Add all the source codes into the github.

author: root 2012-05-08 18:39:56 -0500
committer: root 2012-05-08 18:39:56 -0500
commit: ea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree: 9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/dbdoc/Illum_BXD_Spl_1108.html
parent: 056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
download: genenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
1 files changed, 213 insertions, 0 deletions
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
+<!--<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">-->
+<HTML><HEAD><TITLE>UWA Illumina Spleen (Nov08) RSN **</TITLE>
+<META http-equiv=Content-Type content="text/html; charset=iso-8859-1">
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'>
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'>
+<LINK RELl="stylesheet" href="ajax/css/ajax-tooltip.css" media="screen" type="text/css">
+<script type="text/javascript" src="ajax/js/ajax-dynamic-content.js"></script>
+<script type="text/javascript" src="ajax/js/ajax.js"></script>
+<script type="text/javascript" src="ajax/js/ajax-tooltip.js"></script>
+
+</HEAD>
+<BODY  bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff>
+<TABLE cellSpacing=5 cellPadding=4 width="100%" border=0>
+<TBODY>
+<TR>
+<script language="JavaScript" src="/javascript/header.js"></script>
+</TR>
+<TR>
+<TD bgColor=#eeeeee class="solidBorder">
+<Table width= "100%" cellSpacing=0 cellPadding=5><TR>
+<!-- Body Start from Here -->
+<TD valign="top" height="200" width="100%" bgcolor="#eeeeee">
+<P class="title">UWA Illumina Spleen (Nov08) RSN **  <A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A><BR><BR>Accession number: <A HREF="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=216">GN216</A></P>
+<P><font color="#FF0000">Waiting for the data provider to submit their info file</font></P>
+
+<P class="subtitle">Summary:</P>
+
+<Blockquote>
+<P>All data was generated using female mice, 8 to 10 weeks old. RNA was extracted using the QIAGEN RNAeasy Plus kit. RNA was amplified using the Illumina Illumina TotalPrep RNA Amplification Kit. Sample were hybridized to Illumina MouseRef-8 V1.1 beadchips in 2008.
+
+<P>Illumina 8.1 array data transformed using the Robust Spline Normalization (RSN) method.
+
+<P>Please contact Dr. Grant Morahan (gem@waimr.uwa.edu.au), University of Western Australia, Perth, regarding this new data set.
+
+<P>Data entered by Munish Mehta and Arthur Centeno, November 2, 2008.</P>
+<!-- IF NEEDED
+<P>Users of these mouse eye data may also find the following complementary resources extremely useful:
+<OL>
+<LI> <A HREF="http://www.genenetwork.org" target="_blank" class="fs14">Link 1</A>.
+<LI> <A HREF="http://www.genenetwork.org" target="_blank" class="fs14">Link 2</A>.
+</OL>
+-->
+</Blockquote>
+
+
+<P class="subtitle">About the cases used to generate this set of data:</P>
+
+<Blockquote>
+
+<P>Please contact Dr. Grant Morahan at the University of Western Australia, Perth, regarding these data. All female young adult mice.</P>
+
+
+</Blockquote>
+
+
+<P class="subtitle">About the tissue used to generate this set of data:</P>
+
+<Blockquote>
+<P>eQTL Statistics:  Maximum LRS for this data set is 174.9 for probe ILM3870301 (Gene Symbol H2-Ea). The total number of probes with LOD > 10 and RS > 46 is 166</P>. This is an excellent yield for a data set consisting of 26 BXD strains, both parents and the B2D2F1. The latter three are not used in mapping.
+
+
+<P>
+
+<table border="0" cellpadding="0" cellspacing="0" bgcolor="#000000" width="600">
+<tr><td>
+<table width="600" border="0" cellpadding="5" cellspacing="1" align="left">
+<tr bgcolor="royalblue">
+<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Group</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Age</font></td><td><font color=#FFFFFF>Sex</font></td><td><font color=#FFFFFF>Source</font></td></tr>
+<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>GDP</td><td>129S1/SvImJ</td><td>59</td><td>F</td><td>UTHSC RW</td></tr>
+</table>
+
+</td>
+</tr>
+</table>
+</Blockquote>
+</p>
+
+<P class="subtitle">About downloading this data set:</P>
+<Blockquote>
+<P>Some text here</P>
+</Blockquote>
+
+
+<P class="subtitle">About the array platfrom:</P>
+<Blockquote>
+<P>Some text here</P>
+
+</Blockquote>
+
+
+<P class="subtitle">About data values and data processing:</P>
+
+<Blockquote>
+<P>Some text here</P>
+<P>
+
+<table border="0" cellpadding="0" cellspacing="0" bgcolor="#000000" width="600">
+<tr><td>
+<table width="600" border="0" cellpadding="5" cellspacing="1" align="left">
+<tr bgcolor="royalblue">
+
+<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Original CEL</font></td><td><font color=#FFFFFF>Scale factor</font></td><td><font color=#FFFFFF>Background Average</font></td><td><font color=#FFFFFF>Present</font></td><td><font color=#FFFFFF>Absent</font></td><td><font color=#FFFFFF>Marginal</font></td><td><font color=#FFFFFF>AFFX-b-ActinMur (3'/5')</font></td><td><font color=#FFFFFF>AFFX-GapdhMur (3'/5')</font></td><td><font color=#FFFFFF>Batch Id</font></td><td><font color=#FFFFFF>Used for batch control</font></td></tr>
+<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>129S1/SvImJ</td><td>R2595E.1.CEL</td><td>1.79</td><td>115</td><td>61.00%</td><td>37.50%</td><td>1.50%</td><td>1.46</td><td>0.77</td><td>1</td><td>Y</td></tr>
+</table>
+
+</td>
+</tr>
+</table>
+</Blockquote>
+</p>
+
+
+<P class="subtitle">Data source acknowledgment:</P>
+<Blockquote>
+
+<P>Some text here</P>
+</Blockquote>
+
+
+
+<P class="subtitle">Information about this text file:</P>
+<Blockquote>
+<P>Some text here</P>
+</Blockquote>
+
+<!-- GEO SERIES DATA GOES HERE -->
+<P class="subtitle">GEO Series Data: This section to be used for GEO submission of the whole series of arrays</P>
+<Blockquote>
+<P><B>GSE Series</B>
+<P><B>Status</B>
+<P><B>Title</B>
+<P><B>Organism(s)</B>
+<P><B>Experiment type</B>
+<P><B>Summary</B>
+
+<P><B>Overall design</B>
+<P><B>Contributor(s)</B>
+
+<P><B>Citation(s)</B>
+
+<P>
+<BR><B>Submission date</B>
+<BR><B>Contact name</B>
+<BR><B>E-mails</B>
+<BR><B>Phone</B>
+<BR><B>FAX</B>
+<BR><B>URL</B>
+<BR><B>Organization name</B>
+<BR><B>Department(s)</B>
+<BR><B>Laboratory(s)</B>
+<BR><B>Street address</B>
+<BR><B>City</B>
+<BR><B>State/province</B>
+<BR><B>ZIP/Postal code</B>
+<BR><B>Country</B>
+
+
+<P><B>Platforms</B>
+<P><B>Samples</B>
+<!-- GEO SERIES DATA ENDS HERE -->
+
+</P></Blockquote>
+
+
+
+
+</TR></TABLE>
+</TD>
+</TR>
+<TR>
+<TD align=center bgColor=#ddddff class="solidBorder">
+<!--Start of footer-->
+<TABLE width="90%">
+<script language='JavaScript' src='/javascript/footer.js'></script>
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+<TD colspan=3 class="fs12">
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+</TABLE>
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+new menu (MENU_ITEMS, MENU_POS);
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author	root	2012-05-08 18:39:56 -0500
committer	root	2012-05-08 18:39:56 -0500
commit	ea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree	9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/dbdoc/Illum_BXD_Spl_1108.html
parent	056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
download	genenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz