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authorFrederick Muriuki Muriithi2022-03-10 08:55:26 +0300
committerFrederick Muriuki Muriithi2022-03-10 08:55:26 +0300
commit4a7e2c1602ed82aabd7d04953067ba49cb1cebff (patch)
treeea8c0cf11f1629d79844b2a4e9bb49a69e0bba33 /scripts/maintenance/utilities.py
parent80b02d37f60d172be01bf8cd62bd84b406b1e0dd (diff)
downloadgenenetwork2-4a7e2c1602ed82aabd7d04953067ba49cb1cebff.tar.gz
Use context manager with database connection
Use the `with` context manager with database connections and cursors to ensure that they are closed once they are no longer needed. Where it was not feasible to use the `with` context manager without a huge refactor/rewrite, the cursors and connections are closed manually.
Diffstat (limited to 'scripts/maintenance/utilities.py')
-rw-r--r--scripts/maintenance/utilities.py10
1 files changed, 0 insertions, 10 deletions
diff --git a/scripts/maintenance/utilities.py b/scripts/maintenance/utilities.py
index 886410c2..1fe14809 100644
--- a/scripts/maintenance/utilities.py
+++ b/scripts/maintenance/utilities.py
@@ -1,16 +1,6 @@
-import MySQLdb
import re
import configparser
-def get_cursor():
- host = 'tux.uthsc.edu'
- user = 'webqtlout'
- passwd = 'webqtlout'
- db = 'db_webqtl'
- con = MySQLdb.Connect(db=db, host=host, user=user, passwd=passwd)
- cursor = con.cursor()
- return cursor, con
-
def clearspaces(s, default=None):
if s:
s = re.sub('\s+', ' ', s)