Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.

1 files changed, 101 insertions, 0 deletions

diff --git a/gn2/wqflask/templates/generif.html b/gn2/wqflask/templates/generif.html
new file mode 100644
index 00000000..ac815b43
--- /dev/null
+++ b/gn2/wqflask/templates/generif.html
@@ -0,0 +1,101 @@
+{% extends "base.html" %}
+
+{% block title %}
+GeneWiki Entry for {{ symbol }}
+{% endblock %}
+
+{% block css %}
+<style>
+
+ .badge {
+     vertical-align: top;
+     background-color: #336699;
+ }
+
+ .list-group {
+     counter-reset: gnentries;
+ }
+
+ summary::before {
+     counter-increment: gnentries;
+     content: counter(gnentries) "." " ";
+ }
+
+ summary:hover {
+     cursor: zoom-in;
+ }
+</style>
+
+{% endblock %}
+{% block content %}
+
+
+<div class="container">
+    <h1 class="page-header">GeneWiki For {{ symbol }}</h1>
+    <p class="well"><strong>GeneWiki</strong> enables you to enrich the annotation of genes and transcripts.</p>
+
+    <h3>
+	<strong>GeneNetwork</strong>
+	<span class="badge">
+	    {{ entries.gn_entries|length if entries.gn_entries[0] else 0 }}
+	</span>:
+    </h3>
+    {% if entries.gn_entries[0] %}
+    <ul class="list-group">
+	{% for entry in entries.gn_entries %}
+	<li class="list-group-item">
+	    <details>
+		<summary>
+		    {{ entry["entry"]["value"] }}
+		    {% if entry.get("weburl") %}
+		    <sup><small><a href="{{ entry.weburl.value }}" target="_blank"><span class="glyphicon glyphicon-globe" aria-hidden="true"></span> web</a></small></sup>
+		    {% endif %}
+		</summary>
+		<dl class="dl-horizontal">
+		    <dt>Author:</dt>
+		    <dd>{{ entry["author"]["value"] }}</dd>
+
+		    {% if entry.get("geneCategory") %}
+		    <dt>Category:</dt>
+		    <dd>{{ entry["geneCategory"]["value"]}}</dd>
+		    {% endif %}
+
+		    <dt>Add Time:</dt>
+		    <dd>{{ entry["created"]["value"]}}</dd>
+		</dl>
+	    </details>
+	</li>
+	{% endfor %}
+    </ul>
+
+    {% else %}
+
+    <p class="well"><u>There are no GeneNetwork entries for <b>{{ symbol }}.</b></u></p>
+
+    {% endif %}
+
+    <h3>
+	<strong>GeneRIF from NCBI</strong>
+	<span class="badge">
+	    {{ entries.ncbi_entries|length if entries.ncbi_entries[0] else 0 }}
+	</span>:
+    </h3>
+    {% if entries.ncbi_entries[0] %}
+	<ol>
+	{% for entry in entries.ncbi_entries %}
+	<li>
+	    {{ entry.entry.value }}
+	    (<a href="{{ entry['generif']['value'] }}" target="_blank">{{ entry["speciesBinomialName"]["value"] }}</a>)
+            {% if entry.PubMedId.value != "" %}
+	    {% set pmids = entry.PubMedId.value.split(",") %}
+	    (PubMed: {% for id in pmids %} <a href="http://rdf.ncbi.nlm.nih.gov/pubmed/{{ id }}" target="_blank">{{ id }}</a>{% endfor %})
+	    <sup><small><em>{{ entry.createdOn.value }}</em></small></sup>
+	    {% endif %}
+	</li>
+	{% endfor %}
+    </ol>
+    {% else %}
+    <p class="well"><u>There are no NCBI entries for <b>{{ symbol }}.</b></u></p>
+    {% endif %}
+</div>
+{% endblock %}