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authorMunyoki Kilyungi2024-02-01 15:42:31 +0300
committerBonfaceKilz2024-03-26 10:01:13 +0300
commit0e05c049147c6be8c49d17e51c50440d00c28003 (patch)
tree55433374587d2583e6b28b079f2984f61f15edff /gn2
parentb58afcc53f34e3af6dcebd0553fc25b25d3a2f9d (diff)
downloadgenenetwork2-0e05c049147c6be8c49d17e51c50440d00c28003.tar.gz
Integrate CKEditor into metadata editing.
* gn2/wqflask/__init__.py: Register blueprint endpoint for metadata edits. * gn2/wqflask/edit.py (metadata_edit): New function. (save): Ditto. * gn2/wqflask/templates/metadata/dataset.html: New template. * gn2/wqflask/templates/metadata/editor.html: New template. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn2')
-rw-r--r--gn2/wqflask/__init__.py3
-rw-r--r--gn2/wqflask/edit.py48
-rw-r--r--gn2/wqflask/templates/metadata/dataset.html12
-rw-r--r--gn2/wqflask/templates/metadata/editor.html77
4 files changed, 138 insertions, 2 deletions
diff --git a/gn2/wqflask/__init__.py b/gn2/wqflask/__init__.py
index 8e96228d..325a1cef 100644
--- a/gn2/wqflask/__init__.py
+++ b/gn2/wqflask/__init__.py
@@ -21,6 +21,7 @@ from gn3.authentication import DataRole, AdminRole
from gn2.wqflask.group_manager import group_management
from gn2.wqflask.resource_manager import resource_management
from gn2.wqflask.metadata_edits import metadata_edit
+from gn2.wqflask.edit import metadata
from gn2.wqflask.api.markdown import glossary_blueprint
from gn2.wqflask.api.markdown import references_blueprint
@@ -89,6 +90,8 @@ app.register_blueprint(jupyter_notebooks, url_prefix="/jupyter_notebooks")
app.register_blueprint(resource_management, url_prefix="/resource-management")
app.register_blueprint(metadata_edit, url_prefix="/datasets/")
+app.register_blueprint(metadata,
+ url_prefix="/metadata/")
app.register_blueprint(group_management, url_prefix="/group-management")
app.register_blueprint(jobs_bp, url_prefix="/jobs")
app.register_blueprint(oauth2, url_prefix="/oauth2")
diff --git a/gn2/wqflask/edit.py b/gn2/wqflask/edit.py
new file mode 100644
index 00000000..8d176608
--- /dev/null
+++ b/gn2/wqflask/edit.py
@@ -0,0 +1,48 @@
+import requests
+
+from pathlib import Path
+
+from flask import (Blueprint,
+ redirect,
+ render_template,
+ request)
+
+from gn2.wqflask.decorators import login_required
+from gn2.utility.tools import GN3_LOCAL_URL
+
+
+metadata = Blueprint("metadata", __name__)
+
+
+@metadata.route("/edit")
+@login_required(pagename="Dataset Metadata Editing")
+def metadata_edit():
+ match request.args.get("type"):
+ case "dcat:Dataset":
+ metadata = requests.get(
+ Path(
+ GN3_LOCAL_URL,
+ "metadata/datasets/",
+ (_name := request.args.get("name"))
+ ).as_posix()
+ ).json()
+ __section = request.args.get("section")
+ return render_template(
+ "metadata/editor.html",
+ name=_name,
+ metadata=metadata,
+ section=__section,
+ edit=metadata.get(__section),
+ )
+
+
+@metadata.route("/save", methods=["POST"])
+@login_required(pagename="Dataset Metadata Editing")
+def save():
+ __content = request.form.get("editor")
+ __summary = request.form.get("summary")
+ __type = request.form.get("type")
+ match __type:
+ case "dcat:Dataset":
+ # XXX: TODO: Method for saving data
+ return redirect(f"/datasets/{request.form.get('label')}")
diff --git a/gn2/wqflask/templates/metadata/dataset.html b/gn2/wqflask/templates/metadata/dataset.html
index 23ceb3b5..1946d01a 100644
--- a/gn2/wqflask/templates/metadata/dataset.html
+++ b/gn2/wqflask/templates/metadata/dataset.html
@@ -93,9 +93,17 @@
</div>
</div>
- <div class="container row dataset-metadata">
+ <div id="dataset-description" class="container row dataset-metadata">
{% if dataset.description %}
- <div>{{ dataset.description|safe }}</div>
+ <h3>
+ Description
+ <sup>
+ [&nbsp;
+ <a href="/metadata/edit?type=dcat:Dataset&section=description&name={{ dataset.label}}" target="_blank">edit</a>
+ &nbsp;]
+ </sup>
+ </h3>
+ <div>{{ dataset.description|safe }}</div>g
{% endif %}
{% if dataset.experimentType %}
diff --git a/gn2/wqflask/templates/metadata/editor.html b/gn2/wqflask/templates/metadata/editor.html
new file mode 100644
index 00000000..2c026c93
--- /dev/null
+++ b/gn2/wqflask/templates/metadata/editor.html
@@ -0,0 +1,77 @@
+{% extends "base.html" %}
+
+{% block css %}
+<style>
+ .panel {
+ width: 90%;
+ margin: 2em;
+ }
+</style>
+{% endblock %}
+
+{% block content %}
+
+<section class="container">
+ <h1>{{ name }}</h1>
+ <div class="row">
+ <div class="panel-about panel panel-info text-muted">
+ <div class="panel-heading">
+ <strong>{{ section|capitalize }}</strong>
+ </div>
+ <div class="panel-body">
+ <form action="/metadata/save" method="POST">
+ <input name="type" type="hidden" value="{{ metadata.type }}"/>
+ <input name="label" type="hidden" value="{{ metadata.label }}"/>
+
+ {% if metadata.type == "dcat:Dataset" %}
+ <input name="accession-id" type="hidden" value="{{ metadata.accessionId }}"/>
+ {% endif %}
+
+ <textarea name="editor" id="editor">
+{{ edit|safe }}
+ </textarea>
+ <br/>
+ <label for="summary">
+ Edit Summary (Briefly describe your changes)
+ </label>
+ <br/>
+ <textarea cols="80" name="summary" rows="3" autocomplete="on" autocorrection="on" id="summary"></textarea>
+ <br/>
+ <input type="submit" class="btn btn-primary" value="Publish changes" />
+ </form>
+ </div>
+ </div>
+ </div>
+</section>
+{% endblock %}
+
+
+{% block js %}
+<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='ckeditor/ckeditor.js') }}"></script>
+
+<script>
+ function isWysiwygareaAvailable() {
+ if ( CKEDITOR.revision == ( '%RE' + 'V%' ) ) {
+ return true;
+ }
+
+ return !!CKEDITOR.plugins.get( 'wysiwygarea' );
+ }
+
+ if ( CKEDITOR.env.ie && CKEDITOR.env.version < 9 )
+ CKEDITOR.tools.enableHtml5Elements( document );
+
+ CKEDITOR.config.height = 250;
+ CKEDITOR.config.width = 'auto';
+
+ let editorElement = CKEDITOR.document.getById( 'editor' );
+ let wysiwygareaAvailable = isWysiwygareaAvailable();
+ if ( wysiwygareaAvailable ) {
+ CKEDITOR.replace( 'editor' );
+ } else {
+ editorElement.setAttribute( 'contenteditable', 'true' );
+ CKEDITOR.inline( 'editor' );
+ }
+</script>
+{% endblock %}
+