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authorZachary Sloan2014-05-19 22:03:31 +0000
committerZachary Sloan2014-05-19 22:03:31 +0000
commit515662ecabd5d3a90eef6987aa5f8d4dbe63611f (patch)
tree60fd5f393190dad650e527f8cdff365e313039c9 /web/gemma/output/HLC_output.log.txt
parent759a7a23b0ea848b8c8ffe2804841322254d8696 (diff)
downloadgenenetwork2-515662ecabd5d3a90eef6987aa5f8d4dbe63611f.tar.gz
Fixed sorting on the show trait page
Added/improved the x and y axis on the bar graph and histogram GEMMA working but still really slow
Diffstat (limited to 'web/gemma/output/HLC_output.log.txt')
-rw-r--r--web/gemma/output/HLC_output.log.txt22
1 files changed, 11 insertions, 11 deletions
diff --git a/web/gemma/output/HLC_output.log.txt b/web/gemma/output/HLC_output.log.txt
index 9dd3d75b..e8107112 100644
--- a/web/gemma/output/HLC_output.log.txt
+++ b/web/gemma/output/HLC_output.log.txt
@@ -10,19 +10,19 @@
## number of phenotypes = 1
## number of total SNPs = 358499
## number of analyzed SNPs = 273349
-## REMLE log-likelihood in the null model = -3121.45
-## MLE log-likelihood in the null model = -3127.35
-## pve estimate in the null model = 0.830303
-## se(pve) in the null model = 0.108674
-## vg estimate in the null model = 347865
-## ve estimate in the null model = 23515.2
-## beta estimate in the null model = 454.076
-## se(beta) = 7.42097
+## REMLE log-likelihood in the null model = -4252.51
+## MLE log-likelihood in the null model = -4261.76
+## pve estimate in the null model = 0.314624
+## se(pve) in the null model = 0.403683
+## vg estimate in the null model = 2.61389e+07
+## ve estimate in the null model = 1.88332e+07
+## beta estimate in the null model = 5107.48
+## se(beta) = 210.014
##
## Computation Time:
-## total computation time = 2.67 min
+## total computation time = 2.5965 min
## computation time break down:
## time on eigen-decomposition = 0.0015 min
-## time on calculating UtX = 0.4125 min
-## time on optimization = 2.10517 min
+## time on calculating UtX = 0.414167 min
+## time on optimization = 2.03267 min
##