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authorroot2012-05-08 18:39:56 -0500
committerroot2012-05-08 18:39:56 -0500
commitea46f42ee640928b92947bfb204c41a482d80937 (patch)
tree9b27a4eb852d12539b543c3efee9d2a47ef470f3 /web/dbdoc/Hipp_M430.RO_0706.html
parent056b5253fc3857b0444382aa39944f6344dc1ceb (diff)
downloadgenenetwork2-ea46f42ee640928b92947bfb204c41a482d80937.tar.gz
Add all the source codes into the github.
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
+<HTML><HEAD><TITLE>Hippocampus M430.RO (Oct06) Metadata</TITLE>
+<META http-equiv=Content-Type content="text/html; charset=iso-8859-1">
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'>
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'>
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+ <Table width= "100%" cellSpacing=0 cellPadding=5><TR>
+ <!-- Body Start from Here -->
+
+ <TD vAlign=top width="100%" height=200 bgColor=#eeeeee>
+ <P class="title">Hippocampus M430 R. Overall Data Set<A HREF="/webqtl/main.py?FormID=editHtml">
+ <img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P>
+
+<P>Experimental transform of Hippocampus Consortium data set using a new Cell Definition File generated by Dr. Fan Meng at University of Michigan (see http://brainarray.mbni.med.umich.edu/Brainarray/Aboutus/Aboutus.asp). Implementation by Rupert Overall (Max-Delbruck-Centrum, Berlin).
+
+<P>The ID is the Entrez GeneID. Rupert Overal retransformed the CEL files with the affy.rma package in R using a new CDF file (Mm430_Mm_ENTREZG_8 from the website of Dr. Meng's group in Michigan "<http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp>http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp").
+This bundles together probes belonging to the same Entrez Gene accession together. The raw output of this transform is, in fact, the GeneID with a trailing "_at" which we have removed to simplify translation into Gene Symbols.
+
+
+ </TD>
+
+ <!-- Body End Here -->
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+ <!--//
+ // Note where menu initialization block is located in HTML document.
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+ new menu (MENU_ITEMS, MENU_POS);
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