|
+ UWA Illumina Spleen (Nov08) RSN ** 
Accession number: GN216
+Waiting for the data provider to submit their info file
+
+Summary:
+
+
+All data was generated using female mice, 8 to 10 weeks old. RNA was extracted using the QIAGEN RNAeasy Plus kit. RNA was amplified using the Illumina Illumina TotalPrep RNA Amplification Kit. Sample were hybridized to Illumina MouseRef-8 V1.1 beadchips in 2008.
+
+ Illumina 8.1 array data transformed using the Robust Spline Normalization (RSN) method.
+
+ Please contact Dr. Grant Morahan (gem@waimr.uwa.edu.au), University of Western Australia, Perth, regarding this new data set.
+
+ Data entered by Munish Mehta and Arthur Centeno, November 2, 2008.
+
+
+
+
+About the cases used to generate this set of data:
+
+
+
+Please contact Dr. Grant Morahan at the University of Western Australia, Perth, regarding these data. All female young adult mice.
+
+
+
+
+
+About the tissue used to generate this set of data:
+
+
+eQTL Statistics: Maximum LRS for this data set is 174.9 for probe ILM3870301 (Gene Symbol H2-Ea). The total number of probes with LOD > 10 and RS > 46 is 166 . This is an excellent yield for a data set consisting of 26 BXD strains, both parents and the B2D2F1. The latter three are not used in mapping.
+
+
+
+
+
+
+
+
+| Index | TubeID | Group | Strain | Age | Sex | Source |
+| 1 | R2595E.1 | GDP | 129S1/SvImJ | 59 | F | UTHSC RW |
+
+
+ |
+
+
+
+
+
+About downloading this data set:
+
+Some text here
+
+
+
+About the array platfrom:
+
+Some text here
+
+
+
+
+About data values and data processing:
+
+
+Some text here
+
+
+
+
+
+
+
+| Index | TubeID | Strain | Original CEL | Scale factor | Background Average | Present | Absent | Marginal | AFFX-b-ActinMur (3'/5') | AFFX-GapdhMur (3'/5') | Batch Id | Used for batch control |
+| 1 | R2595E.1 | 129S1/SvImJ | R2595E.1.CEL | 1.79 | 115 | 61.00% | 37.50% | 1.50% | 1.46 | 0.77 | 1 | Y |
+
+
+ |
+
+
+
+
+
+
+Data source acknowledgment:
+
+
+Some text here
+
+
+
+
+Information about this text file:
+
+Some text here
+
+
+
+GEO Series Data: This section to be used for GEO submission of the whole series of arrays
+
+GSE Series
+ Status
+ Title
+ Organism(s)
+ Experiment type
+ Summary
+
+ Overall design
+ Contributor(s)
+
+ Citation(s)
+
+
+ Submission date
+ Contact name
+ E-mails
+ Phone
+ FAX
+ URL
+ Organization name
+ Department(s)
+ Laboratory(s)
+ Street address
+ City
+ State/province
+ ZIP/Postal code
+ Country
+
+
+ Platforms
+ Samples
+
+
+
+
+
+
+
+ |