3685665 47.96 110.723532 A D A D D A A A A A A D A D A D D A D D D A A A
+1 rs3725409 49.084 118.310024 A D A D D A A A A D A D A D A D D A D D D A A A
+1 rs3727162 49.084 118.83078 A D A D D A A A A D A D A D A D D A D D D A A A
+1 rs6259837 50.207 119.163927 A D A D D A A A A D A D A D A D D A D A D A A A
+1 rs3695581 50.207 120.637061 A D A D D A A A A D A D A D A D D A D A D A A A
+1 D1Mit217 51.331 122.498354 A D A D D H A A A D A D A D A D D A D A D A A A
+1 gnf01.123.653 52.507 125.888671 A D A D D D A A A D A D A D A D D A D A D A A D
+1 gnf01.124.355 52.507 126.583366 A D A D D D A A A D A D A D A D D A D A D A A D
+1 gnf01.126.387 56.509 128.62571 A D A D D A A A A D A A A D A A D A D A D A A D
+1 rs3681022 56.509 134.469785 A D A D D A A A A D A A A D A A D A D A D A A D
+1 rs13476122 58.949 136.766729 A D A D D A A A A D A A A D A D D D D A D A A D
+1 D1Mit103 60.073 137.882255 A D A D D A A A A D A A A D A D A D D A D A A D
+1 rs13476138 60.073 141.417667 A D A D D A A A A D A A A D A D A D D A D A A D
+1 D1Mit100 61.196 145.756703 A D A D D A D A A D A A A D A D A D D A D A A D
+1 rs13476153 61.196 146.127221 A D A D D A D A A D A A A D A D A D D A D A A D
+1 gnf01.148.750 62.32 151.137795 A D A D D A D D A D A A A D A D A D D A D A A D
+1 D1Mit502 62.32 154.748773 A D A D D A D D A D A A A D A D A D D A D A A D
+1 rs6305232 63.443 155.074608 A D A D D A D D A D A A A D D D A D D A D A A D
+1 rs3674280 63.443 155.080474 A D A D D A D D A D A A A D D D A D D A D A A D
+1 rs6362681 64.567 155.319103 A D A D D A D D A D A A A D D D A D A A D A A D
+1 rs8242897 64.567 155.750988 A D A D D A D D A D A A A D D D A D A A D A A D
+1 rs13476187 65.691 156.052563 A D A D D A D D A D A A A D D D A D A A D A A A
+1 rs6181202 65.691 156.456242 A D A D D A D D A D A A A D D D A D A A D A A A
+1 rs3719034 68.13 159.088134 A D A D D A A D A D A A A D D D A A A A D A A A
+1 Serpinc1 69.254 163.013454 A D A D D A A D A D A A A D A D A A A A D A A A
+1 rs3695661 68.13 164.935094 A D A D D A A D A D A A A D D D A A A A D A A A
+1 rs4222778 69.254 167.411044 A D A D D A A D A D A A A D A D A A A A D A A A
+1 UT_1_169.37506 70.377 167.705234 A D A D A A A D A D A A A D A D A A A A D A A A
+1 rs13476219 70.377 168.178247 A D A D A A A D A D A A A D A D A A A A D A A A
+1 UT_1_169.988189 71.501 168.323142 A D A D A A A D A D A A A D A D A D A A D A A A
+1 gnf01.167.396 71.501 169.907833 A D A D A A A D A D A A A D A D A D A A D A A A
+1 rs3714825 72.624 170.146765 A D A D A A A D A D A D A D A D A D A A D A A A
+1 Fcgr3 78.514 171.233456 A D A D A A A D A D A D A D A A A D A D D A D D
+1 rs13476229 72.624 171.235304 A D A D A A A D A D A D A D A D A D A A D A A A
+1 rs8242852 78.514 172.98082 A D A D A A A D A D A D A D A A A D A D D A D D
+1 rs8258245 79.637 173.155535 A D A D A A A D A D A A A D A A A D A D D A D D
+1 Apoa2 79.637 173.156334 A D A D A A A D A D A A A D A A A D A D D A D D
+1 rs13476241 80.761 174.792334 A D A D A A A A A D A A A D A A A D A D D A D D
+1 rs6213386 80.761 177.262371 A D A D A A A A A D A A A D A A A D A D D A D D
+1 rs3723788 83.2 178.114836 A D A D A A A A A D A D A D A A A A A D D A D D
+1 mCV23522667 83.2 181.795274 A D A D A A A A A D A D A D A A A A A D D A D D
+1 D1Mit426 84.324 182.341751 A D A D A A A A A D A D A D A A A A A D A A D D
+1 rs13476272 84.324 183.347399 A D A D A A A A A D A D A D A A A A A D A A D D
+1 rs3722233 85.448 184.569533 A D A D A A A A A D A A A D A A A A A D A A D D
+1 rs13476279 86.571 185.630592 A D A D A A A A A D A A D D A A A A A D A A D D
+1 rs6214478 87.695 186.110494 A D A D A A A A D D A A D D A A A A A D A A D D
+1 mCV24555989 88.818 186.627144 A D A A A A A A D D A A D D A A A A A D A A D D
+1 D1Mit221 88.818 187.046265 A D A A A A A A D D A A D D A A A A A D A A D D
+1 rs13476286 89.942 187.711001 A D A A A A A A D D A A D D A A A A A D D A D D
+1 rs13476290 89.942 188.966258 A D A A A A A A D D A A D D A A A A A D D A D D
+1 rs13476292 91.065 189.743207 A D A D A A A A D D A A D D A A A A A D D A D D
+1 rs3680295 91.065 190.724767 A D A D A A A A D D A A D D A A A A A D D A D D
+1 CEL-1_188885303 92.189 190.852996 A D A D A A A A D D A D D D A A A A A D D A D D
+1 rs13476297 92.189 191.177932 A D A D A A A A D D A D D D A A A A A D D A D D
+1 rs13476302 93.313 192.645261 A D A D A A A A A D A D D D A A A A A D D A D D
+1 gnf01.195.387 93.313 193.28021 A D A D A A A A A D A D D D A A A A A D D A D D
+1 rs13476308 94.436 193.610591 A D A D A A A A A D A D D A A A A A A D D A D D
+1 rs3022878 94.436 195.04813 A D A D A A A A A D A D D A A A A A A D D A D D
+1 rs13476311 95.56 195.605038 A D A D A A A A A D A D D D A A A A A D D A D D
+1 mCV24145570 95.56 197.134686 A D A D A A A A A D A D D D A A A A A D D A D D
+2 rs13476318 0 3.046102 A A A A A A D A D D D D A A D A A D D D D A D A
+2 gnf02.001.197 1.124 4.169708 A A A A A A D A D D D D D A D A A D D D D A D A
+2 rs13476330 3.563 5.767412 A A A A A A A A D D D D A A D A A D D D D A D A
+2 rs13476334 3.563 7.296983 A A A A A A A A D D D D A A D A A D D D D A D A
+2 gnf02.006.767 6.003 9.751287 A D A D A A A A D D D D A A D A A D D D D A D A
+2 rs6159599 8.442 10.367311 A D A D A A A A D D D D A A D A A D D A A A D A
+2 rs6240512 8.442 10.900063 A D A D A A A A D D D D A A D A A D D A A A D A
+2 rs13476350 10.882 11.707491 A D A D A A A A D D D D D A D A A D D D A A D A
+2 UT_2_12.071809 10.882 11.990068 A D A D A A A A D D D D D A D A A D D D A A D A
+2 mCV25433152 19.097 17.833384 A A A A A A A A D A D D D A A A A A D D A A D A
+2 D2Mit238 27.891 33.976569 H A A D A A A A A A D A D A A A D A D A A A D A
+2 rs13476429 29.068 35.252641 D A D D A A A A A A D A D A A A D A D A A A D A
+2 rs13476501 44.073 52.672634 A A A D D D A A A A D A D A D A D D D A D A D A
+2 rs3660779 48.075 60.486382 A A A D A D A D A A D A D A D A D A D A D A D A
+2 rs3688501 48.075 61.778204 A A A D A D A D A A D A D A D A D A D A D A D A
+2 rs6318340 49.199 62.000421 A A A D D D A D A A D A D A D A D A D A D A D A
+2 rs3022886 49.199 62.483389 A A A D D D A D A A D A D A D A D A D A D A D A
+2 rs13476538 50.322 62.717693 A A A D D D A D D A D A D A D A D A D A D A D A
+2 rs3664317 50.322 63.687212 A A A D D D A D D A D A D A D A D A D A D A D A
+2 rs6314726 51.446 63.950898 A A D D D D A D D A D A D A D A D A D A D A D A
+2 rs13476563 51.446 69.970051 A A D D D D A D D A D A D A D A D A D A D A D A
+2 D2Mit92 52.57 71.417709 A A D D D D A D D A D A D A D A D A D A D A A A
+2 rs3664661 52.57 71.436619 A A D D D D A D D A D A D A D A D A D A D A A A
+2 rs6295014 53.693 71.612395 A D D D D D A D D A D A D A D A D A D A D A A A
+2 rs13476581 53.693 75.021938 A D D D D D A D D A D A D A D A D A D A D A A A
+2 rs3683059 54.817 75.34357 A D D D D D A D D A D A D D D A D A D A D A A A
+2 rs3669217 54.817 76.308799 A D D D D D A D D A D A D D D A D A D A D A A A
+2 rs6281904 55.94 76.87576 A D D D D D A D D A D A D D D A D A D A D A A D
+2 gnf02.076.311 55.94 77.493058 A D D D D D A D D A D A D D D A D A D A D A A D
+2 rs13476632 58.38 90.749355 D D D D D D A D D A D A D D D A D A D A D A A A
+2 CEL-2_97928675 58.38 97.874847 D D D D D D A D D A D A D D D A D A D A D A A A
+2 rs13476670 59.503 101.983797 D D D D D D A D D A D A D D D A D A D A D D A A
+2 rs3726330 59.503 103.260252 D D D D D D A D D A D A D D D A D A D A D D A A
+2 rs6242654 61.943 107.081146 D D D A D D A D D A D A D A D A D A D A D D A A
+2 mCV22528760 61.943 116.341847 D D D A D D A D D A D A D A D A D A D A D D A A
+2 rs13476723 63.067 117.118531 D D D A D D A D D A D A D A D A D A D A D A A A
+2 rs13476756 63.067 124.821217 D D D A D D A D D A D A D A D A D A D A D A A A
+2 rs6401493 64.19 125.123508 D D D A D A A D D A D A D A D A D A D A D A A A
+2 rs13469412 64.19 128.959488 D D D A D A A D D A D A D A D A D A D A D A A A
+2 gnf02.127.785 65.314 129.383336 D D D A D A A D A A D A D A D A D A D A D A A A
+2 rs8264884 65.314 130.881867 D D D A D A A D A A D A D A D A D A D A D A A A
+2 rs3690254 66.437 131.352411 D D D A A A A D A A D A D A D A D A D A D A A A
+2 rs13476793 66.437 136.253016 D D D A A A A D A A D A D A D A D A D A D A A A
+2 rs13476805 67.561 139.549795 D D D A A A A D A A D A D A D D D A D A D A A A
+2 rs6397890 67.561 141.778075 D D D A A A A D A A D A D A D D D A D A D A A A
+2 rs6360457 70 142.006269 D A D A A A A D A A D A D A D D D A D D D A A A
+2 rs3655895 70 144.359112 D A D A A A A D A A D A D A D D D A D D D A A A
+2 rs3696870 78.216 147.477698 D D D A D A A D A A D A D D D D D A D A D D A A
+2 rs3676033 78.216 149.271014 D D D A D A A D A A D A D D D D D A D A D D A A
+2 rs6206791 79.339 149.491611 D A D A D A A D A A D A D D D D D A D A D D A A
+2 UT_2_155.319647 79.339 154.520255 D A D A D A A D A A D A D D D D D A D A D D A A
+2 rs13476868 83.341 158.163344 D A D A D A A A A D D A D D D D D A D A A D A A
+2 UT_2_159.241221 83.341 158.44135 D A D A D A A A A D D A D D D D D A D A A D A A
+2 gnf02.161.674 84.465 158.566514 D A D A D A A A A D D A D D D D D D D A A D A A
+2 rs3693259 84.465 160.792942 D A D A D A A A A D D A D D D D D D D A A D A A
+2 rs3664408 85.588 161.205957 D A D A D A A A A D D A D D D D A D D A A D A A
+2 rs13476881 85.588 161.896943 D A D A D A A A A D D A D D D D A D D A A D A A
+2 D2Mit263 86.712 162.180764 D A D A D A A A A D D A D D D D A D D A D D A A
+2 rs3671849 86.712 162.978274 D A D A D A A A A D D A D D D D A D D A D D A A
+2 rs13476891 89.152 164.559755 D A D A D A A A D D D A D D D D D D D A D D A A
+2 rs13476892 89.152 165.221782 D A D A D A A A D D D A D D D D D D D A D D A A
+2 D2Mit145 91.591 166.220486 D A D A D A A A D D D A D D D D D A D D D D A A
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