Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.

1 files changed, 77 insertions, 0 deletions

diff --git a/gn2/wqflask/templates/ctl_results.html b/gn2/wqflask/templates/ctl_results.html
new file mode 100644
index 00000000..1c31b499
--- /dev/null
+++ b/gn2/wqflask/templates/ctl_results.html
@@ -0,0 +1,77 @@
+{% extends "base.html" %}
+{% block css %}
+    <link rel="stylesheet" type="text/css" href="/static/new/css/network_graph.css" />
+    <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='cytoscape-panzoom/cytoscape.js-panzoom.css') }}">
+    <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='qtip2/jquery.qtip.min.css') }}">
+    <style>
+        /* The Cytoscape Web container must have its dimensions set. */
+        html, body { height: 100%; width: 100%; padding: 0; margin: 0; }
+        #cytoscapeweb { width: 70%; height: 70%; }
+    </style>
+{% endblock %}
+
+{% block title %}CTL results{% endblock %}
+
+{% block content %} <!-- Start of body -->
+<div class="container">
+  <h1>CTL Results</h1>
+  {{(request.form['trait_list'].split(',')|length)}} phenotypes as input<br>
+
+  <!--
+  <a href="/tmp/{{ results['imgurl1'] }}">
+      <img alt="Embedded Image" src="data:image/png;base64,
+      {% for elem in results['imgdata1'] -%}
+      {% print("%c"|format(elem)) %}
+      {%- endfor %}
+      " /></a> -->
+
+  <h3>CTL/QTL Plots for individual traits</h3>
+  {% for r in range(2, (request.form['trait_list'].split(',')|length +1)) %}
+  <a href="/tmp/{{ results['imgurl' + r|string] }}">
+      <img width=100 height=100 alt="Embedded Image" src="data:image/png;base64,
+      {% for elem in results['imgdata' + r|string] -%}
+      {% print("%c"|format(elem)) %}
+      {%- endfor %}
+      " /></a>
+  {% endfor %}
+  <h3>Tabular results</h3>
+  <table width="80%">
+  <tr><th>trait</th><th>marker</th><th>trait</th><th>LOD</th><th>dCor</th></tr>
+  significant CTL:<br>
+  {% for r in range(results['ctlresult'][0]|length) %}
+    <tr>
+    {% for c in range(results['ctlresult']|length) %}
+      <td>
+      {% if c > 2 %}
+      {{results['ctlresult'][c][r]|float|round(2)}}
+      {% else %}
+      {{results['ctlresult'][c][r]}}
+      {% endif %}
+      </td>
+    {% endfor %}
+    </tr>
+  {% endfor %}
+  </table>
+  <h3>Network Figure</h3>
+  <div id="cytoscapeweb" class="col-xs-9" style="min-height:700px !important;"></div>
+</div>
+{% endblock %}
+
+{% block js %}
+
+    <script>
+        elements_list = {{ elements | safe }}
+        gn2_url = "{{ gn2_url | safe }}"
+    </script>
+
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.js') }}"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='qtip2/jquery.qtip.min.js') }}"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='js_alt/underscore.min.js') }}"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='cytoscape/cytoscape.min.js') }}"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='cytoscape-panzoom/cytoscape-panzoom.js') }}"></script>
+    <!-- should be using cytoscape-popper for tips, see docs -->
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='cytoscape-qtip/cytoscape-qtip.js') }}"></script>
+
+    <script language="javascript" type="text/javascript" src="/static/new/javascript/ctl_graph.js"></script>
+
+{% endblock %}