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authorZachary Sloan2013-06-20 22:20:23 +0000
committerZachary Sloan2013-06-20 22:20:23 +0000
commit4ffee373494170e708678039dca132f1bd729ab1 (patch)
treea9d6054380f5a9d612a4d1d88889f68ea4923a75 /web/genotypes/AKXD.geno.update.recal
parent939058c4a3b668037974f2876b072c4be008da26 (diff)
parent52ac4b6e1c014801080cbbcad53df868058d2657 (diff)
downloadgenenetwork2-4ffee373494170e708678039dca132f1bd729ab1.tar.gz
Merge branch 'flask'
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1 files changed, 1367 insertions, 0 deletions
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+#this is AKXD genotype file, it should be tab-delimited
+#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive)
+#please save as Unix format text file.
+#comment line always start with a '#'
+#type riset or intercross
+@type:riset
+@name:AKXD
+#abbreviation of maternal or paternal parents
+@mat:A
+@pat:D
+#heterozygous , optional, default is "H"
+@het:H
+#Unknown , optional, default is "U"
+@unk:U
+Chr Locus cM Mb AKXD1 AKXD2 AKXD3 AKXD6 AKXD7 AKXD8 AKXD9 AKXD10 AKXD11 AKXD12 AKXD13 AKXD14 AKXD15 AKXD16 AKXD18 AKXD20 AKXD21 AKXD22 AKXD23 AKXD24 AKXD25 AKXD26 AKXD27 AKXD28
+1 rs6336442 0.000 3.570714 D D D D D D D D D A A D D D D A D D D A A A D A
+1 rs13475709 0.000 6.646043 D D D D D D D D D A A D D D D A D D D A A A D A
+1 rs6298633 1.124 6.820241 D D D D D D D D D A A D D D D D D D D A A A D A
+1 rs3698285 1.124 10.014244 D D D D D D D D D A A D D D D D D D D A A A D A
+1 rs3678510 2.247 10.666623 D D D D D D D D D A A D D D D D D D A A A A D A
+1 rs13475726 2.247 12.079147 D D D D D D D D D A A D D D D D D D A A A A D A
+1 rs13475728 3.371 12.706413 D D D D D D D D D A A A D D D D D D A A A A D A
+1 rs13475731 3.371 13.421223 D D D D D D D D D A A A D D D D D D A A A A D A
+1 rs13475734 4.494 14.662369 D D D D D D D D D A A A D D D D D A A A A A D A
+1 rs3723784 4.494 14.663809 D D D D D D D D D A A A D D D D D A A A A A D A
+1 rs6291839 5.618 14.782350 D D D D D D D D D A A D D D D D D A A A A A D A
+1 rs3088964 5.618 15.192015 D D D D D D D D D A A D D D D D D A A A A A D A
+1 rs3671256 6.742 16.263854 D D D D D D D D D A A D D D D D A A A A A A D A
+1 rs13475744 6.742 17.141449 D D D D D D D D D A A D D D D D A A A A A A D A
+1 CEL-1_18376533 7.865 18.153965 D D D D D D D D D A A A D D D D A A A A A A D A
+1 rs3656562 8.989 18.469804 D D D D D D A D D A A A D D D D A A A A A A D A
+1 rs13475750 10.112 19.458942 D D D D D D A D A A A A D D D D A A A A A A D A
+1 rs3687041 10.112 20.415058 D D D D D D A D A A A A D D D D A A A A A A D A
+1 rs6316488 11.236 23.099323 D D D D D D A D A A A A D D A D A A A A A A D A
+1 rs13475771 11.236 25.377065 D D D D D D A D A A A A D D A D A A A A A A D A
+1 mCV25266528 12.360 27.738474 D D D D D D A D A A A A D D A A A A A A A A D A
+1 CEL-1_32373639 12.360 32.030525 D D D D D D A D A A A A D D A A A A A A A A D A
+1 rs3655881 14.799 32.397043 D D D D A D A D A A A A D D A A A A A A D A D A
+1 rs3664658 14.799 33.124235 D D D D A D A D A A A A D D A A A A A A D A D A
+1 rs13475800 17.239 33.909546 D D D D A D A D A A A D D D A A D A A A D A D A
+1 rs4222275 17.239 37.354958 D D D D A D A D A A A D D D A A D A A A D A D A
+1 mCV25004024 21.241 38.339249 D D D D D A A D A A A D D D A A D A A A A A D A
+1 rs6164278 21.241 38.380582 D D D D D A A D A A A D D D A A D A A A A A D A
+1 rs6387241 22.364 39.243525 D D D D D D A D A A A D D D A A D A A A A A D A
+1 rs3708475 22.364 40.632694 D D D D D D A D A A A D D D A A D A A A A A D A
+1 rs3696088 23.488 40.773392 D D D D D D A D A A A D D D A A D A A A D A D A
+1 rs3663706 23.488 41.958033 D D D D D D A D A A A D D D A A D A A A D A D A
+1 rs13475834 25.927 42.408691 A D D D D D A D A A A D D D A A D A A D D A D A
+1 rs3675140 25.927 42.437543 A D D D D D A D A A A D D D A A D A A D D A D A
+1 gnf01.040.172 27.051 42.777813 A D D D D D A A A A A D D D A A D A A D D A D A
+1 rs6245700 27.051 59.064198 A D D D D D A A A A A D D D A A D A A D D A D A
+1 D1Mit279 28.227 59.222335 A D D D D H A A A A A D D D A A D A A D A A D A
+1 rs13475883 29.351 59.323676 A D D D D A A A A A A D D D A A D A A D A A D A
+1 rs13475887 29.351 61.331492 A D D D D A A A A A A D D D A A D A A D A A D A
+1 rs3716105 30.475 61.485153 A D D D D A A A A A A D D D A A D A A D A A A A
+1 rs3163007 31.598 63.975384 A D D D D A A A A A A D D D A D D A A D A A A A
+1 Cryg 31.598 65.590000 A D D D D A A A A A A D D D A D D A A D A A A A
+1 rs13475906 32.722 67.504989 A D D D D A A A A A A D D D A D D A A D D A A A
+1 D1Mit178 32.722 68.656296 A D D D D A A A A A A D D D A D D A A D D A A A
+1 rs6323094 33.846 70.661421 A D D D D A A A A A A D D A A D D A A D D A A A
+1 rs13475919 33.846 72.907187 A D D D D A A A A A A D D A A D D A A D D A A A
+1 mCV23057534 34.969 73.531902 A D D D D A A A A A A D A A A D D A A D D A A A
+1 rs6182343 34.969 78.199096 A D D D D A A A A A A D A A A D D A A D D A A A
+1 rs13475939 36.093 78.566737 A D D D A A A A A A A D A A A D D A A D D A A A
+1 rs13475946 36.093 80.601728 A D D D A A A A A A A D A A A D D A A D D A A A
+1 rs6288514 40.095 83.407499 D A D D D A A A A A A D A A A D D A A D D A A A
+1 rs8253487 40.095 87.494178 D A D D D A A A A A A D A A A D D A A D D A A A
+1 rs3678377 41.218 87.622574 D A D D D A A A A A A D A A A D D A D D D A A A
+1 rs6234856 41.218 89.747564 D A D D D A A A A A A D A A A D D A D D D A A A
+1 D1Mit440 42.342 90.617198 D A A D D A A A A A A D A A A D D A D D D A A A
+1 rs6226012 42.342 91.852839 D A A D D A A A A A A D A A A D D A D D D A A A
+1 rs6255203 43.466 92.240747 D A A D D A A A A A A D D A A D D A D D D A A A
+1 rs13475979 43.466 93.152722 D A A D D A A A A A A D D A A D D A D D D A A A
+1 rs13475981 44.589 93.866293 D D A D D A A A A A A D D A A D D A D D D A A A
+1 mCV24380249 44.589 93.968635 D D A D D A A A A A A D D A A D D A D D D A A A
+1 rs13475982 45.713 94.163134 D D A D D A A A A A A D D D A D D A D D D A A A
+1 rs13475985 45.713 94.779790 D D A D D A A A A A A D D D A D D A D D D A A A
+1 rs13475989 46.836 95.839891 D D A D D A A A A A A D A D A D D A D D D A A A
+1 rs13475990 46.836 96.094191 D D A D D A A A A A A D A D A D D A D D D A A A
+1 rs13475991 47.960 96.353647 A D A D D A A A A A A D A D A D D A D D D A A A
+1 rs3685665 47.960 110.654502 A D A D D A A A A A A D A D A D D A D D D A A A
+1 rs3725409 49.084 118.240994 A D A D D A A A A D A D A D A D D A D D D A A A
+1 rs3727162 49.084 118.761750 A D A D D A A A A D A D A D A D D A D D D A A A
+1 rs6259837 50.207 119.094897 A D A D D A A A A D A D A D A D D A D A D A A A
+1 rs3695581 50.207 120.568030 A D A D D A A A A D A D A D A D D A D A D A A A
+1 D1Mit217 51.331 122.429323 A D A D D H A A A D A D A D A D D A D A D A A A
+1 gnf01.123.653 52.507 125.819640 A D A D D D A A A D A D A D A D D A D A D A A D
+1 gnf01.124.355 52.507 126.514335 A D A D D D A A A D A D A D A D D A D A D A A D
+1 gnf01.126.387 56.509 128.556679 A D A D D A A A A D A A A D A A D A D A D A A D
+1 rs3681022 56.509 134.400754 A D A D D A A A A D A A A D A A D A D A D A A D
+1 rs13476122 58.949 136.686563 A D A D D A A A A D A A A D A D D D D A D A A D
+1 D1Mit103 60.073 137.802089 A D A D D A A A A D A A A D A D A D D A D A A D
+1 rs13476138 60.073 141.337501 A D A D D A A A A D A A A D A D A D D A D A A D
+1 D1Mit100 61.196 145.671791 A D A D D A D A A D A A A D A D A D D A D A A D
+1 rs13476153 61.196 146.042309 A D A D D A D A A D A A A D A D A D D A D A A D
+1 gnf01.148.750 62.320 151.052883 A D A D D A D D A D A A A D A D A D D A D A A D
+1 D1Mit502 62.320 154.663861 A D A D D A D D A D A A A D A D A D D A D A A D
+1 rs6305232 63.443 154.989696 A D A D D A D D A D A A A D D D A D D A D A A D
+1 rs3674280 63.443 154.995562 A D A D D A D D A D A A A D D D A D D A D A A D
+1 rs6362681 64.567 155.234191 A D A D D A D D A D A A A D D D A D A A D A A D
+1 rs8242897 64.567 155.666076 A D A D D A D D A D A A A D D D A D A A D A A D
+1 rs13476187 65.691 155.967651 A D A D D A D D A D A A A D D D A D A A D A A A
+1 rs6181202 65.691 156.371330 A D A D D A D D A D A A A D D D A D A A D A A A
+1 rs3719034 68.130 158.994680 A D A D D A A D A D A A A D D D A A A A D A A A
+1 rs3695661 68.130 158.994680 A D A D D A A D A D A A A D D D A A A A D A A A
+1 Serpinc1 69.254 162.920000 A D A D D A A D A D A A A D A D A A A A D A A A
+1 rs4222778 69.254 167.317588 A D A D D A A D A D A A A D A D A A A A D A A A
+1 UT_1_169.37506 70.377 167.611778 A D A D A A A D A D A A A D A D A A A A D A A A
+1 rs13476219 70.377 168.084791 A D A D A A A D A D A A A D A D A A A A D A A A
+1 UT_1_169.988189 71.501 168.229686 A D A D A A A D A D A A A D A D A D A A D A A A
+1 gnf01.167.396 71.501 169.814377 A D A D A A A D A D A A A D A D A D A A D A A A
+1 rs3714825 72.624 170.053309 A D A D A A A D A D A D A D A D A D A A D A A A
+1 rs13476229 72.624 171.141848 A D A D A A A D A D A D A D A D A D A A D A A A
+1 rs8242852 78.514 172.887364 A D A D A A A D A D A D A D A A A D A D D A D D
+1 Fcgr3 78.514 172.887364 A D A D A A A D A D A D A D A A A D A D D A D D
+1 rs8258245 79.637 173.062079 A D A D A A A D A D A A A D A A A D A D D A D D
+1 Apoa2 79.637 173.062878 A D A D A A A D A D A A A D A A A D A D D A D D
+1 rs13476241 80.761 174.698878 A D A D A A A A A D A A A D A A A D A D D A D D
+1 rs6213386 80.761 177.168915 A D A D A A A A A D A A A D A A A D A D D A D D
+1 rs3723788 83.200 178.021380 A D A D A A A A A D A D A D A A A A A D D A D D
+1 mCV23522667 83.200 181.701818 A D A D A A A A A D A D A D A A A A A D D A D D
+1 D1Mit426 84.324 182.248295 A D A D A A A A A D A D A D A A A A A D A A D D
+1 rs13476272 84.324 183.253943 A D A D A A A A A D A D A D A A A A A D A A D D
+1 rs3722233 85.448 184.476077 A D A D A A A A A D A A A D A A A A A D A A D D
+1 rs13476279 86.571 185.507969 A D A D A A A A A D A A D D A A A A A D A A D D
+1 rs6214478 87.695 185.987871 A D A D A A A A D D A A D D A A A A A D A A D D
+1 mCV24555989 88.818 186.504053 A D A A A A A A D D A A D D A A A A A D A A D D
+1 D1Mit221 88.818 186.923174 A D A A A A A A D D A A D D A A A A A D A A D D
+1 rs13476286 89.942 187.587910 A D A A A A A A D D A A D D A A A A A D D A D D
+1 rs13476290 89.942 188.843167 A D A A A A A A D D A A D D A A A A A D D A D D
+1 rs13476292 91.065 189.620116 A D A D A A A A D D A A D D A A A A A D D A D D
+1 rs3680295 91.065 190.601676 A D A D A A A A D D A A D D A A A A A D D A D D
+1 CEL-1_188885303 92.189 190.729905 A D A D A A A A D D A D D D A A A A A D D A D D
+1 rs13476297 92.189 191.054841 A D A D A A A A D D A D D D A A A A A D D A D D
+1 rs13476302 93.313 192.521997 A D A D A A A A A D A D D D A A A A A D D A D D
+1 gnf01.195.387 93.313 193.156946 A D A D A A A A A D A D D D A A A A A D D A D D
+1 rs13476308 94.436 193.487327 A D A D A A A A A D A D D A A A A A A D D A D D
+1 rs3022878 94.436 194.922660 A D A D A A A A A D A D D A A A A A A D D A D D
+1 rs13476311 95.560 195.479568 A D A D A A A A A D A D D D A A A A A D D A D D
+1 mCV24145570 95.560 197.009216 A D A D A A A A A D A D D D A A A A A D D A D D
+2 rs13476318 0.000 3.046102 A A A A A A D A D D D D A A D A A D D D D A D A
+2 gnf02.001.197 1.124 4.165934 A A A A A A D A D D D D D A D A A D D D D A D A
+2 rs13476330 3.563 5.763638 A A A A A A A A D D D D A A D A A D D D D A D A
+2 rs13476334 3.563 7.293209 A A A A A A A A D D D D A A D A A D D D D A D A
+2 gnf02.006.767 6.003 9.747513 A D A D A A A A D D D D A A D A A D D D D A D A
+2 rs6159599 8.442 10.363537 A D A D A A A A D D D D A A D A A D D A A A D A
+2 rs6240512 8.442 10.896289 A D A D A A A A D D D D A A D A A D D A A A D A
+2 rs13476350 10.882 11.703717 A D A D A A A A D D D D D A D A A D D D A A D A
+2 UT_2_12.071809 10.882 11.986294 A D A D A A A A D D D D D A D A A D D D A A D A
+2 mCV25433152 19.097 17.829511 A A A A A A A A D A D D D A A A A A D D A A D A
+2 D2Mit238 27.891 33.943058 H A A D A A A A A A D A D A A A D A D A A A D A
+2 rs13476429 29.068 35.219130 D A D D A A A A A A D A D A A A D A D A A A D A
+2 rs13476501 44.073 52.635609 A A A D D D A A A A D A D A D A D D D A D A D A
+2 rs3660779 48.075 60.449164 A A A D A D A D A A D A D A D A D A D A D A D A
+2 rs3688501 48.075 61.740986 A A A D A D A D A A D A D A D A D A D A D A D A
+2 rs6318340 49.199 61.963203 A A A D D D A D A A D A D A D A D A D A D A D A
+2 rs3022886 49.199 62.446171 A A A D D D A D A A D A D A D A D A D A D A D A
+2 rs13476538 50.322 62.680475 A A A D D D A D D A D A D A D A D A D A D A D A
+2 rs3664317 50.322 63.649994 A A A D D D A D D A D A D A D A D A D A D A D A
+2 rs6314726 51.446 63.913680 A A D D D D A D D A D A D A D A D A D A D A D A
+2 rs13476563 51.446 69.932833 A A D D D D A D D A D A D A D A D A D A D A D A
+2 D2Mit92 52.570 71.380491 A A D D D D A D D A D A D A D A D A D A D A A A
+2 rs3664661 52.570 71.399401 A A D D D D A D D A D A D A D A D A D A D A A A
+2 rs6295014 53.693 71.575177 A D D D D D A D D A D A D A D A D A D A D A A A
+2 rs13476581 53.693 74.984720 A D D D D D A D D A D A D A D A D A D A D A A A
+2 rs3683059 54.817 75.306352 A D D D D D A D D A D A D D D A D A D A D A A A
+2 rs3669217 54.817 76.271581 A D D D D D A D D A D A D D D A D A D A D A A A
+2 rs6281904 55.940 76.838542 A D D D D D A D D A D A D D D A D A D A D A A D
+2 gnf02.076.311 55.940 77.455840 A D D D D D A D D A D A D D D A D A D A D A A D
+2 rs13476632 58.380 90.710037 D D D D D D A D D A D A D D D A D A D A D A A A
+2 CEL-2_97928675 58.380 97.835529 D D D D D D A D D A D A D D D A D A D A D A A A
+2 rs13476670 59.503 101.944479 D D D D D D A D D A D A D D D A D A D A D D A A
+2 rs3726330 59.503 103.220934 D D D D D D A D D A D A D D D A D A D A D D A A
+2 rs6242654 61.943 107.041828 D D D A D D A D D A D A D A D A D A D A D D A A
+2 mCV22528760 61.943 116.207552 D D D A D D A D D A D A D A D A D A D A D D A A
+2 rs13476723 63.067 116.984236 D D D A D D A D D A D A D A D A D A D A D A A A
+2 rs13476756 63.067 124.686922 D D D A D D A D D A D A D A D A D A D A D A A A
+2 rs6401493 64.190 124.989213 D D D A D A A D D A D A D A D A D A D A D A A A
+2 rs13469412 64.190 128.825193 D D D A D A A D D A D A D A D A D A D A D A A A
+2 gnf02.127.785 65.314 129.249041 D D D A D A A D A A D A D A D A D A D A D A A A
+2 rs8264884 65.314 130.747572 D D D A D A A D A A D A D A D A D A D A D A A A
+2 rs3690254 66.437 131.218116 D D D A A A A D A A D A D A D A D A D A D A A A
+2 rs13476793 66.437 136.118721 D D D A A A A D A A D A D A D A D A D A D A A A
+2 rs13476805 67.561 139.415500 D D D A A A A D A A D A D A D D D A D A D A A A
+2 rs6397890 67.561 141.643780 D D D A A A A D A A D A D A D D D A D A D A A A
+2 rs6360457 70.000 141.871974 D A D A A A A D A A D A D A D D D A D D D A A A
+2 rs3655895 70.000 144.224817 D A D A A A A D A A D A D A D D D A D D D A A A
+2 rs3696870 78.216 147.343403 D D D A D A A D A A D A D D D D D A D A D D A A
+2 rs3676033 78.216 149.136719 D D D A D A A D A A D A D D D D D A D A D D A A
+2 rs6206791 79.339 149.357316 D A D A D A A D A A D A D D D D D A D A D D A A
+2 UT_2_155.319647 79.339 154.385960 D A D A D A A D A A D A D D D D D A D A D D A A
+2 rs13476868 83.341 158.029049 D A D A D A A A A D D A D D D D D A D A A D A A
+2 UT_2_159.241221 83.341 158.307055 D A D A D A A A A D D A D D D D D A D A A D A A
+2 gnf02.161.674 84.465 158.432219 D A D A D A A A A D D A D D D D D D D A A D A A
+2 rs3693259 84.465 160.658647 D A D A D A A A A D D A D D D D D D D A A D A A
+2 rs3664408 85.588 161.071662 D A D A D A A A A D D A D D D D A D D A A D A A
+2 rs13476881 85.588 161.762648 D A D A D A A A A D D A D D D D A D D A A D A A
+2 D2Mit263 86.712 162.046469 D A D A D A A A A D D A D D D D A D D A D D A A
+2 rs3671849 86.712 162.843979 D A D A D A A A A D D A D D D D A D D A D D A A
+2 rs13476891 89.152 164.425460 D A D A D A A A D D D A D D D D D D D A D D A A
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