Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.

1 files changed, 114 insertions, 0 deletions

diff --git a/gn2/wqflask/templates/pair_scan_results.html b/gn2/wqflask/templates/pair_scan_results.html
new file mode 100644
index 00000000..dbd90bc7
--- /dev/null
+++ b/gn2/wqflask/templates/pair_scan_results.html
@@ -0,0 +1,114 @@
+{% extends "base.html" %}
+{% block title %}Pair Scan{% endblock %}
+{% block css %}
+<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" />
+<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='d3-tip/d3-tip.css') }}" />
+<link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" />
+<link rel="stylesheet" type="text/css" href="/static/new/css/d3panels.min.css" />
+<link rel="stylesheet" type="text/css" href="/static/new/css/pair_scan.css" />
+{% endblock %}
+
+{% block content %} <!-- Start of body -->
+
+{{ header("Mapping",
+    '{}: {}'.format(this_trait.name, this_trait.description_fmt)) }}
+
+<div id="main_div" class="container">
+    <div>
+        <h2>
+            Pair Scan
+        </h2>
+    </div>
+    <div class="qtlcharts" id="chart_container">
+        <div id="pairscan_chart"></div>
+    </div>
+    <div class="pairscan-container">
+        <h2>
+            Results
+        </h2>
+        <table cellpadding="0" cellspacing="0" border="0" id="pair_scan_results" class="table table-hover table-striped table-bordered">
+            <thead>
+                <tr>
+                    <th colspan="3">Interval 1</th>
+                    <th rowspan="3">LOD</th>
+                    <th colspan="3">Interval 2</th>
+                </tr>
+                <tr>
+                    <th rowspan="2">Position</th>
+                    <th colspan="2">Flanking Markers</th>
+                    <th rowspan="2">Position</th>
+                    <th colspan="2">Flanking Markers</th>
+                </tr>
+                <tr>
+                    <th>Proximal</th>
+                    <th>Distal</th>
+                    <th>Proximal</th>
+                    <th>Distal</th>
+                </tr>
+            </thead>
+            <tbody>
+                {% for row in table_data %}
+                <tr>
+                    <td>{{ row.pos1 }}</td>
+                    <td>{{ row.proximal1 }}</td>
+                    <td>{{ row.distal1 }}</td>
+                    <td>{{ row.lod }}</td>
+                    <td>{{ row.pos2 }}</td>
+                    <td>{{ row.proximal2 }}</td>
+                    <td>{{ row.distal2 }}</td>
+                </tr>
+                {% endfor %}
+            </tbody>
+        </table>
+    </div>
+</div>
+
+{% endblock %}
+
+{% block js %}  
+
+<script>
+    var figure_data = {{ figure_data | safe }}
+</script>
+
+<script src="https://d3js.org/d3.v7.min.js"></script>
+<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.js') }}"></script>
+<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script>
+<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/scientific.js') }}"></script>
+<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/scroller/js/dataTables.scroller.min.js') }}"></script>
+<script language="javascript" type="text/javascript" src="/static/new/javascript/d3panels.min.js"></script>
+
+<script type="text/javascript">
+
+var data, mychart;
+
+mychart = d3panels.lod2dheatmap({
+    equalCells: true
+});
+
+mychart(d3.select('div#pairscan_chart'), figure_data);
+
+table_conf = {
+                "columns":[
+                    { "width": "165px" },
+                    { "width": "130px" },
+                    { "width": "130px" },
+                    { "width": "50px" },
+                    { "width": "165px" },
+                    { "width": "130px" },
+                    { "width": "130px" },
+                ],
+                "sDom": "itir",
+                "autoWidth": false,
+                "bSortClasses": false,
+                "order": [[3, "desc" ]],
+                "scrollY": "100vh",
+                "scroller":  true,
+                "scrollCollapse": true
+            }
+
+trait_table = $('#pair_scan_results').DataTable(table_conf);
+
+</script>
+
+{% endblock %}