Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.

94 files changed, 22430 insertions, 0 deletions

diff --git a/gn2/wqflask/static/new/css/autocomplete.css b/gn2/wqflask/static/new/css/autocomplete.css
new file mode 100644
index 00000000..1501e280
--- /dev/null
+++ b/gn2/wqflask/static/new/css/autocomplete.css
@@ -0,0 +1,85 @@
+.autocomplete {
+    /*the container must be positioned relative:*/
+    position: relative;
+    display: inline-block;
+
+
+}
+
+input.autocomplete {
+    border: 1px solid transparent;
+    background-color: #f1f1f1;
+    padding: 10px;
+    font-size: 16px;
+}
+
+input[type=text].autocomplete {
+    background-color: #f1f1f1;
+    width: 100%;
+}
+
+input[type=submit].autocomplete {
+    background-color: DodgerBlue;
+    color: #fff;
+}
+
+.autocomplete-items {
+    position: absolute;
+    border: 1px solid #d4d4d4;
+    border-bottom: none;
+    border-top: none;
+    z-index: 99;
+    /*position the autocomplete items to be the same width as the container:*/
+    top: 100%;
+    left: 0;
+    right: 0;
+   border:1px solid black;
+   border-top:none;
+   box-shadow: rgba(0, 0, 0, 0.25) 0px 54px 55px, rgba(0, 0, 0, 0.12) 0px -12px 30px, rgba(0, 0, 0, 0.12) 0px 4px 6px, rgba(0, 0, 0, 0.17) 0px 12px 13px, rgba(0, 0, 0, 0.09) 0px -3px 5px;
+
+}
+
+.autocomplete-items div {
+    padding: 10px;
+    cursor: pointer;
+    background-color: #fff;
+    border-bottom: 1px dotted #d4d4d4;
+}
+
+.autocomplete-items div:hover {
+    /*when hovering an item:*/
+    background-color: #e9e9e9;
+}
+
+.autocomplete-active {
+    /*when navigating through the items using the arrow keys:*/
+    background-color: DodgerBlue !important;
+    color: #ffffff;
+}
+
+.recent-search-title {
+    display: -webkit-box;
+    display: -moz-box;
+    display: -ms-flexbox;
+    display: -webkit-flex;
+    display: flex;
+}
+
+.recent-search-title * {
+    -webkit-box-flex: 1 1 auto;
+    -moz-box-flex: 1 1 auto;
+    -webkit-flex: 1 1 auto;
+    -ms-flex: 1 1 auto;
+    flex: 1 1 auto;
+}
+
+
+.recent-search-title input[type="button"] {
+    border: none;
+    background: none;
+    cursor: pointer;
+    margin: 0;
+    padding: 0;
+    color: blue;
+
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/bar_chart.css b/gn2/wqflask/static/new/css/bar_chart.css
new file mode 100644
index 00000000..20730c2f
--- /dev/null
+++ b/gn2/wqflask/static/new/css/bar_chart.css
@@ -0,0 +1,23 @@
+.barchart .axis path,
+.barchart .axis line {
+  fill: none;
+  stroke: #000;
+  shape-rendering: crispEdges;
+}
+
+.bar {
+  fill: steelblue;
+  shape-rendering: crispEdges;
+}
+
+#legend-left, #legend-right {
+  font-size: 20px;
+}
+
+.nvd3 .nv-group {
+  fill-opacity: .9 !important;
+}
+
+.nvtooltip table td.legend-color-guide div {
+  display: none;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/bootstrap-custom.css b/gn2/wqflask/static/new/css/bootstrap-custom.css
new file mode 100644
index 00000000..007dcc44
--- /dev/null
+++ b/gn2/wqflask/static/new/css/bootstrap-custom.css
@@ -0,0 +1,7560 @@
+/*!
+ * Bootstrap v3.3.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+
+/*! normalize.css v3.0.2 | MIT License | git.io/normalize */
+html {
+    font-family: sans-serif;
+    -webkit-text-size-adjust: 100%;
+    -ms-text-size-adjust: 100%;
+}
+
+body {
+    margin: 0;
+}
+
+article,
+aside,
+details,
+figcaption,
+figure,
+footer,
+header,
+hgroup,
+main,
+menu,
+nav,
+section,
+summary {
+    display: block;
+}
+
+audio,
+canvas,
+progress,
+video {
+    display: inline-block;
+    vertical-align: baseline;
+}
+
+audio:not([controls]) {
+    display: none;
+    height: 0;
+}
+
+[hidden],
+template {
+    display: none;
+}
+
+a {
+    background-color: transparent;
+}
+
+a:active,
+a:hover {
+    outline: 0;
+}
+
+abbr[title] {
+    border-bottom: 1px dotted;
+}
+
+b,
+strong {
+    font-weight: bold;
+}
+
+dfn {
+    font-style: italic;
+}
+
+h1 {
+    margin: .67em 0;
+    font-size: 2em;
+}
+
+mark {
+    color: #000;
+    background: #ff0;
+}
+
+small {
+    font-size: 80%;
+}
+
+sub,
+sup {
+    position: relative;
+    font-size: 75%;
+    line-height: 0;
+    vertical-align: baseline;
+}
+
+sup {
+    top: -.5em;
+}
+
+sub {
+    bottom: -.25em;
+}
+
+img {
+    border: 0;
+}
+
+svg:not(:root) {
+    overflow: hidden;
+}
+
+figure {
+    margin: 1em 40px;
+}
+
+hr {
+    height: 0;
+    -webkit-box-sizing: content-box;
+    -moz-box-sizing: content-box;
+    box-sizing: content-box;
+}
+
+pre {
+    overflow: auto;
+}
+
+code,
+kbd,
+pre,
+samp {
+    font-family: monospace, monospace;
+    font-size: 1em;
+}
+
+button,
+input,
+optgroup,
+select,
+textarea {
+    margin: 0;
+    font: inherit;
+    color: inherit;
+}
+
+button {
+    overflow: visible;
+}
+
+button,
+select {
+    text-transform: none;
+}
+
+button,
+html input[type="button"],
+input[type="reset"],
+input[type="submit"] {
+    -webkit-appearance: button;
+    cursor: pointer;
+}
+
+button[disabled],
+html input[disabled] {
+    cursor: default;
+}
+
+button::-moz-focus-inner,
+input::-moz-focus-inner {
+    padding: 0;
+    border: 0;
+}
+
+input {
+    line-height: normal;
+}
+
+input[type="checkbox"],
+input[type="radio"] {
+    -webkit-box-sizing: border-box;
+    -moz-box-sizing: border-box;
+    box-sizing: border-box;
+    padding: 0;
+}
+
+input[type="number"]::-webkit-inner-spin-button,
+input[type="number"]::-webkit-outer-spin-button {
+    height: auto;
+}
+
+input[type="search"] {
+    -webkit-box-sizing: content-box;
+    -moz-box-sizing: content-box;
+    box-sizing: content-box;
+    -webkit-appearance: textfield;
+}
+
+input[type="search"]::-webkit-search-cancel-button,
+input[type="search"]::-webkit-search-decoration {
+    -webkit-appearance: none;
+}
+
+fieldset {
+    padding: .35em .625em .75em;
+    margin: 0 2px;
+    border: 1px solid #c0c0c0;
+}
+
+legend {
+    padding: 0;
+    border: 0;
+}
+
+textarea {
+    overflow: auto;
+}
+
+optgroup {
+    font-weight: bold;
+}
+
+table {
+    border-spacing: 0;
+    border-collapse: collapse;
+}
+
+td,
+th {
+    padding: 0;
+}
+
+/*! Source: https://github.com/h5bp/html5-boilerplate/blob/master/src/css/main.css */
+@media print {
+
+    *,
+    *:before,
+    *:after {
+        color: #000 !important;
+        text-shadow: none !important;
+        background: transparent !important;
+        -webkit-box-shadow: none !important;
+        box-shadow: none !important;
+    }
+
+    a,
+    a:visited {
+        text-decoration: underline;
+    }
+
+    a[href]:after {
+        content: " ("attr(href) ")";
+    }
+
+    abbr[title]:after {
+        content: " ("attr(title) ")";
+    }
+
+    a[href^="#"]:after,
+    a[href^="javascript:"]:after {
+        content: "";
+    }
+
+    pre,
+    blockquote {
+        border: 1px solid #999;
+
+        page-break-inside: avoid;
+    }
+
+    thead {
+        display: table-header-group;
+    }
+
+    tr,
+    img {
+        page-break-inside: avoid;
+    }
+
+    img {
+        max-width: 100% !important;
+    }
+
+    p,
+    h2,
+    h3 {
+        orphans: 3;
+        widows: 3;
+    }
+
+    h2,
+    h3 {
+        page-break-after: avoid;
+    }
+
+    select {
+        background: #fff !important;
+    }
+
+    .navbar {
+        display: none;
+    }
+
+    .btn>.caret,
+    .dropup>.btn>.caret {
+        border-top-color: #000 !important;
+    }
+
+    .label {
+        border: 1px solid #000;
+    }
+
+    .table {
+        border-collapse: collapse !important;
+    }
+
+    .table td,
+    .table th {
+        background-color: #fff !important;
+    }
+
+    .table-bordered th,
+    .table-bordered td {
+        border: 1px solid #000 !important;
+    }
+}
+
+@font-face {
+    font-family: 'Glyphicons Halflings';
+
+    src: url('../fonts/glyphicons-halflings-regular.eot');
+    src: url('../fonts/glyphicons-halflings-regular.eot?#iefix') format('embedded-opentype'), url('../fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular') format('svg');
+}
+
+.glyphicon {
+    position: relative;
+    top: 1px;
+    display: inline-block;
+    font-family: 'Glyphicons Halflings';
+    font-style: normal;
+    font-weight: normal;
+    line-height: 1;
+
+    -webkit-font-smoothing: antialiased;
+    -moz-osx-font-smoothing: grayscale;
+}
+
+.glyphicon-asterisk:before {
+    content: "\2a";
+}
+
+.glyphicon-plus:before {
+    content: "\2b";
+}
+
+.glyphicon-euro:before,
+.glyphicon-eur:before {
+    content: "\20ac";
+}
+
+.glyphicon-minus:before {
+    content: "\2212";
+}
+
+.glyphicon-cloud:before {
+    content: "\2601";
+}
+
+.glyphicon-envelope:before {
+    content: "\2709";
+}
+
+.glyphicon-pencil:before {
+    content: "\270f";
+}
+
+.glyphicon-glass:before {
+    content: "\e001";
+}
+
+.glyphicon-music:before {
+    content: "\e002";
+}
+
+.glyphicon-search:before {
+    content: "\e003";
+}
+
+.glyphicon-heart:before {
+    content: "\e005";
+}
+
+.glyphicon-star:before {
+    content: "\e006";
+}
+
+.glyphicon-star-empty:before {
+    content: "\e007";
+}
+
+.glyphicon-user:before {
+    content: "\e008";
+}
+
+.glyphicon-film:before {
+    content: "\e009";
+}
+
+.glyphicon-th-large:before {
+    content: "\e010";
+}
+
+.glyphicon-th:before {
+    content: "\e011";
+}
+
+.glyphicon-th-list:before {
+    content: "\e012";
+}
+
+.glyphicon-ok:before {
+    content: "\e013";
+}
+
+.glyphicon-remove:before {
+    content: "\e014";
+}
+
+.glyphicon-zoom-in:before {
+    content: "\e015";
+}
+
+.glyphicon-zoom-out:before {
+    content: "\e016";
+}
+
+.glyphicon-off:before {
+    content: "\e017";
+}
+
+.glyphicon-signal:before {
+    content: "\e018";
+}
+
+.glyphicon-cog:before {
+    content: "\e019";
+}
+
+.glyphicon-trash:before {
+    content: "\e020";
+}
+
+.glyphicon-home:before {
+    content: "\e021";
+}
+
+.glyphicon-file:before {
+    content: "\e022";
+}
+
+.glyphicon-time:before {
+    content: "\e023";
+}
+
+.glyphicon-road:before {
+    content: "\e024";
+}
+
+.glyphicon-download-alt:before {
+    content: "\e025";
+}
+
+.glyphicon-download:before {
+    content: "\e026";
+}
+
+.glyphicon-upload:before {
+    content: "\e027";
+}
+
+.glyphicon-inbox:before {
+    content: "\e028";
+}
+
+.glyphicon-play-circle:before {
+    content: "\e029";
+}
+
+.glyphicon-repeat:before {
+    content: "\e030";
+}
+
+.glyphicon-refresh:before {
+    content: "\e031";
+}
+
+.glyphicon-list-alt:before {
+    content: "\e032";
+}
+
+.glyphicon-lock:before {
+    content: "\e033";
+}
+
+.glyphicon-flag:before {
+    content: "\e034";
+}
+
+.glyphicon-headphones:before {
+    content: "\e035";
+}
+
+.glyphicon-volume-off:before {
+    content: "\e036";
+}
+
+.glyphicon-volume-down:before {
+    content: "\e037";
+}
+
+.glyphicon-volume-up:before {
+    content: "\e038";
+}
+
+.glyphicon-qrcode:before {
+    content: "\e039";
+}
+
+.glyphicon-barcode:before {
+    content: "\e040";
+}
+
+.glyphicon-tag:before {
+    content: "\e041";
+}
+
+.glyphicon-tags:before {
+    content: "\e042";
+}
+
+.glyphicon-book:before {
+    content: "\e043";
+}
+
+.glyphicon-bookmark:before {
+    content: "\e044";
+}
+
+.glyphicon-print:before {
+    content: "\e045";
+}
+
+.glyphicon-camera:before {
+    content: "\e046";
+}
+
+.glyphicon-font:before {
+    content: "\e047";
+}
+
+.glyphicon-bold:before {
+    content: "\e048";
+}
+
+.glyphicon-italic:before {
+    content: "\e049";
+}
+
+.glyphicon-text-height:before {
+    content: "\e050";
+}
+
+.glyphicon-text-width:before {
+    content: "\e051";
+}
+
+.glyphicon-align-left:before {
+    content: "\e052";
+}
+
+.glyphicon-align-center:before {
+    content: "\e053";
+}
+
+.glyphicon-align-right:before {
+    content: "\e054";
+}
+
+.glyphicon-align-justify:before {
+    content: "\e055";
+}
+
+.glyphicon-list:before {
+    content: "\e056";
+}
+
+.glyphicon-indent-left:before {
+    content: "\e057";
+}
+
+.glyphicon-indent-right:before {
+    content: "\e058";
+}
+
+.glyphicon-facetime-video:before {
+    content: "\e059";
+}
+
+.glyphicon-picture:before {
+    content: "\e060";
+}
+
+.glyphicon-map-marker:before {
+    content: "\e062";
+}
+
+.glyphicon-adjust:before {
+    content: "\e063";
+}
+
+.glyphicon-tint:before {
+    content: "\e064";
+}
+
+.glyphicon-edit:before {
+    content: "\e065";
+}
+
+.glyphicon-share:before {
+    content: "\e066";
+}
+
+.glyphicon-check:before {
+    content: "\e067";
+}
+
+.glyphicon-move:before {
+    content: "\e068";
+}
+
+.glyphicon-step-backward:before {
+    content: "\e069";
+}
+
+.glyphicon-fast-backward:before {
+    content: "\e070";
+}
+
+.glyphicon-backward:before {
+    content: "\e071";
+}
+
+.glyphicon-play:before {
+    content: "\e072";
+}
+
+.glyphicon-pause:before {
+    content: "\e073";
+}
+
+.glyphicon-stop:before {
+    content: "\e074";
+}
+
+.glyphicon-forward:before {
+    content: "\e075";
+}
+
+.glyphicon-fast-forward:before {
+    content: "\e076";
+}
+
+.glyphicon-step-forward:before {
+    content: "\e077";
+}
+
+.glyphicon-eject:before {
+    content: "\e078";
+}
+
+.glyphicon-chevron-left:before {
+    content: "\e079";
+}
+
+.glyphicon-chevron-right:before {
+    content: "\e080";
+}
+
+.glyphicon-plus-sign:before {
+    content: "\e081";
+}
+
+.glyphicon-minus-sign:before {
+    content: "\e082";
+}
+
+.glyphicon-remove-sign:before {
+    content: "\e083";
+}
+
+.glyphicon-ok-sign:before {
+    content: "\e084";
+}
+
+.glyphicon-question-sign:before {
+    content: "\e085";
+}
+
+.glyphicon-info-sign:before {
+    content: "\e086";
+}
+
+.glyphicon-screenshot:before {
+    content: "\e087";
+}
+
+.glyphicon-remove-circle:before {
+    content: "\e088";
+}
+
+.glyphicon-ok-circle:before {
+    content: "\e089";
+}
+
+.glyphicon-ban-circle:before {
+    content: "\e090";
+}
+
+.glyphicon-arrow-left:before {
+    content: "\e091";
+}
+
+.glyphicon-arrow-right:before {
+    content: "\e092";
+}
+
+.glyphicon-arrow-up:before {
+    content: "\e093";
+}
+
+.glyphicon-arrow-down:before {
+    content: "\e094";
+}
+
+.glyphicon-share-alt:before {
+    content: "\e095";
+}
+
+.glyphicon-resize-full:before {
+    content: "\e096";
+}
+
+.glyphicon-resize-small:before {
+    content: "\e097";
+}
+
+.glyphicon-exclamation-sign:before {
+    content: "\e101";
+}
+
+.glyphicon-gift:before {
+    content: "\e102";
+}
+
+.glyphicon-leaf:before {
+    content: "\e103";
+}
+
+.glyphicon-fire:before {
+    content: "\e104";
+}
+
+.glyphicon-eye-open:before {
+    content: "\e105";
+}
+
+.glyphicon-eye-close:before {
+    content: "\e106";
+}
+
+.glyphicon-warning-sign:before {
+    content: "\e107";
+}
+
+.glyphicon-plane:before {
+    content: "\e108";
+}
+
+.glyphicon-calendar:before {
+    content: "\e109";
+}
+
+.glyphicon-random:before {
+    content: "\e110";
+}
+
+.glyphicon-comment:before {
+    content: "\e111";
+}
+
+.glyphicon-magnet:before {
+    content: "\e112";
+}
+
+.glyphicon-chevron-up:before {
+    content: "\e113";
+}
+
+.glyphicon-chevron-down:before {
+    content: "\e114";
+}
+
+.glyphicon-retweet:before {
+    content: "\e115";
+}
+
+.glyphicon-shopping-cart:before {
+    content: "\e116";
+}
+
+.glyphicon-folder-close:before {
+    content: "\e117";
+}
+
+.glyphicon-folder-open:before {
+    content: "\e118";
+}
+
+.glyphicon-resize-vertical:before {
+    content: "\e119";
+}
+
+.glyphicon-resize-horizontal:before {
+    content: "\e120";
+}
+
+.glyphicon-hdd:before {
+    content: "\e121";
+}
+
+.glyphicon-bullhorn:before {
+    content: "\e122";
+}
+
+.glyphicon-bell:before {
+    content: "\e123";
+}
+
+.glyphicon-certificate:before {
+    content: "\e124";
+}
+
+.glyphicon-thumbs-up:before {
+    content: "\e125";
+}
+
+.glyphicon-thumbs-down:before {
+    content: "\e126";
+}
+
+.glyphicon-hand-right:before {
+    content: "\e127";
+}
+
+.glyphicon-hand-left:before {
+    content: "\e128";
+}
+
+.glyphicon-hand-up:before {
+    content: "\e129";
+}
+
+.glyphicon-hand-down:before {
+    content: "\e130";
+}
+
+.glyphicon-circle-arrow-right:before {
+    content: "\e131";
+}
+
+.glyphicon-circle-arrow-left:before {
+    content: "\e132";
+}
+
+.glyphicon-circle-arrow-up:before {
+    content: "\e133";
+}
+
+.glyphicon-circle-arrow-down:before {
+    content: "\e134";
+}
+
+.glyphicon-globe:before {
+    content: "\e135";
+}
+
+.glyphicon-wrench:before {
+    content: "\e136";
+}
+
+.glyphicon-tasks:before {
+    content: "\e137";
+}
+
+.glyphicon-filter:before {
+    content: "\e138";
+}
+
+.glyphicon-briefcase:before {
+    content: "\e139";
+}
+
+.glyphicon-fullscreen:before {
+    content: "\e140";
+}
+
+.glyphicon-dashboard:before {
+    content: "\e141";
+}
+
+.glyphicon-paperclip:before {
+    content: "\e142";
+}
+
+.glyphicon-heart-empty:before {
+    content: "\e143";
+}
+
+.glyphicon-link:before {
+    content: "\e144";
+}
+
+.glyphicon-phone:before {
+    content: "\e145";
+}
+
+.glyphicon-pushpin:before {
+    content: "\e146";
+}
+
+.glyphicon-usd:before {
+    content: "\e148";
+}
+
+.glyphicon-gbp:before {
+    content: "\e149";
+}
+
+.glyphicon-sort:before {
+    content: "\e150";
+}
+
+.glyphicon-sort-by-alphabet:before {
+    content: "\e151";
+}
+
+.glyphicon-sort-by-alphabet-alt:before {
+    content: "\e152";
+}
+
+.glyphicon-sort-by-order:before {
+    content: "\e153";
+}
+
+.glyphicon-sort-by-order-alt:before {
+    content: "\e154";
+}
+
+.glyphicon-sort-by-attributes:before {
+    content: "\e155";
+}
+
+.glyphicon-sort-by-attributes-alt:before {
+    content: "\e156";
+}
+
+.glyphicon-unchecked:before {
+    content: "\e157";
+}
+
+.glyphicon-expand:before {
+    content: "\e158";
+}
+
+.glyphicon-collapse-down:before {
+    content: "\e159";
+}
+
+.glyphicon-collapse-up:before {
+    content: "\e160";
+}
+
+.glyphicon-log-in:before {
+    content: "\e161";
+}
+
+.glyphicon-flash:before {
+    content: "\e162";
+}
+
+.glyphicon-log-out:before {
+    content: "\e163";
+}
+
+.glyphicon-new-window:before {
+    content: "\e164";
+}
+
+.glyphicon-record:before {
+    content: "\e165";
+}
+
+.glyphicon-save:before {
+    content: "\e166";
+}
+
+.glyphicon-open:before {
+    content: "\e167";
+}
+
+.glyphicon-saved:before {
+    content: "\e168";
+}
+
+.glyphicon-import:before {
+    content: "\e169";
+}
+
+.glyphicon-export:before {
+    content: "\e170";
+}
+
+.glyphicon-send:before {
+    content: "\e171";
+}
+
+.glyphicon-floppy-disk:before {
+    content: "\e172";
+}
+
+.glyphicon-floppy-saved:before {
+    content: "\e173";
+}
+
+.glyphicon-floppy-remove:before {
+    content: "\e174";
+}
+
+.glyphicon-floppy-save:before {
+    content: "\e175";
+}
+
+.glyphicon-floppy-open:before {
+    content: "\e176";
+}
+
+.glyphicon-credit-card:before {
+    content: "\e177";
+}
+
+.glyphicon-transfer:before {
+    content: "\e178";
+}
+
+.glyphicon-cutlery:before {
+    content: "\e179";
+}
+
+.glyphicon-header:before {
+    content: "\e180";
+}
+
+.glyphicon-compressed:before {
+    content: "\e181";
+}
+
+.glyphicon-earphone:before {
+    content: "\e182";
+}
+
+.glyphicon-phone-alt:before {
+    content: "\e183";
+}
+
+.glyphicon-tower:before {
+    content: "\e184";
+}
+
+.glyphicon-stats:before {
+    content: "\e185";
+}
+
+.glyphicon-sd-video:before {
+    content: "\e186";
+}
+
+.glyphicon-hd-video:before {
+    content: "\e187";
+}
+
+.glyphicon-subtitles:before {
+    content: "\e188";
+}
+
+.glyphicon-sound-stereo:before {
+    content: "\e189";
+}
+
+.glyphicon-sound-dolby:before {
+    content: "\e190";
+}
+
+.glyphicon-sound-5-1:before {
+    content: "\e191";
+}
+
+.glyphicon-sound-6-1:before {
+    content: "\e192";
+}
+
+.glyphicon-sound-7-1:before {
+    content: "\e193";
+}
+
+.glyphicon-copyright-mark:before {
+    content: "\e194";
+}
+
+.glyphicon-registration-mark:before {
+    content: "\e195";
+}
+
+.glyphicon-cloud-download:before {
+    content: "\e197";
+}
+
+.glyphicon-cloud-upload:before {
+    content: "\e198";
+}
+
+.glyphicon-tree-conifer:before {
+    content: "\e199";
+}
+
+.glyphicon-tree-deciduous:before {
+    content: "\e200";
+}
+
+* {
+    -webkit-box-sizing: border-box;
+    -moz-box-sizing: border-box;
+    box-sizing: border-box;
+}
+
+*:before,
+*:after {
+    -webkit-box-sizing: border-box;
+    -moz-box-sizing: border-box;
+    box-sizing: border-box;
+}
+
+html {
+    font-size: 10px;
+
+    -webkit-tap-highlight-color: rgba(0, 0, 0, 0);
+}
+
+body {
+    font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
+    font-size: 14px;
+    line-height: 1.42857143;
+    color: #000;
+    background-color: #fff;
+}
+
+input,
+button,
+select,
+textarea {
+    font-family: inherit;
+    font-size: inherit;
+    line-height: inherit;
+}
+
+a {
+    color: #3071a9;
+    text-decoration: none;
+}
+
+a:hover,
+a:focus {
+    color: #2a6496;
+    text-decoration: underline;
+}
+
+a:focus {
+    outline: thin dotted;
+    outline: 5px auto -webkit-focus-ring-color;
+    outline-offset: -2px;
+}
+
+figure {
+    margin: 0;
+}
+
+img {
+    vertical-align: middle;
+}
+
+.img-responsive,
+.thumbnail>img,
+.thumbnail a>img,
+.carousel-inner>.item>img,
+.carousel-inner>.item>a>img {
+    display: block;
+    max-width: 100%;
+    height: auto;
+}
+
+.img-rounded {
+    border-radius: 6px;
+}
+
+.img-thumbnail {
+    display: inline-block;
+    max-width: 100%;
+    height: auto;
+    padding: 4px;
+    line-height: 1.42857143;
+    background-color: #fff;
+    border: 1px solid #ddd;
+    border-radius: 4px;
+    -webkit-transition: all .2s ease-in-out;
+    -o-transition: all .2s ease-in-out;
+    transition: all .2s ease-in-out;
+}
+
+.img-circle {
+    border-radius: 50%;
+}
+
+hr {
+    margin-top: 20px;
+    margin-bottom: 20px;
+    border: 0;
+    border-top: 1px solid #eee;
+}
+
+.sr-only {
+    position: absolute;
+    width: 1px;
+    height: 1px;
+    padding: 0;
+    margin: -1px;
+    overflow: hidden;
+    clip: rect(0, 0, 0, 0);
+    border: 0;
+}
+
+.sr-only-focusable:active,
+.sr-only-focusable:focus {
+    position: static;
+    width: auto;
+    height: auto;
+    margin: 0;
+    overflow: visible;
+    clip: auto;
+}
+
+h1,
+h2,
+h3,
+h4,
+h5,
+h6,
+.h1,
+.h2,
+.h3,
+.h4,
+.h5,
+.h6 {
+    font-family: inherit;
+    font-weight: 500;
+    line-height: 1.1;
+    color: inherit;
+}
+
+h1 small,
+h2 small,
+h3 small,
+h4 small,
+h5 small,
+h6 small,
+.h1 small,
+.h2 small,
+.h3 small,
+.h4 small,
+.h5 small,
+.h6 small,
+h1 .small,
+h2 .small,
+h3 .small,
+h4 .small,
+h5 .small,
+h6 .small,
+.h1 .small,
+.h2 .small,
+.h3 .small,
+.h4 .small,
+.h5 .small,
+.h6 .small {
+    font-weight: normal;
+    line-height: 1;
+    color: #777;
+}
+
+h1,
+.h1,
+h2,
+.h2,
+h3,
+.h3 {
+    margin-top: 10px;
+    margin-bottom: 10px;
+}
+
+h1 small,
+.h1 small,
+h2 small,
+.h2 small,
+h3 small,
+.h3 small,
+h1 .small,
+.h1 .small,
+h2 .small,
+.h2 .small,
+h3 .small,
+.h3 .small {
+    font-size: 65%;
+}
+
+h4,
+.h4,
+h5,
+.h5,
+h6,
+.h6 {
+    margin-top: 10px;
+    margin-bottom: 10px;
+}
+
+h4 small,
+.h4 small,
+h5 small,
+.h5 small,
+h6 small,
+.h6 small,
+h4 .small,
+.h4 .small,
+h5 .small,
+.h5 .small,
+h6 .small,
+.h6 .small {
+    font-size: 75%;
+}
+
+h1,
+.h1 {
+    font-size: 30px;
+}
+
+h2,
+.h2 {
+    font-size: 24px;
+}
+
+h3,
+.h3 {
+    font-size: 18px;
+}
+
+h4,
+.h4 {
+    font-size: 14px;
+}
+
+h5,
+.h5 {
+    font-size: 12px;
+}
+
+h6,
+.h6 {
+    font-size: 10px;
+}
+
+p {
+    margin: 0 0 10px;
+}
+
+.lead {
+    margin-bottom: 20px;
+    font-size: 16px;
+    font-weight: 300;
+    line-height: 1.4;
+}
+
+@media (min-width: 768px) {
+    .lead {
+        font-size: 21px;
+    }
+}
+
+small,
+.small {
+    font-size: 85%;
+}
+
+mark,
+.mark {
+    padding: .2em;
+    background-color: #fcf8e3;
+}
+
+.text-left {
+    text-align: left;
+}
+
+.text-right {
+    text-align: right;
+}
+
+.text-center {
+    text-align: center;
+}
+
+.text-justify {
+    text-align: justify;
+}
+
+.text-nowrap {
+    white-space: nowrap;
+}
+
+.text-lowercase {
+    text-transform: lowercase;
+}
+
+.text-uppercase {
+    text-transform: uppercase;
+}
+
+.text-capitalize {
+    text-transform: capitalize;
+}
+
+.text-muted {
+    color: #777;
+}
+
+.text-primary {
+    color: #428bca;
+}
+
+a.text-primary:hover {
+    color: #3071a9;
+}
+
+.text-success {
+    color: #3c763d;
+}
+
+a.text-success:hover {
+    color: #2b542c;
+}
+
+.text-info {
+    color: #31708f;
+}
+
+a.text-info:hover {
+    color: #245269;
+}
+
+.text-warning {
+    color: #8a6d3b;
+}
+
+a.text-warning:hover {
+    color: #66512c;
+}
+
+.text-danger {
+    color: #a94442;
+}
+
+a.text-danger:hover {
+    color: #843534;
+}
+
+.bg-primary {
+    color: #fff;
+    background-color: #428bca;
+}
+
+a.bg-primary:hover {
+    background-color: #3071a9;
+}
+
+.bg-success {
+    background-color: #dff0d8;
+}
+
+a.bg-success:hover {
+    background-color: #c1e2b3;
+}
+
+.bg-info {
+    background-color: #d9edf7;
+}
+
+a.bg-info:hover {
+    background-color: #afd9ee;
+}
+
+.bg-warning {
+    background-color: #fcf8e3;
+}
+
+a.bg-warning:hover {
+    background-color: #f7ecb5;
+}
+
+.bg-danger {
+    background-color: #f2dede;
+}
+
+a.bg-danger:hover {
+    background-color: #e4b9b9;
+}
+
+.page-header {
+    padding-bottom: 9px;
+    margin: 10px 0 10px;
+    border-bottom: 1px solid #eee;
+}
+
+ul,
+ol {
+    margin-top: 0;
+    margin-bottom: 10px;
+}
+
+ul ul,
+ol ul,
+ul ol,
+ol ol {
+    margin-bottom: 0;
+}
+
+.list-unstyled {
+    padding-left: 0;
+    list-style: none;
+}
+
+.list-inline {
+    padding-left: 0;
+    margin-left: -5px;
+    list-style: none;
+}
+
+.list-inline>li {
+    display: inline-block;
+    padding-right: 5px;
+    padding-left: 5px;
+}
+
+dl {
+    margin-top: 0;
+    margin-bottom: 20px;
+}
+
+dt,
+dd {
+    line-height: 1.42857143;
+}
+
+dt {
+    font-weight: bold;
+}
+
+dd {
+    margin-left: 0;
+}
+
+@media (min-width: 768px) {
+    .dl-horizontal dt {
+        float: left;
+        width: 160px;
+        overflow: hidden;
+        clear: left;
+        text-align: right;
+        text-overflow: ellipsis;
+        white-space: nowrap;
+    }
+
+    .dl-horizontal dd {
+        margin-left: 180px;
+    }
+}
+
+abbr[title],
+abbr[data-original-title] {
+    cursor: help;
+    border-bottom: 1px dotted #777;
+}
+
+.initialism {
+    font-size: 90%;
+    text-transform: uppercase;
+}
+
+blockquote {
+    padding: 10px 20px;
+    margin: 0 0 20px;
+    font-size: 17.5px;
+    border-left: 5px solid #eee;
+}
+
+blockquote p:last-child,
+blockquote ul:last-child,
+blockquote ol:last-child {
+    margin-bottom: 0;
+}
+
+blockquote footer,
+blockquote small,
+blockquote .small {
+    display: block;
+    font-size: 80%;
+    line-height: 1.42857143;
+    color: #777;
+}
+
+blockquote footer:before,
+blockquote small:before,
+blockquote .small:before {
+    content: '\2014 \00A0';
+}
+
+.blockquote-reverse,
+blockquote.pull-right {
+    padding-right: 15px;
+    padding-left: 0;
+    text-align: right;
+    border-right: 5px solid #eee;
+    border-left: 0;
+}
+
+.blockquote-reverse footer:before,
+blockquote.pull-right footer:before,
+.blockquote-reverse small:before,
+blockquote.pull-right small:before,
+.blockquote-reverse .small:before,
+blockquote.pull-right .small:before {
+    content: '';
+}
+
+.blockquote-reverse footer:after,
+blockquote.pull-right footer:after,
+.blockquote-reverse small:after,
+blockquote.pull-right small:after,
+.blockquote-reverse .small:after,
+blockquote.pull-right .small:after {
+    content: '\00A0 \2014';
+}
+
+address {
+    margin-bottom: 20px;
+    font-style: normal;
+    line-height: 1.42857143;
+}
+
+code,
+kbd,
+pre,
+samp {
+    font-family: Menlo, Monaco, Consolas, "Courier New", monospace;
+}
+
+code {
+    padding: 2px 4px;
+    font-size: 90%;
+    color: #c7254e;
+    background-color: #f9f2f4;
+    border-radius: 4px;
+}
+
+kbd {
+    padding: 2px 4px;
+    font-size: 90%;
+    color: #fff;
+    background-color: #333;
+    border-radius: 3px;
+    -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .25);
+    box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .25);
+}
+
+kbd kbd {
+    padding: 0;
+    font-size: 100%;
+    font-weight: bold;
+    -webkit-box-shadow: none;
+    box-shadow: none;
+}
+
+pre {
+    display: block;
+    padding: 9.5px;
+    margin: 0 0 10px;
+    font-size: 13px;
+    line-height: 1.42857143;
+    color: #333;
+    word-break: break-all;
+    word-wrap: break-word;
+    background-color: #f5f5f5;
+    border: 1px solid #ccc;
+    border-radius: 4px;
+}
+
+pre code {
+    padding: 0;
+    font-size: inherit;
+    color: inherit;
+    white-space: pre-wrap;
+    background-color: transparent;
+    border-radius: 0;
+}
+
+.pre-scrollable {
+    max-height: 340px;
+    overflow-y: scroll;
+}
+
+.container {
+    padding-right: 15px;
+    padding-left: 15px;
+}
+
+/*
+@media (min-width: 768px) {
+  .container {
+    width: 750px;
+  }
+}
+@media (min-width: 992px) {
+  .container {
+    width: 970px;
+  }
+}
+@media (min-width: 1200px) {
+  .container {
+    width: 1170px;
+  }
+}*/
+
+.container-fluid {
+    padding-right: 15px;
+    padding-left: 15px;
+    margin-right: auto;
+    margin-left: auto;
+}
+
+.row {
+    margin-right: -15px;
+    margin-left: -15px;
+}
+
+.col-xs-1,
+.col-sm-1,
+.col-md-1,
+.col-lg-1,
+.col-xs-2,
+.col-sm-2,
+.col-md-2,
+.col-lg-2,
+.col-xs-3,
+.col-sm-3,
+.col-md-3,
+.col-lg-3,
+.col-xs-4,
+.col-sm-4,
+.col-md-4,
+.col-lg-4,
+.col-xs-5,
+.col-sm-5,
+.col-md-5,
+.col-lg-5,
+.col-xs-6,
+.col-sm-6,
+.col-md-6,
+.col-lg-6,
+.col-xs-7,
+.col-sm-7,
+.col-md-7,
+.col-lg-7,
+.col-xs-8,
+.col-sm-8,
+.col-md-8,
+.col-lg-8,
+.col-xs-9,
+.col-sm-9,
+.col-md-9,
+.col-lg-9,
+.col-xs-10,
+.col-sm-10,
+.col-md-10,
+.col-lg-10,
+.col-xs-11,
+.col-sm-11,
+.col-md-11,
+.col-lg-11,
+.col-xs-12,
+.col-sm-12,
+.col-md-12,
+.col-lg-12 {
+    position: relative;
+    min-height: 1px;
+    padding-right: 15px;
+    padding-left: 15px;
+}
+
+.col-xs-1,
+.col-xs-2,
+.col-xs-3,
+.col-xs-4,
+.col-xs-5,
+.col-xs-6,
+.col-xs-7,
+.col-xs-8,
+.col-xs-9,
+.col-xs-10,
+.col-xs-11,
+.col-xs-12 {
+    float: left;
+}
+
+.col-xs-12 {
+    width: 100%;
+}
+
+.col-xs-11 {
+    width: 91.66666667%;
+}
+
+.col-xs-10 {
+    width: 83.33333333%;
+}
+
+.col-xs-9 {
+    width: 75%;
+}
+
+.col-xs-8 {
+    width: 66.66666667%;
+}
+
+.col-xs-7 {
+    width: 58.33333333%;
+}
+
+.col-xs-6 {
+    width: 50%;
+}
+
+.col-xs-5 {
+    width: 41.66666667%;
+}
+
+.col-xs-4 {
+    width: 33.33333333%;
+}
+
+.col-xs-3 {
+    width: 25%;
+}
+
+.col-xs-2 {
+    width: 16.66666667%;
+}
+
+.col-xs-1 {
+    width: 8.33333333%;
+}
+
+.col-xs-pull-12 {
+    right: 100%;
+}
+
+.col-xs-pull-11 {
+    right: 91.66666667%;
+}
+
+.col-xs-pull-10 {
+    right: 83.33333333%;
+}
+
+.col-xs-pull-9 {
+    right: 75%;
+}
+
+.col-xs-pull-8 {
+    right: 66.66666667%;
+}
+
+.col-xs-pull-7 {
+    right: 58.33333333%;
+}
+
+.col-xs-pull-6 {
+    right: 50%;
+}
+
+.col-xs-pull-5 {
+    right: 41.66666667%;
+}
+
+.col-xs-pull-4 {
+    right: 33.33333333%;
+}
+
+.col-xs-pull-3 {
+    right: 25%;
+}
+
+.col-xs-pull-2 {
+    right: 16.66666667%;
+}
+
+.col-xs-pull-1 {
+    right: 8.33333333%;
+}
+
+.col-xs-pull-0 {
+    right: auto;
+}
+
+.col-xs-push-12 {
+    left: 100%;
+}
+
+.col-xs-push-11 {
+    left: 91.66666667%;
+}
+
+.col-xs-push-10 {
+    left: 83.33333333%;
+}
+
+.col-xs-push-9 {
+    left: 75%;
+}
+
+.col-xs-push-8 {
+    left: 66.66666667%;
+}
+
+.col-xs-push-7 {
+    left: 58.33333333%;
+}
+
+.col-xs-push-6 {
+    left: 50%;
+}
+
+.col-xs-push-5 {
+    left: 41.66666667%;
+}
+
+.col-xs-push-4 {
+    left: 33.33333333%;
+}
+
+.col-xs-push-3 {
+    left: 25%;
+}
+
+.col-xs-push-2 {
+    left: 16.66666667%;
+}
+
+.col-xs-push-1 {
+    left: 8.33333333%;
+}
+
+.col-xs-push-0 {
+    left: auto;
+}
+
+.col-xs-offset-12 {
+    margin-left: 100%;
+}
+
+.col-xs-offset-11 {
+    margin-left: 91.66666667%;
+}
+
+.col-xs-offset-10 {
+    margin-left: 83.33333333%;
+}
+
+.col-xs-offset-9 {
+    margin-left: 75%;
+}
+
+.col-xs-offset-8 {
+    margin-left: 66.66666667%;
+}
+
+.col-xs-offset-7 {
+    margin-left: 58.33333333%;
+}
+
+.col-xs-offset-6 {
+    margin-left: 50%;
+}
+
+.col-xs-offset-5 {
+    margin-left: 41.66666667%;
+}
+
+.col-xs-offset-4 {
+    margin-left: 33.33333333%;
+}
+
+.col-xs-offset-3 {
+    margin-left: 25%;
+}
+
+.col-xs-offset-2 {
+    margin-left: 16.66666667%;
+}
+
+.col-xs-offset-1 {
+    margin-left: 8.33333333%;
+}
+
+.col-xs-offset-0 {
+    margin-left: 0;
+}
+
+/*
+@media (min-width: 768px) {
+  .col-sm-1, .col-sm-2, .col-sm-3, .col-sm-4, .col-sm-5, .col-sm-6, .col-sm-7, .col-sm-8, .col-sm-9, .col-sm-10, .col-sm-11, .col-sm-12 {
+    float: left;
+  }
+  .col-sm-12 {
+    width: 100%;
+  }
+  .col-sm-11 {
+    width: 91.66666667%;
+  }
+  .col-sm-10 {
+    width: 83.33333333%;
+  }
+  .col-sm-9 {
+    width: 75%;
+  }
+  .col-sm-8 {
+    width: 66.66666667%;
+  }
+  .col-sm-7 {
+    width: 58.33333333%;
+  }
+  .col-sm-6 {
+    width: 50%;
+  }
+  .col-sm-5 {
+    width: 41.66666667%;
+  }
+  .col-sm-4 {
+    width: 33.33333333%;
+  }
+  .col-sm-3 {
+    width: 25%;
+  }
+  .col-sm-2 {
+    width: 16.66666667%;
+  }
+  .col-sm-1 {
+    width: 8.33333333%;
+  }
+  .col-sm-pull-12 {
+    right: 100%;
+  }
+  .col-sm-pull-11 {
+    right: 91.66666667%;
+  }
+  .col-sm-pull-10 {
+    right: 83.33333333%;
+  }
+  .col-sm-pull-9 {
+    right: 75%;
+  }
+  .col-sm-pull-8 {
+    right: 66.66666667%;
+  }
+  .col-sm-pull-7 {
+    right: 58.33333333%;
+  }
+  .col-sm-pull-6 {
+    right: 50%;
+  }
+  .col-sm-pull-5 {
+    right: 41.66666667%;
+  }
+  .col-sm-pull-4 {
+    right: 33.33333333%;
+  }
+  .col-sm-pull-3 {
+    right: 25%;
+  }
+  .col-sm-pull-2 {
+    right: 16.66666667%;
+  }
+  .col-sm-pull-1 {
+    right: 8.33333333%;
+  }
+  .col-sm-pull-0 {
+    right: auto;
+  }
+  .col-sm-push-12 {
+    left: 100%;
+  }
+  .col-sm-push-11 {
+    left: 91.66666667%;
+  }
+  .col-sm-push-10 {
+    left: 83.33333333%;
+  }
+  .col-sm-push-9 {
+    left: 75%;
+  }
+  .col-sm-push-8 {
+    left: 66.66666667%;
+  }
+  .col-sm-push-7 {
+    left: 58.33333333%;
+  }
+  .col-sm-push-6 {
+    left: 50%;
+  }
+  .col-sm-push-5 {
+    left: 41.66666667%;
+  }
+  .col-sm-push-4 {
+    left: 33.33333333%;
+  }
+  .col-sm-push-3 {
+    left: 25%;
+  }
+  .col-sm-push-2 {
+    left: 16.66666667%;
+  }
+  .col-sm-push-1 {
+    left: 8.33333333%;
+  }
+  .col-sm-push-0 {
+    left: auto;
+  }
+  .col-sm-offset-12 {
+    margin-left: 100%;
+  }
+  .col-sm-offset-11 {
+    margin-left: 91.66666667%;
+  }
+  .col-sm-offset-10 {
+    margin-left: 83.33333333%;
+  }
+  .col-sm-offset-9 {
+    margin-left: 75%;
+  }
+  .col-sm-offset-8 {
+    margin-left: 66.66666667%;
+  }
+  .col-sm-offset-7 {
+    margin-left: 58.33333333%;
+  }
+  .col-sm-offset-6 {
+    margin-left: 50%;
+  }
+  .col-sm-offset-5 {
+    margin-left: 41.66666667%;
+  }
+  .col-sm-offset-4 {
+    margin-left: 33.33333333%;
+  }
+  .col-sm-offset-3 {
+    margin-left: 25%;
+  }
+  .col-sm-offset-2 {
+    margin-left: 16.66666667%;
+  }
+  .col-sm-offset-1 {
+    margin-left: 8.33333333%;
+  }
+  .col-sm-offset-0 {
+    margin-left: 0;
+  }
+}
+@media (min-width: 992px) {
+  .col-md-1, .col-md-2, .col-md-3, .col-md-4, .col-md-5, .col-md-6, .col-md-7, .col-md-8, .col-md-9, .col-md-10, .col-md-11, .col-md-12 {
+    float: left;
+  }
+  .col-md-12 {
+    width: 100%;
+  }
+  .col-md-11 {
+    width: 91.66666667%;
+  }
+  .col-md-10 {
+    width: 83.33333333%;
+  }
+  .col-md-9 {
+    width: 75%;
+  }
+  .col-md-8 {
+    width: 66.66666667%;
+  }
+  .col-md-7 {
+    width: 58.33333333%;
+  }
+  .col-md-6 {
+    width: 50%;
+  }
+  .col-md-5 {
+    width: 41.66666667%;
+  }
+  .col-md-4 {
+    width: 33.33333333%;
+  }
+  .col-md-3 {
+    width: 25%;
+  }
+  .col-md-2 {
+    width: 16.66666667%;
+  }
+  .col-md-1 {
+    width: 8.33333333%;
+  }
+  .col-md-pull-12 {
+    right: 100%;
+  }
+  .col-md-pull-11 {
+    right: 91.66666667%;
+  }
+  .col-md-pull-10 {
+    right: 83.33333333%;
+  }
+  .col-md-pull-9 {
+    right: 75%;
+  }
+  .col-md-pull-8 {
+    right: 66.66666667%;
+  }
+  .col-md-pull-7 {
+    right: 58.33333333%;
+  }
+  .col-md-pull-6 {
+    right: 50%;
+  }
+  .col-md-pull-5 {
+    right: 41.66666667%;
+  }
+  .col-md-pull-4 {
+    right: 33.33333333%;
+  }
+  .col-md-pull-3 {
+    right: 25%;
+  }
+  .col-md-pull-2 {
+    right: 16.66666667%;
+  }
+  .col-md-pull-1 {
+    right: 8.33333333%;
+  }
+  .col-md-pull-0 {
+    right: auto;
+  }
+  .col-md-push-12 {
+    left: 100%;
+  }
+  .col-md-push-11 {
+    left: 91.66666667%;
+  }
+  .col-md-push-10 {
+    left: 83.33333333%;
+  }
+  .col-md-push-9 {
+    left: 75%;
+  }
+  .col-md-push-8 {
+    left: 66.66666667%;
+  }
+  .col-md-push-7 {
+    left: 58.33333333%;
+  }
+  .col-md-push-6 {
+    left: 50%;
+  }
+  .col-md-push-5 {
+    left: 41.66666667%;
+  }
+  .col-md-push-4 {
+    left: 33.33333333%;
+  }
+  .col-md-push-3 {
+    left: 25%;
+  }
+  .col-md-push-2 {
+    left: 16.66666667%;
+  }
+  .col-md-push-1 {
+    left: 8.33333333%;
+  }
+  .col-md-push-0 {
+    left: auto;
+  }
+  .col-md-offset-12 {
+    margin-left: 100%;
+  }
+  .col-md-offset-11 {
+    margin-left: 91.66666667%;
+  }
+  .col-md-offset-10 {
+    margin-left: 83.33333333%;
+  }
+  .col-md-offset-9 {
+    margin-left: 75%;
+  }
+  .col-md-offset-8 {
+    margin-left: 66.66666667%;
+  }
+  .col-md-offset-7 {
+    margin-left: 58.33333333%;
+  }
+  .col-md-offset-6 {
+    margin-left: 50%;
+  }
+  .col-md-offset-5 {
+    margin-left: 41.66666667%;
+  }
+  .col-md-offset-4 {
+    margin-left: 33.33333333%;
+  }
+  .col-md-offset-3 {
+    margin-left: 25%;
+  }
+  .col-md-offset-2 {
+    margin-left: 16.66666667%;
+  }
+  .col-md-offset-1 {
+    margin-left: 8.33333333%;
+  }
+  .col-md-offset-0 {
+    margin-left: 0;
+  }
+}
+@media (min-width: 1200px) {
+  .col-lg-1, .col-lg-2, .col-lg-3, .col-lg-4, .col-lg-5, .col-lg-6, .col-lg-7, .col-lg-8, .col-lg-9, .col-lg-10, .col-lg-11, .col-lg-12 {
+    float: left;
+  }
+  .col-lg-12 {
+    width: 100%;
+  }
+  .col-lg-11 {
+    width: 91.66666667%;
+  }
+  .col-lg-10 {
+    width: 83.33333333%;
+  }
+  .col-lg-9 {
+    width: 75%;
+  }
+  .col-lg-8 {
+    width: 66.66666667%;
+  }
+  .col-lg-7 {
+    width: 58.33333333%;
+  }
+  .col-lg-6 {
+    width: 50%;
+  }
+  .col-lg-5 {
+    width: 41.66666667%;
+  }
+  .col-lg-4 {
+    width: 33.33333333%;
+  }
+  .col-lg-3 {
+    width: 25%;
+  }
+  .col-lg-2 {
+    width: 16.66666667%;
+  }
+  .col-lg-1 {
+    width: 8.33333333%;
+  }
+  .col-lg-pull-12 {
+    right: 100%;
+  }
+  .col-lg-pull-11 {
+    right: 91.66666667%;
+  }
+  .col-lg-pull-10 {
+    right: 83.33333333%;
+  }
+  .col-lg-pull-9 {
+    right: 75%;
+  }
+  .col-lg-pull-8 {
+    right: 66.66666667%;
+  }
+  .col-lg-pull-7 {
+    right: 58.33333333%;
+  }
+  .col-lg-pull-6 {
+    right: 50%;
+  }
+  .col-lg-pull-5 {
+    right: 41.66666667%;
+  }
+  .col-lg-pull-4 {
+    right: 33.33333333%;
+  }
+  .col-lg-pull-3 {
+    right: 25%;
+  }
+  .col-lg-pull-2 {
+    right: 16.66666667%;
+  }
+  .col-lg-pull-1 {
+    right: 8.33333333%;
+  }
+  .col-lg-pull-0 {
+    right: auto;
+  }
+  .col-lg-push-12 {
+    left: 100%;
+  }
+  .col-lg-push-11 {
+    left: 91.66666667%;
+  }
+  .col-lg-push-10 {
+    left: 83.33333333%;
+  }
+  .col-lg-push-9 {
+    left: 75%;
+  }
+  .col-lg-push-8 {
+    left: 66.66666667%;
+  }
+  .col-lg-push-7 {
+    left: 58.33333333%;
+  }
+  .col-lg-push-6 {
+    left: 50%;
+  }
+  .col-lg-push-5 {
+    left: 41.66666667%;
+  }
+  .col-lg-push-4 {
+    left: 33.33333333%;
+  }
+  .col-lg-push-3 {
+    left: 25%;
+  }
+  .col-lg-push-2 {
+    left: 16.66666667%;
+  }
+  .col-lg-push-1 {
+    left: 8.33333333%;
+  }
+  .col-lg-push-0 {
+    left: auto;
+  }
+  .col-lg-offset-12 {
+    margin-left: 100%;
+  }
+  .col-lg-offset-11 {
+    margin-left: 91.66666667%;
+  }
+  .col-lg-offset-10 {
+    margin-left: 83.33333333%;
+  }
+  .col-lg-offset-9 {
+    margin-left: 75%;
+  }
+  .col-lg-offset-8 {
+    margin-left: 66.66666667%;
+  }
+  .col-lg-offset-7 {
+    margin-left: 58.33333333%;
+  }
+  .col-lg-offset-6 {
+    margin-left: 50%;
+  }
+  .col-lg-offset-5 {
+    margin-left: 41.66666667%;
+  }
+  .col-lg-offset-4 {
+    margin-left: 33.33333333%;
+  }
+  .col-lg-offset-3 {
+    margin-left: 25%;
+  }
+  .col-lg-offset-2 {
+    margin-left: 16.66666667%;
+  }
+  .col-lg-offset-1 {
+    margin-left: 8.33333333%;
+  }
+  .col-lg-offset-0 {
+    margin-left: 0;
+  }
+}
+*/
+
+table {
+    background-color: transparent;
+}
+
+caption {
+    padding-top: 8px;
+    padding-bottom: 8px;
+    color: #777;
+    text-align: left;
+}
+
+th {
+    text-align: left;
+}
+
+.table {
+    //width: 100%;
+    //max-width: 100%;
+    margin-bottom: 20px;
+}
+
+.table>thead>tr>th,
+.table>tbody>tr>th,
+.table>tfoot>tr>th,
+.table>thead>tr>td,
+.table>tbody>tr>td,
+.table>tfoot>tr>td {
+    padding: 8px;
+    line-height: 1.42857143;
+    vertical-align: top;
+    border-top: 1px solid #ddd;
+}
+
+.table>thead>tr>th {
+    vertical-align: middle;
+    border-bottom: 2px solid #ddd;
+}
+
+.table>caption+thead>tr:first-child>th,
+.table>colgroup+thead>tr:first-child>th,
+.table>thead:first-child>tr:first-child>th,
+.table>caption+thead>tr:first-child>td,
+.table>colgroup+thead>tr:first-child>td,
+.table>thead:first-child>tr:first-child>td {
+    border-top: 0;
+}
+
+.table>tbody+tbody {
+    border-top: 2px solid #ddd;
+}
+
+.table .table {
+    background-color: #fff;
+}
+
+.table-condensed>thead>tr>th,
+.table-condensed>tbody>tr>th,
+.table-condensed>tfoot>tr>th,
+.table-condensed>thead>tr>td,
+.table-condensed>tbody>tr>td,
+.table-condensed>tfoot>tr>td {
+    padding: 5px;
+}
+
+.table-bordered {
+    border: 1px solid #000;
+}
+
+.table-bordered>thead>tr>th,
+.table-bordered>tbody>tr>th,
+.table-bordered>tfoot>tr>th,
+.table-bordered>thead>tr>td,
+.table-bordered>tbody>tr>td,
+.table-bordered>tfoot>tr>td {
+    border: 1px solid #000;
+}
+
+.table-bordered>thead>tr>th,
+.table-bordered>thead>tr>td {
+    border-bottom-width: 2px;
+}
+
+.table-striped>tbody>tr:nth-child(odd) {
+    background-color: #f9f9f9;
+}
+
+.table-hover>tbody>tr:hover {
+    background-color: #f5f5f5;
+}
+
+table col[class*="col-"] {
+    position: static;
+    display: table-column;
+    float: none;
+}
+
+table td[class*="col-"],
+table th[class*="col-"] {
+    position: static;
+    display: table-cell;
+    float: none;
+}
+
+.table>thead>tr>td.active,
+.table>tbody>tr>td.active,
+.table>tfoot>tr>td.active,
+.table>thead>tr>th.active,
+.table>tbody>tr>th.active,
+.table>tfoot>tr>th.active,
+.table>thead>tr.active>td,
+.table>tbody>tr.active>td,
+.table>tfoot>tr.active>td,
+.table>thead>tr.active>th,
+.table>tbody>tr.active>th,
+.table>tfoot>tr.active>th {
+    background-color: #f5f5f5;
+}
+
+.table-hover>tbody>tr>td.active:hover,
+.table-hover>tbody>tr>th.active:hover,
+.table-hover>tbody>tr.active:hover>td,
+.table-hover>tbody>tr:hover>.active,
+.table-hover>tbody>tr.active:hover>th {
+    background-color: #e8e8e8;
+}
+
+.table>thead>tr>td.success,
+.table>tbody>tr>td.success,
+.table>tfoot>tr>td.success,
+.table>thead>tr>th.success,
+.table>tbody>tr>th.success,
+.table>tfoot>tr>th.success,
+.table>thead>tr.success>td,
+.table>tbody>tr.success>td,
+.table>tfoot>tr.success>td,
+.table>thead>tr.success>th,
+.table>tbody>tr.success>th,
+.table>tfoot>tr.success>th {
+    background-color: #dff0d8;
+}
+
+.table-hover>tbody>tr>td.success:hover,
+.table-hover>tbody>tr>th.success:hover,
+.table-hover>tbody>tr.success:hover>td,
+.table-hover>tbody>tr:hover>.success,
+.table-hover>tbody>tr.success:hover>th {
+    background-color: #d0e9c6;
+}
+
+.table>thead>tr>td.info,
+.table>tbody>tr>td.info,
+.table>tfoot>tr>td.info,
+.table>thead>tr>th.info,
+.table>tbody>tr>th.info,
+.table>tfoot>tr>th.info,
+.table>thead>tr.info>td,
+.table>tbody>tr.info>td,
+.table>tfoot>tr.info>td,
+.table>thead>tr.info>th,
+.table>tbody>tr.info>th,
+.table>tfoot>tr.info>th {
+    background-color: #d9edf7;
+}
+
+.table-hover>tbody>tr>td.info:hover,
+.table-hover>tbody>tr>th.info:hover,
+.table-hover>tbody>tr.info:hover>td,
+.table-hover>tbody>tr:hover>.info,
+.table-hover>tbody>tr.info:hover>th {
+    background-color: #c4e3f3;
+}
+
+.table>thead>tr>td.warning,
+.table>tbody>tr>td.warning,
+.table>tfoot>tr>td.warning,
+.table>thead>tr>th.warning,
+.table>tbody>tr>th.warning,
+.table>tfoot>tr>th.warning,
+.table>thead>tr.warning>td,
+.table>tbody>tr.warning>td,
+.table>tfoot>tr.warning>td,
+.table>thead>tr.warning>th,
+.table>tbody>tr.warning>th,
+.table>tfoot>tr.warning>th {
+    background-color: #fcf8e3;
+}
+
+.table-hover>tbody>tr>td.warning:hover,
+.table-hover>tbody>tr>th.warning:hover,
+.table-hover>tbody>tr.warning:hover>td,
+.table-hover>tbody>tr:hover>.warning,
+.table-hover>tbody>tr.warning:hover>th {
+    background-color: #faf2cc;
+}
+
+.table>thead>tr>td.danger,
+.table>tbody>tr>td.danger,
+.table>tfoot>tr>td.danger,
+.table>thead>tr>th.danger,
+.table>tbody>tr>th.danger,
+.table>tfoot>tr>th.danger,
+.table>thead>tr.danger>td,
+.table>tbody>tr.danger>td,
+.table>tfoot>tr.danger>td,
+.table>thead>tr.danger>th,
+.table>tbody>tr.danger>th,
+.table>tfoot>tr.danger>th {
+    background-color: #f2dede;
+}
+
+.table-hover>tbody>tr>td.danger:hover,
+.table-hover>tbody>tr>th.danger:hover,
+.table-hover>tbody>tr.danger:hover>td,
+.table-hover>tbody>tr:hover>.danger,
+.table-hover>tbody>tr.danger:hover>th {
+    background-color: #ebcccc;
+}
+
+.table-responsive {
+    min-height: .01%;
+    overflow-x: auto;
+}
+
+@media screen and (max-width: 767px) {
+    .table-responsive {
+        width: 100%;
+        margin-bottom: 15px;
+        overflow-y: hidden;
+        -ms-overflow-style: -ms-autohiding-scrollbar;
+        border: 1px solid #ddd;
+    }
+
+    .table-responsive>.table {
+        margin-bottom: 0;
+    }
+
+    .table-responsive>.table>thead>tr>th,
+    .table-responsive>.table>tbody>tr>th,
+    .table-responsive>.table>tfoot>tr>th,
+    .table-responsive>.table>thead>tr>td,
+    .table-responsive>.table>tbody>tr>td,
+    .table-responsive>.table>tfoot>tr>td {
+        white-space: nowrap;
+    }
+
+    .table-responsive>.table-bordered {
+        border: 0;
+    }
+
+    .table-responsive>.table-bordered>thead>tr>th:first-child,
+    .table-responsive>.table-bordered>tbody>tr>th:first-child,
+    .table-responsive>.table-bordered>tfoot>tr>th:first-child,
+    .table-responsive>.table-bordered>thead>tr>td:first-child,
+    .table-responsive>.table-bordered>tbody>tr>td:first-child,
+    .table-responsive>.table-bordered>tfoot>tr>td:first-child {
+        border-left: 0;
+    }
+
+    .table-responsive>.table-bordered>thead>tr>th:last-child,
+    .table-responsive>.table-bordered>tbody>tr>th:last-child,
+    .table-responsive>.table-bordered>tfoot>tr>th:last-child,
+    .table-responsive>.table-bordered>thead>tr>td:last-child,
+    .table-responsive>.table-bordered>tbody>tr>td:last-child,
+    .table-responsive>.table-bordered>tfoot>tr>td:last-child {
+        border-right: 0;
+    }
+
+    .table-responsive>.table-bordered>tbody>tr:last-child>th,
+    .table-responsive>.table-bordered>tfoot>tr:last-child>th,
+    .table-responsive>.table-bordered>tbody>tr:last-child>td,
+    .table-responsive>.table-bordered>tfoot>tr:last-child>td {
+        border-bottom: 0;
+    }
+}
+
+fieldset {
+    min-width: 0;
+    padding: 0;
+    margin: 0;
+    border: 0;
+}
+
+legend {
+    display: block;
+    width: 100%;
+    padding: 0;
+    margin-bottom: 20px;
+    font-size: 21px;
+    line-height: inherit;
+    color: #333;
+    border: 0;
+    border-bottom: 1px solid #e5e5e5;
+}
+
+label {
+    display: inline-block;
+    max-width: 100%;
+    margin-bottom: 5px;
+    font-weight: bold;
+}
+
+input[type="search"] {
+    -webkit-box-sizing: border-box;
+    -moz-box-sizing: border-box;
+    box-sizing: border-box;
+}
+
+input[type="radio"],
+input[type="checkbox"] {
+    margin: 4px 0 0;
+    margin-top: 1px \9;
+    line-height: normal;
+}
+
+input[type="file"] {
+    display: block;
+}
+
+input[type="range"] {
+    display: block;
+    width: 100%;
+}
+
+select[multiple],
+select[size] {
+    height: auto;
+}
+
+input[type="file"]:focus,
+input[type="radio"]:focus,
+input[type="checkbox"]:focus {
+    outline: thin dotted;
+    outline: 5px auto -webkit-focus-ring-color;
+    outline-offset: -2px;
+}
+
+output {
+    display: block;
+    padding-top: 7px;
+    font-size: 14px;
+    line-height: 1.42857143;
+    color: #555;
+}
+
+.form-control {
+    display: block;
+    width: 100%;
+    height: 34px;
+    padding: 6px 12px;
+    font-size: 14px;
+    line-height: 1.42857143;
+    color: #000;
+    background-color: #fff;
+    background-image: none;
+    border: 1px solid #ccc;
+    border-radius: 4px;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+    -webkit-transition: border-color ease-in-out .15s, -webkit-box-shadow ease-in-out .15s;
+    -o-transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;
+    transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;
+}
+
+.form-control:focus {
+    border-color: #66afe9;
+    outline: 0;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 8px rgba(102, 175, 233, .6);
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 8px rgba(102, 175, 233, .6);
+}
+
+.form-control::-moz-placeholder {
+    color: #999;
+    opacity: 1;
+}
+
+.form-control:-ms-input-placeholder {
+    color: #999;
+}
+
+.form-control::-webkit-input-placeholder {
+    color: #999;
+}
+
+.form-control[disabled],
+.form-control[readonly],
+fieldset[disabled] .form-control {
+    cursor: not-allowed;
+    background-color: #eee;
+    opacity: 1;
+}
+
+textarea.form-control {
+    height: auto;
+}
+
+input[type="search"] {
+    -webkit-appearance: none;
+}
+
+input[type="date"],
+input[type="time"],
+input[type="datetime-local"],
+input[type="month"] {
+    line-height: 34px;
+    line-height: 1.42857143 \0;
+}
+
+input[type="date"].input-sm,
+input[type="time"].input-sm,
+input[type="datetime-local"].input-sm,
+input[type="month"].input-sm {
+    line-height: 30px;
+    line-height: 1.5 \0;
+}
+
+input[type="date"].input-lg,
+input[type="time"].input-lg,
+input[type="datetime-local"].input-lg,
+input[type="month"].input-lg {
+    line-height: 46px;
+    line-height: 1.33 \0;
+}
+
+_:-ms-fullscreen,
+:root input[type="date"],
+_:-ms-fullscreen,
+:root input[type="time"],
+_:-ms-fullscreen,
+:root input[type="datetime-local"],
+_:-ms-fullscreen,
+:root input[type="month"] {
+    line-height: 1.42857143;
+}
+
+_:-ms-fullscreen.input-sm,
+:root input[type="date"].input-sm,
+_:-ms-fullscreen.input-sm,
+:root input[type="time"].input-sm,
+_:-ms-fullscreen.input-sm,
+:root input[type="datetime-local"].input-sm,
+_:-ms-fullscreen.input-sm,
+:root input[type="month"].input-sm {
+    line-height: 1.5;
+}
+
+_:-ms-fullscreen.input-lg,
+:root input[type="date"].input-lg,
+_:-ms-fullscreen.input-lg,
+:root input[type="time"].input-lg,
+_:-ms-fullscreen.input-lg,
+:root input[type="datetime-local"].input-lg,
+_:-ms-fullscreen.input-lg,
+:root input[type="month"].input-lg {
+    line-height: 1.33;
+}
+
+.form-group {
+    margin-bottom: 15px;
+}
+
+.radio,
+.checkbox {
+    position: relative;
+    display: block;
+    margin-top: 10px;
+    margin-bottom: 10px;
+}
+
+.radio label,
+.checkbox label {
+    min-height: 20px;
+    padding-left: 20px;
+    margin-bottom: 0;
+    font-weight: normal;
+    cursor: pointer;
+}
+
+.radio input[type="radio"],
+.radio-inline input[type="radio"],
+.checkbox input[type="checkbox"],
+.checkbox-inline input[type="checkbox"] {
+    position: absolute;
+    margin-top: 4px \9;
+    margin-left: -20px;
+}
+
+.radio+.radio,
+.checkbox+.checkbox {
+    margin-top: -5px;
+}
+
+.radio-inline,
+.checkbox-inline {
+    display: inline-block;
+    padding-left: 20px;
+    margin-bottom: 0;
+    font-weight: normal;
+    vertical-align: middle;
+    cursor: pointer;
+}
+
+.radio-inline+.radio-inline,
+.checkbox-inline+.checkbox-inline {
+    margin-top: 0;
+    margin-left: 10px;
+}
+
+input[type="radio"][disabled],
+input[type="checkbox"][disabled],
+input[type="radio"].disabled,
+input[type="checkbox"].disabled,
+fieldset[disabled] input[type="radio"],
+fieldset[disabled] input[type="checkbox"] {
+    cursor: not-allowed;
+}
+
+.radio-inline.disabled,
+.checkbox-inline.disabled,
+fieldset[disabled] .radio-inline,
+fieldset[disabled] .checkbox-inline {
+    cursor: not-allowed;
+}
+
+.radio.disabled label,
+.checkbox.disabled label,
+fieldset[disabled] .radio label,
+fieldset[disabled] .checkbox label {
+    cursor: not-allowed;
+}
+
+.form-control-static {
+    padding-top: 7px;
+    padding-bottom: 7px;
+    margin-bottom: 0;
+}
+
+.form-control-static.input-lg,
+.form-control-static.input-sm {
+    padding-right: 0;
+    padding-left: 0;
+}
+
+.input-sm,
+.form-group-sm .form-control {
+    height: 30px;
+    padding: 5px 10px;
+    font-size: 12px;
+    line-height: 1.5;
+    border-radius: 3px;
+}
+
+select.input-sm,
+select.form-group-sm .form-control {
+    height: 30px;
+    line-height: 30px;
+}
+
+textarea.input-sm,
+textarea.form-group-sm .form-control,
+select[multiple].input-sm,
+select[multiple].form-group-sm .form-control {
+    height: auto;
+}
+
+.input-lg,
+.form-group-lg .form-control {
+    height: 46px;
+    padding: 10px 16px;
+    font-size: 18px;
+    line-height: 1.33;
+    border-radius: 6px;
+}
+
+select.input-lg,
+select.form-group-lg .form-control {
+    height: 46px;
+    line-height: 46px;
+}
+
+textarea.input-lg,
+textarea.form-group-lg .form-control,
+select[multiple].input-lg,
+select[multiple].form-group-lg .form-control {
+    height: auto;
+}
+
+.has-feedback {
+    position: relative;
+}
+
+.has-feedback .form-control {
+    padding-right: 42.5px;
+}
+
+.form-control-feedback {
+    position: absolute;
+    top: 0;
+    right: 0;
+    z-index: 2;
+    display: block;
+    width: 34px;
+    height: 34px;
+    line-height: 34px;
+    text-align: center;
+    pointer-events: none;
+}
+
+.input-lg+.form-control-feedback {
+    width: 46px;
+    height: 46px;
+    line-height: 46px;
+}
+
+.input-sm+.form-control-feedback {
+    width: 30px;
+    height: 30px;
+    line-height: 30px;
+}
+
+.has-success .help-block,
+.has-success .control-label,
+.has-success .radio,
+.has-success .checkbox,
+.has-success .radio-inline,
+.has-success .checkbox-inline,
+.has-success.radio label,
+.has-success.checkbox label,
+.has-success.radio-inline label,
+.has-success.checkbox-inline label {
+    color: #3c763d;
+}
+
+.has-success .form-control {
+    border-color: #3c763d;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+}
+
+.has-success .form-control:focus {
+    border-color: #2b542c;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168;
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168;
+}
+
+.has-success .input-group-addon {
+    color: #3c763d;
+    background-color: #dff0d8;
+    border-color: #3c763d;
+}
+
+.has-success .form-control-feedback {
+    color: #3c763d;
+}
+
+.has-warning .help-block,
+.has-warning .control-label,
+.has-warning .radio,
+.has-warning .checkbox,
+.has-warning .radio-inline,
+.has-warning .checkbox-inline,
+.has-warning.radio label,
+.has-warning.checkbox label,
+.has-warning.radio-inline label,
+.has-warning.checkbox-inline label {
+    color: #8a6d3b;
+}
+
+.has-warning .form-control {
+    border-color: #8a6d3b;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+}
+
+.has-warning .form-control:focus {
+    border-color: #66512c;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b;
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b;
+}
+
+.has-warning .input-group-addon {
+    color: #8a6d3b;
+    background-color: #fcf8e3;
+    border-color: #8a6d3b;
+}
+
+.has-warning .form-control-feedback {
+    color: #8a6d3b;
+}
+
+.has-error .help-block,
+.has-error .control-label,
+.has-error .radio,
+.has-error .checkbox,
+.has-error .radio-inline,
+.has-error .checkbox-inline,
+.has-error.radio label,
+.has-error.checkbox label,
+.has-error.radio-inline label,
+.has-error.checkbox-inline label {
+    color: #a94442;
+}
+
+.has-error .form-control {
+    border-color: #a94442;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+}
+
+.has-error .form-control:focus {
+    border-color: #843534;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483;
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483;
+}
+
+.has-error .input-group-addon {
+    color: #a94442;
+    background-color: #f2dede;
+    border-color: #a94442;
+}
+
+.has-error .form-control-feedback {
+    color: #a94442;
+}
+
+.has-feedback label~.form-control-feedback {
+    top: 25px;
+}
+
+.has-feedback label.sr-only~.form-control-feedback {
+    top: 0;
+}
+
+.help-block {
+    display: block;
+    margin-top: 5px;
+    margin-bottom: 10px;
+    color: #737373;
+}
+
+@media (min-width: 768px) {
+    .form-inline .form-group {
+        display: inline-block;
+        margin-bottom: 0;
+        vertical-align: middle;
+    }
+
+    .form-inline .form-control {
+        display: inline-block;
+        width: auto;
+        vertical-align: middle;
+    }
+
+    .form-inline .form-control-static {
+        display: inline-block;
+    }
+
+    .form-inline .input-group {
+        display: inline-table;
+        vertical-align: middle;
+    }
+
+    .form-inline .input-group .input-group-addon,
+    .form-inline .input-group .input-group-btn,
+    .form-inline .input-group .form-control {
+        width: auto;
+    }
+
+    .form-inline .input-group>.form-control {
+        width: 100%;
+    }
+
+    .form-inline .control-label {
+        margin-bottom: 0;
+        vertical-align: middle;
+    }
+
+    .form-inline .radio,
+    .form-inline .checkbox {
+        display: inline-block;
+        margin-top: 0;
+        margin-bottom: 0;
+        vertical-align: middle;
+    }
+
+    .form-inline .radio label,
+    .form-inline .checkbox label {
+        padding-left: 0;
+    }
+
+    .form-inline .radio input[type="radio"],
+    .form-inline .checkbox input[type="checkbox"] {
+        position: relative;
+        margin-left: 0;
+    }
+
+    .form-inline .has-feedback .form-control-feedback {
+        top: 0;
+    }
+}
+
+.form-horizontal .radio,
+.form-horizontal .checkbox,
+.form-horizontal .radio-inline,
+.form-horizontal .checkbox-inline {
+    padding-top: 7px;
+    margin-top: 0;
+    margin-bottom: 0;
+}
+
+.form-horizontal .radio,
+.form-horizontal .checkbox {
+    min-height: 27px;
+}
+
+.form-horizontal .form-group {
+    margin-right: -15px;
+    margin-left: -15px;
+}
+
+.form-horizontal .control-label {
+    padding-top: 7px;
+    margin-bottom: 0;
+    text-align: right;
+}
+
+.form-horizontal .control-label.text-left{
+    text-align: left;
+}
+
+.form-horizontal .has-feedback .form-control-feedback {
+    right: 15px;
+}
+
+@media (min-width: 768px) {
+    .form-horizontal .form-group-lg .control-label {
+        padding-top: 14.3px;
+    }
+}
+
+@media (min-width: 768px) {
+    .form-horizontal .form-group-sm .control-label {
+        padding-top: 6px;
+    }
+}
+
+.btn {
+    display: inline-block;
+    padding: 6px 12px;
+    margin-bottom: 0;
+    font-size: 14px;
+    font-weight: normal;
+    line-height: 1.42857143;
+    text-align: center;
+    white-space: nowrap;
+    vertical-align: middle;
+    -ms-touch-action: manipulation;
+    touch-action: manipulation;
+    cursor: pointer;
+    -webkit-user-select: none;
+    -moz-user-select: none;
+    -ms-user-select: none;
+    user-select: none;
+    background-image: none;
+    border: 1px solid transparent;
+    border-radius: 4px;
+}
+
+.btn:focus,
+.btn:active:focus,
+.btn.active:focus,
+.btn.focus,
+.btn:active.focus,
+.btn.active.focus {
+    outline: thin dotted;
+    outline: 5px auto -webkit-focus-ring-color;
+    outline-offset: -2px;
+}
+
+.btn:hover,
+.btn:focus,
+.btn.focus {
+    color: #333;
+    text-decoration: none;
+}
+
+.btn:active,
+.btn.active {
+    background-image: none;
+    outline: 0;
+    -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+    box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+}
+
+.btn.disabled,
+.btn[disabled],
+fieldset[disabled] .btn {
+    pointer-events: none;
+    cursor: not-allowed;
+    filter: alpha(opacity=65);
+    -webkit-box-shadow: none;
+    box-shadow: none;
+    opacity: .65;
+}
+
+.btn-default {
+    color: #333;
+    background-color: #fff;
+    border-color: #ccc;
+}
+
+.btn-default:hover,
+.btn-default:focus,
+.btn-default.focus,
+.btn-default:active,
+.btn-default.active,
+.open>.dropdown-toggle.btn-default {
+    color: #333;
+    background-color: #e6e6e6;
+    border-color: #adadad;
+}
+
+.btn-default:active,
+.btn-default.active,
+.open>.dropdown-toggle.btn-default {
+    background-image: none;
+}
+
+.btn-default.disabled,
+.btn-default[disabled],
+fieldset[disabled] .btn-default,
+.btn-default.disabled:hover,
+.btn-default[disabled]:hover,
+fieldset[disabled] .btn-default:hover,
+.btn-default.disabled:focus,
+.btn-default[disabled]:focus,
+fieldset[disabled] .btn-default:focus,
+.btn-default.disabled.focus,
+.btn-default[disabled].focus,
+fieldset[disabled] .btn-default.focus,
+.btn-default.disabled:active,
+.btn-default[disabled]:active,
+fieldset[disabled] .btn-default:active,
+.btn-default.disabled.active,
+.btn-default[disabled].active,
+fieldset[disabled] .btn-default.active {
+    background-color: #fff;
+    border-color: #ccc;
+}
+
+.btn-default .badge {
+    color: #fff;
+    background-color: #333;
+}
+
+.btn-primary {
+    color: #fff;
+    background-color: #369;
+    border-color: #357ebd;
+}
+
+.btn-primary:hover,
+.btn-primary:focus,
+.btn-primary.focus,
+.btn-primary:active,
+.btn-primary.active,
+.open>.dropdown-toggle.btn-primary {
+    color: #fff;
+    background-color: #3071a9;
+    border-color: #285e8e;
+}
+
+.btn-primary:active,
+.btn-primary.active,
+.open>.dropdown-toggle.btn-primary {
+    background-image: none;
+}
+
+.btn-primary.disabled,
+.btn-primary[disabled],
+fieldset[disabled] .btn-primary,
+.btn-primary.disabled:hover,
+.btn-primary[disabled]:hover,
+fieldset[disabled] .btn-primary:hover,
+.btn-primary.disabled:focus,
+.btn-primary[disabled]:focus,
+fieldset[disabled] .btn-primary:focus,
+.btn-primary.disabled.focus,
+.btn-primary[disabled].focus,
+fieldset[disabled] .btn-primary.focus,
+.btn-primary.disabled:active,
+.btn-primary[disabled]:active,
+fieldset[disabled] .btn-primary:active,
+.btn-primary.disabled.active,
+.btn-primary[disabled].active,
+fieldset[disabled] .btn-primary.active {
+    background-color: #428bca;
+    border-color: #357ebd;
+}
+
+.btn-primary .badge {
+    color: #428bca;
+    background-color: #fff;
+}
+
+.btn-success {
+    color: #fff;
+    background-color: #5cb85c;
+    border-color: #4cae4c;
+}
+
+.btn-success:hover,
+.btn-success:focus,
+.btn-success.focus,
+.btn-success:active,
+.btn-success.active,
+.open>.dropdown-toggle.btn-success {
+    color: #fff;
+    background-color: #449d44;
+    border-color: #398439;
+}
+
+.btn-success:active,
+.btn-success.active,
+.open>.dropdown-toggle.btn-success {
+    background-image: none;
+}
+
+.btn-success.disabled,
+.btn-success[disabled],
+fieldset[disabled] .btn-success,
+.btn-success.disabled:hover,
+.btn-success[disabled]:hover,
+fieldset[disabled] .btn-success:hover,
+.btn-success.disabled:focus,
+.btn-success[disabled]:focus,
+fieldset[disabled] .btn-success:focus,
+.btn-success.disabled.focus,
+.btn-success[disabled].focus,
+fieldset[disabled] .btn-success.focus,
+.btn-success.disabled:active,
+.btn-success[disabled]:active,
+fieldset[disabled] .btn-success:active,
+.btn-success.disabled.active,
+.btn-success[disabled].active,
+fieldset[disabled] .btn-success.active {
+    background-color: #5cb85c;
+    border-color: #4cae4c;
+}
+
+.btn-success .badge {
+    color: #5cb85c;
+    background-color: #fff;
+}
+
+.btn-info {
+    color: #fff;
+    background-color: #5bc0de;
+    border-color: #46b8da;
+}
+
+.btn-info:hover,
+.btn-info:focus,
+.btn-info.focus,
+.btn-info:active,
+.btn-info.active,
+.open>.dropdown-toggle.btn-info {
+    color: #fff;
+    background-color: #31b0d5;
+    border-color: #269abc;
+}
+
+.btn-info:active,
+.btn-info.active,
+.open>.dropdown-toggle.btn-info {
+    background-image: none;
+}
+
+.btn-info.disabled,
+.btn-info[disabled],
+fieldset[disabled] .btn-info,
+.btn-info.disabled:hover,
+.btn-info[disabled]:hover,
+fieldset[disabled] .btn-info:hover,
+.btn-info.disabled:focus,
+.btn-info[disabled]:focus,
+fieldset[disabled] .btn-info:focus,
+.btn-info.disabled.focus,
+.btn-info[disabled].focus,
+fieldset[disabled] .btn-info.focus,
+.btn-info.disabled:active,
+.btn-info[disabled]:active,
+fieldset[disabled] .btn-info:active,
+.btn-info.disabled.active,
+.btn-info[disabled].active,
+fieldset[disabled] .btn-info.active {
+    background-color: #5bc0de;
+    border-color: #46b8da;
+}
+
+.btn-info .badge {
+    color: #5bc0de;
+    background-color: #fff;
+}
+
+.btn-warning {
+    color: #fff;
+    background-color: #f0ad4e;
+    border-color: #eea236;
+}
+
+.btn-warning:hover,
+.btn-warning:focus,
+.btn-warning.focus,
+.btn-warning:active,
+.btn-warning.active,
+.open>.dropdown-toggle.btn-warning {
+    color: #fff;
+    background-color: #ec971f;
+    border-color: #d58512;
+}
+
+.btn-warning:active,
+.btn-warning.active,
+.open>.dropdown-toggle.btn-warning {
+    background-image: none;
+}
+
+.btn-warning.disabled,
+.btn-warning[disabled],
+fieldset[disabled] .btn-warning,
+.btn-warning.disabled:hover,
+.btn-warning[disabled]:hover,
+fieldset[disabled] .btn-warning:hover,
+.btn-warning.disabled:focus,
+.btn-warning[disabled]:focus,
+fieldset[disabled] .btn-warning:focus,
+.btn-warning.disabled.focus,
+.btn-warning[disabled].focus,
+fieldset[disabled] .btn-warning.focus,
+.btn-warning.disabled:active,
+.btn-warning[disabled]:active,
+fieldset[disabled] .btn-warning:active,
+.btn-warning.disabled.active,
+.btn-warning[disabled].active,
+fieldset[disabled] .btn-warning.active {
+    background-color: #f0ad4e;
+    border-color: #eea236;
+}
+
+.btn-warning .badge {
+    color: #f0ad4e;
+    background-color: #fff;
+}
+
+.btn-danger {
+    color: #fff;
+    background-color: #d9534f;
+    border-color: #d43f3a;
+}
+
+.btn-danger:hover,
+.btn-danger:focus,
+.btn-danger.focus,
+.btn-danger:active,
+.btn-danger.active,
+.open>.dropdown-toggle.btn-danger {
+    color: #fff;
+    background-color: #c9302c;
+    border-color: #ac2925;
+}
+
+.btn-danger:active,
+.btn-danger.active,
+.open>.dropdown-toggle.btn-danger {
+    background-image: none;
+}
+
+.btn-danger.disabled,
+.btn-danger[disabled],
+fieldset[disabled] .btn-danger,
+.btn-danger.disabled:hover,
+.btn-danger[disabled]:hover,
+fieldset[disabled] .btn-danger:hover,
+.btn-danger.disabled:focus,
+.btn-danger[disabled]:focus,
+fieldset[disabled] .btn-danger:focus,
+.btn-danger.disabled.focus,
+.btn-danger[disabled].focus,
+fieldset[disabled] .btn-danger.focus,
+.btn-danger.disabled:active,
+.btn-danger[disabled]:active,
+fieldset[disabled] .btn-danger:active,
+.btn-danger.disabled.active,
+.btn-danger[disabled].active,
+fieldset[disabled] .btn-danger.active {
+    background-color: #d9534f;
+    border-color: #d43f3a;
+}
+
+.btn-danger .badge {
+    color: #d9534f;
+    background-color: #fff;
+}
+
+.btn-link {
+    font-weight: normal;
+    color: #428bca;
+    border-radius: 0;
+}
+
+.btn-link,
+.btn-link:active,
+.btn-link.active,
+.btn-link[disabled],
+fieldset[disabled] .btn-link {
+    background-color: transparent;
+    -webkit-box-shadow: none;
+    box-shadow: none;
+}
+
+.btn-link,
+.btn-link:hover,
+.btn-link:focus,
+.btn-link:active {
+    border-color: transparent;
+}
+
+.btn-link:hover,
+.btn-link:focus {
+    color: #2a6496;
+    text-decoration: underline;
+    background-color: transparent;
+}
+
+.btn-link[disabled]:hover,
+fieldset[disabled] .btn-link:hover,
+.btn-link[disabled]:focus,
+fieldset[disabled] .btn-link:focus {
+    color: #777;
+    text-decoration: none;
+}
+
+.btn-lg,
+.btn-group-lg>.btn {
+    padding: 10px 16px;
+    font-size: 18px;
+    line-height: 1.33;
+    border-radius: 6px;
+}
+
+.btn-sm,
+.btn-group-sm>.btn {
+    padding: 5px 10px;
+    font-size: 12px;
+    line-height: 1.5;
+    border-radius: 3px;
+}
+
+.btn-xs,
+.btn-group-xs>.btn {
+    padding: 1px 5px;
+    font-size: 12px;
+    line-height: 1.5;
+    border-radius: 3px;
+}
+
+.btn-block {
+    display: block;
+    width: 100%;
+}
+
+.btn-block+.btn-block {
+    margin-top: 5px;
+}
+
+input[type="submit"].btn-block,
+input[type="reset"].btn-block,
+input[type="button"].btn-block {
+    width: 100%;
+}
+
+.fade {
+    opacity: 0;
+    -webkit-transition: opacity .15s linear;
+    -o-transition: opacity .15s linear;
+    transition: opacity .15s linear;
+}
+
+.fade.in {
+    opacity: 1;
+}
+
+.collapse {
+    display: none;
+    visibility: hidden;
+}
+
+.collapse.in {
+    display: block;
+    visibility: visible;
+}
+
+tr.collapse.in {
+    display: table-row;
+}
+
+tbody.collapse.in {
+    display: table-row-group;
+}
+
+.collapsing {
+    position: relative;
+    height: 0;
+    overflow: hidden;
+    -webkit-transition-timing-function: ease;
+    -o-transition-timing-function: ease;
+    transition-timing-function: ease;
+    -webkit-transition-duration: .35s;
+    -o-transition-duration: .35s;
+    transition-duration: .35s;
+    -webkit-transition-property: height, visibility;
+    -o-transition-property: height, visibility;
+    transition-property: height, visibility;
+}
+
+.caret {
+    display: inline-block;
+    width: 0;
+    height: 0;
+    margin-left: 2px;
+    vertical-align: middle;
+    border-top: 4px solid;
+    border-right: 4px solid transparent;
+    border-left: 4px solid transparent;
+}
+
+.dropdown {
+    position: relative;
+}
+
+.dropdown-toggle:focus {
+    outline: 0;
+}
+
+.dropdown-menu {
+    position: absolute;
+    top: 100%;
+    left: 0;
+    z-index: 1000;
+    display: none;
+    float: left;
+    min-width: 160px;
+    padding: 5px 0;
+    margin: 2px 0 0;
+    font-size: 14px;
+    text-align: left;
+    list-style: none;
+    background-color: #fff;
+    -webkit-background-clip: padding-box;
+    background-clip: padding-box;
+    border: 1px solid #ccc;
+    border: 1px solid rgba(0, 0, 0, .15);
+    border-radius: 4px;
+    -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, .175);
+    box-shadow: 0 6px 12px rgba(0, 0, 0, .175);
+}
+
+.dropdown-menu.pull-right {
+    right: 0;
+    left: auto;
+}
+
+.dropdown-menu .divider {
+    height: 1px;
+    margin: 9px 0;
+    overflow: hidden;
+    background-color: #e5e5e5;
+}
+
+.dropdown-menu>li>a {
+    display: block;
+    padding: 3px 20px;
+    clear: both;
+    font-weight: normal;
+    line-height: 1.42857143;
+    color: #333;
+    white-space: nowrap;
+}
+
+.dropdown-menu>li>a:hover,
+.dropdown-menu>li>a:focus {
+    color: #262626;
+    text-decoration: none;
+    background-color: #f5f5f5;
+}
+
+.dropdown-menu>.active>a,
+.dropdown-menu>.active>a:hover,
+.dropdown-menu>.active>a:focus {
+    color: #fff;
+    text-decoration: none;
+    background-color: #428bca;
+    outline: 0;
+}
+
+.dropdown-menu>.disabled>a,
+.dropdown-menu>.disabled>a:hover,
+.dropdown-menu>.disabled>a:focus {
+    color: #777;
+}
+
+.dropdown-menu>.disabled>a:hover,
+.dropdown-menu>.disabled>a:focus {
+    text-decoration: none;
+    cursor: not-allowed;
+    background-color: transparent;
+    background-image: none;
+    filter: progid:DXImageTransform.Microsoft.gradient(enabled=false);
+}
+
+.open>.dropdown-menu {
+    display: block;
+}
+
+.open>a {
+    outline: 0;
+}
+
+.dropdown-menu-right {
+    right: 0;
+    left: auto;
+}
+
+.dropdown-menu-left {
+    right: auto;
+    left: 0;
+}
+
+.dropdown-header {
+    display: block;
+    padding: 3px 20px;
+    font-size: 12px;
+    line-height: 1.42857143;
+    color: #777;
+    white-space: nowrap;
+}
+
+.dropdown-backdrop {
+    position: fixed;
+    top: 0;
+    right: 0;
+    bottom: 0;
+    left: 0;
+    z-index: 990;
+}
+
+.pull-right>.dropdown-menu {
+    right: 0;
+    left: auto;
+}
+
+.dropup .caret,
+.navbar-fixed-bottom .dropdown .caret {
+    content: "";
+    border-top: 0;
+    border-bottom: 4px solid;
+}
+
+.dropup .dropdown-menu,
+.navbar-fixed-bottom .dropdown .dropdown-menu {
+    top: auto;
+    bottom: 100%;
+    margin-bottom: 1px;
+}
+
+@media (min-width: 768px) {
+    .navbar-right .dropdown-menu {
+        right: 0;
+        left: auto;
+    }
+
+    .navbar-right .dropdown-menu-left {
+        right: auto;
+        left: 0;
+    }
+}
+
+.btn-group,
+.btn-group-vertical {
+    position: relative;
+    display: inline-block;
+    vertical-align: middle;
+}
+
+.btn-group>.btn,
+.btn-group-vertical>.btn {
+    position: relative;
+    float: left;
+}
+
+.btn-group>.btn:hover,
+.btn-group-vertical>.btn:hover,
+.btn-group>.btn:focus,
+.btn-group-vertical>.btn:focus,
+.btn-group>.btn:active,
+.btn-group-vertical>.btn:active,
+.btn-group>.btn.active,
+.btn-group-vertical>.btn.active {
+    z-index: 2;
+}
+
+.btn-group>.btn:focus,
+.btn-group-vertical>.btn:focus {
+    outline: 0;
+}
+
+.btn-group .btn+.btn,
+.btn-group .btn+.btn-group,
+.btn-group .btn-group+.btn,
+.btn-group .btn-group+.btn-group {
+    margin-left: -1px;
+}
+
+.btn-toolbar {
+    margin-left: -5px;
+}
+
+.btn-toolbar .btn-group,
+.btn-toolbar .input-group {
+    float: left;
+}
+
+.btn-toolbar>.btn,
+.btn-toolbar>.btn-group,
+.btn-toolbar>.input-group {
+    margin-left: 5px;
+}
+
+.btn-group>.btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {
+    border-radius: 0;
+}
+
+.btn-group>.btn:first-child {
+    margin-left: 0;
+}
+
+.btn-group>.btn:first-child:not(:last-child):not(.dropdown-toggle) {
+    border-top-right-radius: 0;
+    border-bottom-right-radius: 0;
+}
+
+.btn-group>.btn:last-child:not(:first-child),
+.btn-group>.dropdown-toggle:not(:first-child) {
+    border-top-left-radius: 0;
+    border-bottom-left-radius: 0;
+}
+
+.btn-group>.btn-group {
+    float: left;
+}
+
+.btn-group>.btn-group:not(:first-child):not(:last-child)>.btn {
+    border-radius: 0;
+}
+
+.btn-group>.btn-group:first-child>.btn:last-child,
+.btn-group>.btn-group:first-child>.dropdown-toggle {
+    border-top-right-radius: 0;
+    border-bottom-right-radius: 0;
+}
+
+.btn-group>.btn-group:last-child>.btn:first-child {
+    border-top-left-radius: 0;
+    border-bottom-left-radius: 0;
+}
+
+.btn-group .dropdown-toggle:active,
+.btn-group.open .dropdown-toggle {
+    outline: 0;
+}
+
+.btn-group>.btn+.dropdown-toggle {
+    padding-right: 8px;
+    padding-left: 8px;
+}
+
+.btn-group>.btn-lg+.dropdown-toggle {
+    padding-right: 12px;
+    padding-left: 12px;
+}
+
+.btn-group.open .dropdown-toggle {
+    -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+    box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+}
+
+.btn-group.open .dropdown-toggle.btn-link {
+    -webkit-box-shadow: none;
+    box-shadow: none;
+}
+
+.btn .caret {
+    margin-left: 0;
+}
+
+.btn-lg .caret {
+    border-width: 5px 5px 0;
+    border-bottom-width: 0;
+}
+
+.dropup .btn-lg .caret {
+    border-width: 0 5px 5px;
+}
+
+.btn-group-vertical>.btn,
+.btn-group-vertical>.btn-group,
+.btn-group-vertical>.btn-group>.btn {
+    display: block;
+    float: none;
+    width: 100%;
+    max-width: 100%;
+}
+
+.btn-group-vertical>.btn-group>.btn {
+    float: none;
+}
+
+.btn-group-vertical>.btn+.btn,
+.btn-group-vertical>.btn+.btn-group,
+.btn-group-vertical>.btn-group+.btn,
+.btn-group-vertical>.btn-group+.btn-group {
+    margin-top: -1px;
+    margin-left: 0;
+}
+
+.btn-group-vertical>.btn:not(:first-child):not(:last-child) {
+    border-radius: 0;
+}
+
+.btn-group-vertical>.btn:first-child:not(:last-child) {
+    border-top-right-radius: 4px;
+    border-bottom-right-radius: 0;
+    border-bottom-left-radius: 0;
+}
+
+.btn-group-vertical>.btn:last-child:not(:first-child) {
+    border-top-left-radius: 0;
+    border-top-right-radius: 0;
+    border-bottom-left-radius: 4px;
+}
+
+.btn-group-vertical>.btn-group:not(:first-child):not(:last-child)>.btn {
+    border-radius: 0;
+}
+
+.btn-group-vertical>.btn-group:first-child:not(:last-child)>.btn:last-child,
+.btn-group-vertical>.btn-group:first-child:not(:last-child)>.dropdown-toggle {
+    border-bottom-right-radius: 0;
+    border-bottom-left-radius: 0;
+}
+
+.btn-group-vertical>.btn-group:last-child:not(:first-child)>.btn:first-child {
+    border-top-left-radius: 0;
+    border-top-right-radius: 0;
+}
+
+.btn-group-justified {
+    display: table;
+    width: 100%;
+    table-layout: fixed;
+    border-collapse: separate;
+}
+
+.btn-group-justified>.btn,
+.btn-group-justified>.btn-group {
+    display: table-cell;
+    float: none;
+    width: 1%;
+}
+
+.btn-group-justified>.btn-group .btn {
+    width: 100%;
+}
+
+.btn-group-justified>.btn-group .dropdown-menu {
+    left: auto;
+}
+
+[data-toggle="buttons"]>.btn input[type="radio"],
+[data-toggle="buttons"]>.btn-group>.btn input[type="radio"],
+[data-toggle="buttons"]>.btn input[type="checkbox"],
+[data-toggle="buttons"]>.btn-group>.btn input[type="checkbox"] {
+    position: absolute;
+    clip: rect(0, 0, 0, 0);
+    pointer-events: none;
+}
+
+.input-group {
+    position: relative;
+    display: table;
+    border-collapse: separate;
+}
+
+.input-group[class*="col-"] {
+    float: none;
+    padding-right: 0;
+    padding-left: 0;
+}
+
+.input-group .form-control {
+    position: relative;
+    z-index: 2;
+    float: left;
+    width: 100%;
+    margin-bottom: 0;
+}
+
+.input-group-lg>.form-control,
+.input-group-lg>.input-group-addon,
+.input-group-lg>.input-group-btn>.btn {
+    height: 46px;
+    padding: 10px 16px;
+    font-size: 18px;
+    line-height: 1.33;
+    border-radius: 6px;
+}
+
+select.input-group-lg>.form-control,
+select.input-group-lg>.input-group-addon,
+select.input-group-lg>.input-group-btn>.btn {
+    height: 46px;
+    line-height: 46px;
+}
+
+textarea.input-group-lg>.form-control,
+textarea.input-group-lg>.input-group-addon,
+textarea.input-group-lg>.input-group-btn>.btn,
+select[multiple].input-group-lg>.form-control,
+select[multiple].input-group-lg>.input-group-addon,
+select[multiple].input-group-lg>.input-group-btn>.btn {
+    height: auto;
+}
+
+.input-group-sm>.form-control,
+.input-group-sm>.input-group-addon,
+.input-group-sm>.input-group-btn>.btn {
+    height: 30px;
+    padding: 5px 10px;
+    font-size: 12px;
+    line-height: 1.5;
+    border-radius: 3px;
+}
+
+select.input-group-sm>.form-control,
+select.input-group-sm>.input-group-addon,
+select.input-group-sm>.input-group-btn>.btn {
+    height: 30px;
+    line-height: 30px;
+}
+
+textarea.input-group-sm>.form-control,
+textarea.input-group-sm>.input-group-addon,
+textarea.input-group-sm>.input-group-btn>.btn,
+select[multiple].input-group-sm>.form-control,
+select[multiple].input-group-sm>.input-group-addon,
+select[multiple].input-group-sm>.input-group-btn>.btn {
+    height: auto;
+}
+
+.input-group-addon,
+.input-group-btn,
+.input-group .form-control {
+    display: table-cell;
+}
+
+.input-group-addon:not(:first-child):not(:last-child),
+.input-group-btn:not(:first-child):not(:last-child),
+.input-group .form-control:not(:first-child):not(:last-child) {
+    border-radius: 0;
+}
+
+.input-group-addon,
+.input-group-btn {
+    width: 1%;
+    white-space: nowrap;
+    vertical-align: middle;
+}
+
+.input-group-addon {
+    padding: 6px 12px;
+    font-size: 14px;
+    font-weight: normal;
+    line-height: 1;
+    color: #555;
+    text-align: center;
+    background-color: #eee;
+    border: 1px solid #ccc;
+    border-radius: 4px;
+}
+
+.input-group-addon.input-sm {
+    padding: 5px 10px;
+    font-size: 12px;
+    border-radius: 3px;
+}
+
+.input-group-addon.input-lg {
+    padding: 10px 16px;
+    font-size: 18px;
+    border-radius: 6px;
+}
+
+.input-group-addon input[type="radio"],
+.input-group-addon input[type="checkbox"] {
+    margin-top: 0;
+}
+
+.input-group .form-control:first-child,
+.input-group-addon:first-child,
+.input-group-btn:first-child>.btn,
+.input-group-btn:first-child>.btn-group>.btn,
+.input-group-btn:first-child>.dropdown-toggle,
+.input-group-btn:last-child>.btn:not(:last-child):not(.dropdown-toggle),
+.input-group-btn:last-child>.btn-group:not(:last-child)>.btn {
+    border-top-right-radius: 0;
+    border-bottom-right-radius: 0;
+}
+
+.input-group-addon:first-child {
+    border-right: 0;
+}
+
+.input-group .form-control:last-child,
+.input-group-addon:last-child,
+.input-group-btn:last-child>.btn,
+.input-group-btn:last-child>.btn-group>.btn,
+.input-group-btn:last-child>.dropdown-toggle,
+.input-group-btn:first-child>.btn:not(:first-child),
+.input-group-btn:first-child>.btn-group:not(:first-child)>.btn {
+    border-top-left-radius: 0;
+    border-bottom-left-radius: 0;
+}
+
+.input-group-addon:last-child {
+    border-left: 0;
+}
+
+.input-group-btn {
+    position: relative;
+    font-size: 0;
+    white-space: nowrap;
+}
+
+.input-group-btn>.btn {
+    position: relative;
+}
+
+.input-group-btn>.btn+.btn {
+    margin-left: -1px;
+}
+
+.input-group-btn>.btn:hover,
+.input-group-btn>.btn:focus,
+.input-group-btn>.btn:active {
+    z-index: 2;
+}
+
+.input-group-btn:first-child>.btn,
+.input-group-btn:first-child>.btn-group {
+    margin-right: -1px;
+}
+
+.input-group-btn:last-child>.btn,
+.input-group-btn:last-child>.btn-group {
+    margin-left: -1px;
+}
+
+.nav {
+    padding-left: 0;
+    margin-bottom: 0;
+    list-style: none;
+}
+
+.nav>li {
+    margin-right: 10px;
+    position: relative;
+    display: block;
+}
+
+.nav>li>a {
+    position: relative;
+    display: block;
+    padding: 10px 15px;
+}
+
+.nav>li>a:hover,
+.nav>li>a:focus {
+    text-decoration: none;
+    background-color: #eee;
+}
+
+.nav>li.disabled>a {
+    color: #777;
+}
+
+.nav>li.disabled>a:hover,
+.nav>li.disabled>a:focus {
+    color: #777;
+    text-decoration: none;
+    cursor: not-allowed;
+    background-color: transparent;
+}
+
+.nav .open>a,
+.nav .open>a:hover,
+.nav .open>a:focus {
+    background-color: #eee;
+    border-color: #428bca;
+}
+
+.nav .nav-divider {
+    height: 1px;
+    margin: 9px 0;
+    overflow: hidden;
+    background-color: #e5e5e5;
+}
+
+.nav>li>a>img {
+    max-width: none;
+}
+
+.nav-tabs {
+    border-bottom: 1px solid #ddd;
+}
+
+.nav-tabs>li {
+    float: left;
+    margin-bottom: -1px;
+}
+
+.nav-tabs>li>a {
+    margin-right: 2px;
+    line-height: 1.42857143;
+    border: 1px solid transparent;
+    border-radius: 4px 4px 0 0;
+}
+
+.nav-tabs>li>a:hover {
+    border-color: #eee #eee #ddd;
+}
+
+.nav-tabs>li.active>a,
+.nav-tabs>li.active>a:hover,
+.nav-tabs>li.active>a:focus {
+    color: #555;
+    cursor: default;
+    background-color: #fff;
+    border: 1px solid #ddd;
+    border-bottom-color: transparent;
+}
+
+.nav-tabs.nav-justified {
+    width: 100%;
+    border-bottom: 0;
+}
+
+.nav-tabs.nav-justified>li {
+    float: none;
+}
+
+.nav-tabs.nav-justified>li>a {
+    margin-bottom: 5px;
+    text-align: center;
+}
+
+.nav-tabs.nav-justified>.dropdown .dropdown-menu {
+    top: auto;
+    left: auto;
+}
+
+.nav-tabs.nav-justified>li {
+    display: table-cell;
+    width: 1%;
+}
+
+.nav-tabs.nav-justified>li>a {
+    margin-bottom: 0;
+}
+
+.nav-tabs.nav-justified>li>a {
+    margin-right: 0;
+    border-radius: 4px;
+}
+
+.nav-tabs.nav-justified>.active>a,
+.nav-tabs.nav-justified>.active>a:hover,
+.nav-tabs.nav-justified>.active>a:focus {
+    border: 1px solid #ddd;
+}
+
+.nav-tabs.nav-justified>li>a {
+    border-bottom: 1px solid #ddd;
+    border-radius: 4px 4px 0 0;
+}
+
+.nav-tabs.nav-justified>.active>a,
+.nav-tabs.nav-justified>.active>a:hover,
+.nav-tabs.nav-justified>.active>a:focus {
+    border-bottom-color: #fff;
+}
+
+.nav-pills>li {
+    float: left;
+}
+
+.nav-pills>li>a {
+    border-radius: 4px;
+}
+
+.nav-pills>li+li {
+    margin-left: 2px;
+}
+
+.nav-pills>li.active>a,
+.nav-pills>li.active>a:hover,
+.nav-pills>li.active>a:focus {
+    color: #fff;
+    background-color: #3071a9;
+    /* Tab cell background color */
+}
+
+.nav-stacked>li {
+    float: none;
+}
+
+.nav-stacked>li+li {
+    margin-top: 2px;
+    margin-left: 0;
+}
+
+.nav-justified {
+    width: 100%;
+}
+
+.nav-justified>li {
+    float: none;
+}
+
+.nav-justified>li>a {
+    margin-bottom: 5px;
+    text-align: center;
+}
+
+.nav-justified>.dropdown .dropdown-menu {
+    top: auto;
+    left: auto;
+}
+
+.nav-justified>li {
+    display: table-cell;
+    width: 1%;
+}
+
+.nav-justified>li>a {
+    margin-bottom: 0;
+}
+
+.nav-tabs-justified {
+    border-bottom: 0;
+}
+
+.nav-tabs-justified>li>a {
+    margin-right: 0;
+    border-radius: 4px;
+}
+
+.nav-tabs-justified>.active>a,
+.nav-tabs-justified>.active>a:hover,
+.nav-tabs-justified>.active>a:focus {
+    border: 1px solid #ddd;
+}
+
+.nav-tabs-justified>li>a {
+    border-bottom: 1px solid #ddd;
+    border-radius: 4px 4px 0 0;
+}
+
+.nav-tabs-justified>.active>a,
+.nav-tabs-justified>.active>a:hover,
+.nav-tabs-justified>.active>a:focus {
+    border-bottom-color: #fff;
+}
+
+.tab-content>.tab-pane {
+    display: none;
+    visibility: hidden;
+}
+
+.tab-content>.active {
+    display: block;
+    visibility: visible;
+}
+
+.nav-tabs .dropdown-menu {
+    margin-top: -1px;
+    border-top-left-radius: 0;
+    border-top-right-radius: 0;
+}
+
+.navbar {
+    position: relative;
+    min-height: 30px;
+    border: 1px solid transparent;
+}
+
+/*
+@media (min-width: 768px) {
+  .navbar {
+    border-radius: 4px;
+  }
+}
+@media (min-width: 768px) {
+  .navbar-header {
+    float: left;
+  }
+}
+*/
+
+.navbar-collapse {
+    padding-right: 15px;
+    padding-left: 15px;
+    overflow-x: visible;
+    -webkit-overflow-scrolling: touch;
+    border-top: 1px solid transparent;
+    -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1);
+    box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1);
+}
+
+.navbar-collapse.in {
+    overflow-y: auto;
+}
+
+/*
+@media (min-width: 768px) {
+  .navbar-collapse {
+    width: auto;
+    border-top: 0;
+    -webkit-box-shadow: none;
+            box-shadow: none;
+  }
+  .navbar-collapse.collapse {
+    display: block !important;
+    height: auto !important;
+    padding-bottom: 0;
+    overflow: visible !important;
+    visibility: visible !important;
+  }
+  .navbar-collapse.in {
+    overflow-y: visible;
+  }
+  .navbar-fixed-top .navbar-collapse,
+  .navbar-static-top .navbar-collapse,
+  .navbar-fixed-bottom .navbar-collapse {
+    padding-right: 0;
+    padding-left: 0;
+  }
+}
+*/
+
+.navbar-fixed-top .navbar-collapse,
+.navbar-fixed-bottom .navbar-collapse {
+    max-height: 340px;
+}
+
+@media (max-device-width: 480px) and (orientation: landscape) {
+
+    .navbar-fixed-top .navbar-collapse,
+    .navbar-fixed-bottom .navbar-collapse {
+        max-height: 200px;
+    }
+}
+
+.container>.navbar-header,
+.container-fluid>.navbar-header,
+.container>.navbar-collapse,
+.container-fluid>.navbar-collapse {
+    margin-right: -15px;
+    margin-left: -15px;
+}
+
+@media (min-width: 768px) {
+
+    .container>.navbar-header,
+    .container-fluid>.navbar-header,
+    .container>.navbar-collapse,
+    .container-fluid>.navbar-collapse {
+        margin-right: 0;
+        margin-left: 0;
+    }
+}
+
+.navbar-static-top {
+    z-index: 1000;
+    border-width: 0 0 1px;
+}
+
+@media (min-width: 768px) {
+    .navbar-static-top {
+        border-radius: 0;
+    }
+}
+
+.navbar-fixed-top,
+.navbar-fixed-bottom {
+    position: fixed;
+    right: 0;
+    left: 0;
+    z-index: 1030;
+}
+
+@media (min-width: 768px) {
+
+    .navbar-fixed-top,
+    .navbar-fixed-bottom {
+        border-radius: 0;
+    }
+}
+
+.navbar-fixed-top {
+    top: 0;
+    border-width: 0 0 1px;
+}
+
+.navbar-fixed-bottom {
+    bottom: 0;
+    margin-bottom: 0;
+    border-width: 1px 0 0;
+}
+
+.navbar-brand {
+    float: left;
+    height: 30px;
+    padding: 6px 15px;
+    font-size: 15px;
+    line-height: 18px;
+}
+
+.navbar-brand:hover,
+.navbar-brand:focus {
+    text-decoration: none;
+}
+
+.navbar-brand>img {
+    display: block;
+}
+
+@media (min-width: 768px) {
+
+    .navbar>.container .navbar-brand,
+    .navbar>.container-fluid .navbar-brand {
+        margin-left: -15px;
+    }
+}
+
+.navbar-toggle {
+    position: relative;
+    float: right;
+    padding: 9px 10px;
+    margin-top: 8px;
+    margin-right: 15px;
+    margin-bottom: 8px;
+    background-color: transparent;
+    background-image: none;
+    border: 1px solid transparent;
+    border-radius: 4px;
+}
+
+.navbar-toggle:focus {
+    outline: 0;
+}
+
+.navbar-toggle .icon-bar {
+    display: block;
+    width: 22px;
+    height: 2px;
+    border-radius: 1px;
+}
+
+.navbar-toggle .icon-bar+.icon-bar {
+    margin-top: 4px;
+}
+
+@media (min-width: 768px) {
+    .navbar-toggle {
+        display: none;
+    }
+}
+
+.navbar-nav {
+    margin: 7.5px -15px;
+}
+
+.navbar-nav>li>a {
+    padding-top: 10px;
+    padding-bottom: 10px;
+    line-height: 20px;
+}
+
+.navbar-nav>li,
+.navbar-nav {
+    float: left !important;
+}
+
+.navbar-nav.navbar-right:last-child {
+    margin-right: -15px !important;
+}
+
+.navbar-right {
+    float: right !important;
+}
+
+/*
+@media (max-width: 767px) {
+  .navbar-nav .open .dropdown-menu {
+    position: static;
+    float: none;
+    width: auto;
+    margin-top: 0;
+    background-color: transparent;
+    border: 0;
+    -webkit-box-shadow: none;
+            box-shadow: none;
+  }
+  .navbar-nav .open .dropdown-menu > li > a,
+  .navbar-nav .open .dropdown-menu .dropdown-header {
+    padding: 5px 15px 5px 25px;
+  }
+  .navbar-nav .open .dropdown-menu > li > a {
+    line-height: 20px;
+  }
+  .navbar-nav .open .dropdown-menu > li > a:hover,
+  .navbar-nav .open .dropdown-menu > li > a:focus {
+    background-image: none;
+  }
+}
+
+  .navbar-nav {
+    float: left;
+    margin: 0;
+  }
+  .navbar-nav > li {
+    float: left;
+  }
+  .navbar-nav > li > a {
+    padding-top: 15px;
+    padding-bottom: 15px;
+  }
+
+.navbar-form {
+  padding: 10px 15px;
+  margin-top: 8px;
+  margin-right: -15px;
+  margin-bottom: 8px;
+  margin-left: -15px;
+  border-top: 1px solid transparent;
+  border-bottom: 1px solid transparent;
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1);
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1);
+}
+@media (min-width: 768px) {
+  .navbar-form .form-group {
+    display: inline-block;
+    margin-bottom: 0;
+    vertical-align: middle;
+  }
+  .navbar-form .form-control {
+    display: inline-block;
+    width: auto;
+    vertical-align: middle;
+  }
+  .navbar-form .form-control-static {
+    display: inline-block;
+  }
+  .navbar-form .input-group {
+    display: inline-table;
+    vertical-align: middle;
+  }
+  .navbar-form .input-group .input-group-addon,
+  .navbar-form .input-group .input-group-btn,
+  .navbar-form .input-group .form-control {
+    width: auto;
+  }
+  .navbar-form .input-group > .form-control {
+    width: 100%;
+  }
+  .navbar-form .control-label {
+    margin-bottom: 0;
+    vertical-align: middle;
+  }
+  .navbar-form .radio,
+  .navbar-form .checkbox {
+    display: inline-block;
+    margin-top: 0;
+    margin-bottom: 0;
+    vertical-align: middle;
+  }
+  .navbar-form .radio label,
+  .navbar-form .checkbox label {
+    padding-left: 0;
+  }
+  .navbar-form .radio input[type="radio"],
+  .navbar-form .checkbox input[type="checkbox"] {
+    position: relative;
+    margin-left: 0;
+  }
+  .navbar-form .has-feedback .form-control-feedback {
+    top: 0;
+  }
+}
+@media (max-width: 767px) {
+  .navbar-form .form-group {
+    margin-bottom: 5px;
+  }
+  .navbar-form .form-group:last-child {
+    margin-bottom: 0;
+  }
+}
+@media (min-width: 768px) {
+  .navbar-form {
+    width: auto;
+    padding-top: 0;
+    padding-bottom: 0;
+    margin-right: 0;
+    margin-left: 0;
+    border: 0;
+    -webkit-box-shadow: none;
+            box-shadow: none;
+  }
+}
+*/
+
+.navbar-nav>li>.dropdown-menu {
+    margin-top: 0;
+    border-top-left-radius: 0;
+    border-top-right-radius: 0;
+}
+
+.navbar-fixed-bottom .navbar-nav>li>.dropdown-menu {
+    border-bottom-right-radius: 0;
+    border-bottom-left-radius: 0;
+}
+
+.navbar-btn {
+    margin-top: 8px;
+    margin-bottom: 8px;
+}
+
+.navbar-btn.btn-sm {
+    margin-top: 10px;
+    margin-bottom: 10px;
+}
+
+.navbar-btn.btn-xs {
+    margin-top: 14px;
+    margin-bottom: 14px;
+}
+
+.navbar-text {
+    margin-top: 15px;
+    margin-bottom: 15px;
+}
+
+.navbar-text {
+    float: left;
+    margin-right: 15px;
+    margin-left: 15px;
+}
+
+
+.navbar-left {
+    float: left !important;
+}
+
+.navbar-right {
+    float: right !important;
+    margin-right: -15px;
+}
+
+.navbar-right~.navbar-right {
+    margin-right: 0;
+}
+
+.navbar-default {
+    background-color: #f8f8f8;
+    border-color: #e7e7e7;
+}
+
+.navbar-default .navbar-brand {
+    color: #777;
+}
+
+.navbar-default .navbar-brand:hover,
+.navbar-default .navbar-brand:focus {
+    color: #5e5e5e;
+    background-color: transparent;
+}
+
+.navbar-default .navbar-text {
+    color: #777;
+}
+
+.navbar-default .navbar-nav>li>a {
+    color: #777;
+}
+
+.navbar-default .navbar-nav>li>a:hover,
+.navbar-default .navbar-nav>li>a:focus {
+    color: #333;
+    background-color: transparent;
+}
+
+.navbar-default .navbar-nav>.active>a,
+.navbar-default .navbar-nav>.active>a:hover,
+.navbar-default .navbar-nav>.active>a:focus {
+    color: #555;
+    background-color: #e7e7e7;
+}
+
+.navbar-default .navbar-nav>.disabled>a,
+.navbar-default .navbar-nav>.disabled>a:hover,
+.navbar-default .navbar-nav>.disabled>a:focus {
+    color: #ccc;
+    background-color: transparent;
+}
+
+.navbar-default .navbar-toggle {
+    border-color: #ddd;
+}
+
+.navbar-default .navbar-toggle:hover,
+.navbar-default .navbar-toggle:focus {
+    background-color: #ddd;
+}
+
+.navbar-default .navbar-toggle .icon-bar {
+    background-color: #888;
+}
+
+.navbar-default .navbar-collapse,
+.navbar-default .navbar-form {
+    border-color: #e7e7e7;
+}
+
+.navbar-default .navbar-nav>.open>a,
+.navbar-default .navbar-nav>.open>a:hover,
+.navbar-default .navbar-nav>.open>a:focus {
+    color: #555;
+    background-color: #e7e7e7;
+}
+
+@media (max-width: 767px) {
+    .navbar-default .navbar-nav .open .dropdown-menu>li>a {
+        color: #777;
+    }
+
+    .navbar-default .navbar-nav .open .dropdown-menu>li>a:hover,
+    .navbar-default .navbar-nav .open .dropdown-menu>li>a:focus {
+        color: #333;
+        background-color: transparent;
+    }
+
+    .navbar-default .navbar-nav .open .dropdown-menu>.active>a,
+    .navbar-default .navbar-nav .open .dropdown-menu>.active>a:hover,
+    .navbar-default .navbar-nav .open .dropdown-menu>.active>a:focus {
+        color: #555;
+        background-color: #e7e7e7;
+    }
+
+    .navbar-default .navbar-nav .open .dropdown-menu>.disabled>a,
+    .navbar-default .navbar-nav .open .dropdown-menu>.disabled>a:hover,
+    .navbar-default .navbar-nav .open .dropdown-menu>.disabled>a:focus {
+        color: #ccc;
+        background-color: transparent;
+    }
+}
+
+.navbar-default .navbar-link {
+    color: #777;
+}
+
+.navbar-default .navbar-link:hover {
+    color: #333;
+}
+
+.navbar-default .btn-link {
+    color: #777;
+}
+
+.navbar-default .btn-link:hover,
+.navbar-default .btn-link:focus {
+    color: #333;
+}
+
+.navbar-default .btn-link[disabled]:hover,
+fieldset[disabled] .navbar-default .btn-link:hover,
+.navbar-default .btn-link[disabled]:focus,
+fieldset[disabled] .navbar-default .btn-link:focus {
+    color: #ccc;
+}
+
+.navbar-inverse {
+    background-color: #336699;
+    border-color: #080808;
+}
+
+.navbar-inverse .navbar-brand {
+    color: #ffffff;
+}
+
+.navbar-inverse .navbar-brand:hover,
+.navbar-inverse .navbar-brand:focus {
+    color: #ffffff;
+    background-color: transparent;
+}
+
+.navbar-inverse .navbar-text {
+    color: #ffffff;
+}
+
+.navbar-inverse .navbar-nav>li>a {
+    color: #ffffff;
+}
+
+.navbar-inverse .navbar-nav>li>a:hover,
+.navbar-inverse .navbar-nav>li>a:focus {
+    color: #ffffff;
+    background-color: transparent;
+}
+
+.navbar-inverse .navbar-nav>.active>a,
+.navbar-inverse .navbar-nav>.active>a:hover,
+.navbar-inverse .navbar-nav>.active>a:focus {
+    color: #fff;
+    background-color: #080808;
+}
+
+.navbar-inverse .navbar-nav>.disabled>a,
+.navbar-inverse .navbar-nav>.disabled>a:hover,
+.navbar-inverse .navbar-nav>.disabled>a:focus {
+    color: #444;
+    background-color: transparent;
+}
+
+.navbar-inverse .navbar-toggle {
+    border-color: #333;
+}
+
+.navbar-inverse .navbar-toggle:hover,
+.navbar-inverse .navbar-toggle:focus {
+    background-color: #333;
+}
+
+.navbar-inverse .navbar-toggle .icon-bar {
+    background-color: #fff;
+}
+
+.navbar-inverse .navbar-collapse,
+.navbar-inverse .navbar-form {
+    border-color: #101010;
+}
+
+.navbar-inverse .navbar-nav>.open>a,
+.navbar-inverse .navbar-nav>.open>a:hover,
+.navbar-inverse .navbar-nav>.open>a:focus {
+    color: #fff;
+    background-color: #080808;
+}
+
+@media (max-width: 767px) {
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.dropdown-header {
+        border-color: #080808;
+    }
+
+    .navbar-inverse .navbar-nav .open .dropdown-menu .divider {
+        background-color: #080808;
+    }
+
+    .navbar-inverse .navbar-nav .open .dropdown-menu>li>a {
+        color: #9d9d9d;
+    }
+
+    .navbar-inverse .navbar-nav .open .dropdown-menu>li>a:hover,
+    .navbar-inverse .navbar-nav .open .dropdown-menu>li>a:focus {
+        color: #fff;
+        background-color: transparent;
+    }
+
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.active>a,
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.active>a:hover,
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.active>a:focus {
+        color: #fff;
+        background-color: #080808;
+    }
+
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.disabled>a,
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.disabled>a:hover,
+    .navbar-inverse .navbar-nav .open .dropdown-menu>.disabled>a:focus {
+        color: #444;
+        background-color: transparent;
+    }
+}
+
+.navbar-inverse .navbar-link {
+    color: #9d9d9d;
+}
+
+.navbar-inverse .navbar-link:hover {
+    color: #fff;
+}
+
+.navbar-inverse .btn-link {
+    color: #9d9d9d;
+}
+
+.navbar-inverse .btn-link:hover,
+.navbar-inverse .btn-link:focus {
+    color: #fff;
+}
+
+.navbar-inverse .btn-link[disabled]:hover,
+fieldset[disabled] .navbar-inverse .btn-link:hover,
+.navbar-inverse .btn-link[disabled]:focus,
+fieldset[disabled] .navbar-inverse .btn-link:focus {
+    color: #444;
+}
+
+.breadcrumb {
+    padding: 8px 15px;
+    margin-bottom: 20px;
+    list-style: none;
+    background-color: #f5f5f5;
+    border-radius: 4px;
+}
+
+.breadcrumb>li {
+    display: inline-block;
+}
+
+.breadcrumb>li+li:before {
+    padding: 0 5px;
+    color: #ccc;
+    content: "/\00a0";
+}
+
+.breadcrumb>.active {
+    color: #777;
+}
+
+.pagination {
+    display: inline-block;
+    padding-left: 0;
+    margin: 20px 0;
+    border-radius: 4px;
+}
+
+.pagination>li {
+    display: inline;
+}
+
+.pagination>li>a,
+.pagination>li>span {
+    position: relative;
+    float: left;
+    padding: 6px 12px;
+    margin-left: -1px;
+    line-height: 1.42857143;
+    color: #428bca;
+    text-decoration: none;
+    background-color: #fff;
+    border: 1px solid #ddd;
+}
+
+.pagination>li:first-child>a,
+.pagination>li:first-child>span {
+    margin-left: 0;
+    border-top-left-radius: 4px;
+    border-bottom-left-radius: 4px;
+}
+
+.pagination>li:last-child>a,
+.pagination>li:last-child>span {
+    border-top-right-radius: 4px;
+    border-bottom-right-radius: 4px;
+}
+
+.pagination>li>a:hover,
+.pagination>li>span:hover,
+.pagination>li>a:focus,
+.pagination>li>span:focus {
+    color: #2a6496;
+    background-color: #eee;
+    border-color: #ddd;
+}
+
+.pagination>.active>a,
+.pagination>.active>span,
+.pagination>.active>a:hover,
+.pagination>.active>span:hover,
+.pagination>.active>a:focus,
+.pagination>.active>span:focus {
+    z-index: 2;
+    color: #fff;
+    cursor: default;
+    background-color: #3071a9;
+    border-color: #428bca;
+}
+
+.pagination>.disabled>span,
+.pagination>.disabled>span:hover,
+.pagination>.disabled>span:focus,
+.pagination>.disabled>a,
+.pagination>.disabled>a:hover,
+.pagination>.disabled>a:focus {
+    color: #777;
+    cursor: not-allowed;
+    background-color: #fff;
+    border-color: #ddd;
+}
+
+.pagination-lg>li>a,
+.pagination-lg>li>span {
+    padding: 10px 16px;
+    font-size: 18px;
+}
+
+.pagination-lg>li:first-child>a,
+.pagination-lg>li:first-child>span {
+    border-top-left-radius: 6px;
+    border-bottom-left-radius: 6px;
+}
+
+.pagination-lg>li:last-child>a,
+.pagination-lg>li:last-child>span {
+    border-top-right-radius: 6px;
+    border-bottom-right-radius: 6px;
+}
+
+.pagination-sm>li>a,
+.pagination-sm>li>span {
+    padding: 5px 10px;
+    font-size: 12px;
+}
+
+.pagination-sm>li:first-child>a,
+.pagination-sm>li:first-child>span {
+    border-top-left-radius: 3px;
+    border-bottom-left-radius: 3px;
+}
+
+.pagination-sm>li:last-child>a,
+.pagination-sm>li:last-child>span {
+    border-top-right-radius: 3px;
+    border-bottom-right-radius: 3px;
+}
+
+.pager {
+    padding-left: 0;
+    margin: 20px 0;
+    text-align: center;
+    list-style: none;
+}
+
+.pager li {
+    display: inline;
+}
+
+.pager li>a,
+.pager li>span {
+    display: inline-block;
+    padding: 5px 14px;
+    background-color: #fff;
+    border: 1px solid #ddd;
+    border-radius: 15px;
+}
+
+.pager li>a:hover,
+.pager li>a:focus {
+    text-decoration: none;
+    background-color: #eee;
+}
+
+.pager .next>a,
+.pager .next>span {
+    float: right;
+}
+
+.pager .previous>a,
+.pager .previous>span {
+    float: left;
+}
+
+.pager .disabled>a,
+.pager .disabled>a:hover,
+.pager .disabled>a:focus,
+.pager .disabled>span {
+    color: #777;
+    cursor: not-allowed;
+    background-color: #fff;
+}
+
+.label {
+    display: inline;
+    padding: .2em .6em .3em;
+    font-size: 75%;
+    font-weight: bold;
+    line-height: 1;
+    color: #fff;
+    text-align: center;
+    white-space: nowrap;
+    vertical-align: baseline;
+    border-radius: .25em;
+}
+
+a.label:hover,
+a.label:focus {
+    color: #fff;
+    text-decoration: none;
+    cursor: pointer;
+}
+
+.label:empty {
+    display: none;
+}
+
+.btn .label {
+    position: relative;
+    top: -1px;
+}
+
+.label-default {
+    background-color: #777;
+}
+
+.label-default[href]:hover,
+.label-default[href]:focus {
+    background-color: #5e5e5e;
+}
+
+.label-primary {
+    background-color: #428bca;
+}
+
+.label-primary[href]:hover,
+.label-primary[href]:focus {
+    background-color: #3071a9;
+}
+
+.label-success {
+    background-color: #5cb85c;
+}
+
+.label-success[href]:hover,
+.label-success[href]:focus {
+    background-color: #449d44;
+}
+
+.label-info {
+    background-color: #5bc0de;
+}
+
+.label-info[href]:hover,
+.label-info[href]:focus {
+    background-color: #31b0d5;
+}
+
+.label-warning {
+    background-color: #f0ad4e;
+}
+
+.label-warning[href]:hover,
+.label-warning[href]:focus {
+    background-color: #ec971f;
+}
+
+.label-danger {
+    background-color: #d9534f;
+}
+
+.label-danger[href]:hover,
+.label-danger[href]:focus {
+    background-color: #c9302c;
+}
+
+.badge {
+    display: inline-block;
+    min-width: 10px;
+    padding: 3px 7px;
+    font-size: 12px;
+    font-weight: bold;
+    line-height: 1;
+    color: #fff;
+    text-align: center;
+    white-space: nowrap;
+    vertical-align: baseline;
+    background-color: #777;
+    border-radius: 10px;
+}
+
+.badge:empty {
+    display: none;
+}
+
+.btn .badge {
+    position: relative;
+    top: -1px;
+}
+
+.btn-xs .badge {
+    top: 0;
+    padding: 1px 5px;
+}
+
+a.badge:hover,
+a.badge:focus {
+    color: #fff;
+    text-decoration: none;
+    cursor: pointer;
+}
+
+a.list-group-item.active>.badge,
+.nav-pills>.active>a>.badge {
+    color: #3071a9;
+    background-color: #fff;
+}
+
+.nav-pills>li>a>.badge {
+    margin-left: 3px;
+}
+
+.jumbotron {
+    margin-bottom: 10px;
+    color: inherit;
+    background-color: #eee;
+}
+
+.jumbotron h1,
+.jumbotron .h1 {
+    color: inherit;
+}
+
+.jumbotron p {
+    margin-bottom: 15px;
+    font-size: 21px;
+    font-weight: 200;
+}
+
+.jumbotron>hr {
+    border-top-color: #d5d5d5;
+}
+
+.container .jumbotron,
+.container-fluid .jumbotron {
+    border-radius: 6px;
+}
+
+.jumbotron .container {
+    max-width: 100%;
+}
+
+/*@media screen and (min-width: 768px) {
+  .jumbotron {
+    padding: 48px 0;
+  }
+  .container .jumbotron {
+    padding-right: 60px;
+    padding-left: 60px;
+  }
+  .jumbotron h1,
+  .jumbotron .h1 {
+    font-size: 63px;
+  }
+}*/
+
+.thumbnail {
+    display: block;
+    padding: 4px;
+    margin-bottom: 20px;
+    line-height: 1.42857143;
+    background-color: #fff;
+    border: 1px solid #ddd;
+    border-radius: 4px;
+    -webkit-transition: border .2s ease-in-out;
+    -o-transition: border .2s ease-in-out;
+    transition: border .2s ease-in-out;
+}
+
+.thumbnail>img,
+.thumbnail a>img {
+    margin-right: auto;
+    margin-left: auto;
+}
+
+a.thumbnail:hover,
+a.thumbnail:focus,
+a.thumbnail.active {
+    border-color: #428bca;
+}
+
+.thumbnail .caption {
+    padding: 9px;
+    color: #333;
+}
+
+.alert {
+    padding: 10px;
+    margin-bottom: 5px;
+    border: 1px solid transparent;
+    border-radius: 4px;
+}
+
+.alert h4 {
+    margin-top: 0;
+    color: inherit;
+}
+
+.alert .alert-link {
+    font-weight: bold;
+}
+
+.alert>p,
+.alert>ul {
+    margin-bottom: 0;
+}
+
+.alert>p+p {
+    margin-top: 5px;
+}
+
+.alert-dismissable,
+.alert-dismissible {
+    padding-right: 35px;
+}
+
+.alert-dismissable .close,
+.alert-dismissible .close {
+    position: relative;
+    top: -2px;
+    right: -21px;
+    color: inherit;
+}
+
+.alert-success {
+    color: #3c763d;
+    background-color: #dff0d8;
+    border-color: #d6e9c6;
+}
+
+.alert-success hr {
+    border-top-color: #c9e2b3;
+}
+
+.alert-success .alert-link {
+    color: #2b542c;
+}
+
+.alert-info {
+    color: #31708f;
+    background-color: #d9edf7;
+    border-color: #bce8f1;
+}
+
+.alert-info hr {
+    border-top-color: #a6e1ec;
+}
+
+.alert-info .alert-link {
+    color: #245269;
+}
+
+.alert-warning {
+    color: #8a6d3b;
+    background-color: #fcf8e3;
+    border-color: #faebcc;
+}
+
+.alert-warning hr {
+    border-top-color: #f7e1b5;
+}
+
+.alert-warning .alert-link {
+    color: #66512c;
+}
+
+.alert-danger {
+    color: #a94442;
+    background-color: #f2dede;
+    border-color: #ebccd1;
+}
+
+.alert-danger hr {
+    border-top-color: #e4b9c0;
+}
+
+.alert-danger .alert-link {
+    color: #843534;
+}
+
+@-webkit-keyframes progress-bar-stripes {
+    from {
+        background-position: 40px 0;
+    }
+
+    to {
+        background-position: 0 0;
+    }
+}
+
+@-o-keyframes progress-bar-stripes {
+    from {
+        background-position: 40px 0;
+    }
+
+    to {
+        background-position: 0 0;
+    }
+}
+
+@keyframes progress-bar-stripes {
+    from {
+        background-position: 40px 0;
+    }
+
+    to {
+        background-position: 0 0;
+    }
+}
+
+.progress {
+    height: 20px;
+    margin-bottom: 20px;
+    overflow: hidden;
+    background-color: #f5f5f5;
+    border-radius: 4px;
+    -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1);
+    box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1);
+}
+
+.progress-bar {
+    float: left;
+    width: 0;
+    height: 100%;
+    font-size: 12px;
+    line-height: 20px;
+    color: #fff;
+    text-align: center;
+    background-color: #428bca;
+    -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .15);
+    box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .15);
+    -webkit-transition: width .6s ease;
+    -o-transition: width .6s ease;
+    transition: width .6s ease;
+}
+
+.progress-striped .progress-bar,
+.progress-bar-striped {
+    background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    -webkit-background-size: 40px 40px;
+    background-size: 40px 40px;
+}
+
+.progress.active .progress-bar,
+.progress-bar.active {
+    -webkit-animation: progress-bar-stripes 2s linear infinite;
+    -o-animation: progress-bar-stripes 2s linear infinite;
+    animation: progress-bar-stripes 2s linear infinite;
+}
+
+.progress-bar-success {
+    background-color: #5cb85c;
+}
+
+.progress-striped .progress-bar-success {
+    background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+
+.progress-bar-info {
+    background-color: #5bc0de;
+}
+
+.progress-striped .progress-bar-info {
+    background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+
+.progress-bar-warning {
+    background-color: #f0ad4e;
+}
+
+.progress-striped .progress-bar-warning {
+    background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+
+.progress-bar-danger {
+    background-color: #d9534f;
+}
+
+.progress-striped .progress-bar-danger {
+    background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+    background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+
+.media {
+    margin-top: 15px;
+}
+
+.media:first-child {
+    margin-top: 0;
+}
+
+.media-right,
+.media>.pull-right {
+    padding-left: 10px;
+}
+
+.media-left,
+.media>.pull-left {
+    padding-right: 10px;
+}
+
+.media-left,
+.media-right,
+.media-body {
+    display: table-cell;
+    vertical-align: top;
+}
+
+.media-middle {
+    vertical-align: middle;
+}
+
+.media-bottom {
+    vertical-align: bottom;
+}
+
+.media-heading {
+    margin-top: 0;
+    margin-bottom: 5px;
+}
+
+.media-list {
+    padding-left: 0;
+    list-style: none;
+}
+
+.list-group {
+    padding-left: 0;
+    margin-bottom: 20px;
+}
+
+.list-group-item {
+    position: relative;
+    display: block;
+    padding: 10px 15px;
+    margin-bottom: -1px;
+    background-color: #fff;
+    border: 1px solid #ddd;
+}
+
+.list-group-item:first-child {
+    border-top-left-radius: 4px;
+    border-top-right-radius: 4px;
+}
+
+.list-group-item:last-child {
+    margin-bottom: 0;
+    border-bottom-right-radius: 4px;
+    border-bottom-left-radius: 4px;
+}
+
+.list-group-item>.badge {
+    float: right;
+}
+
+.list-group-item>.badge+.badge {
+    margin-right: 5px;
+}
+
+a.list-group-item {
+    color: #555;
+}
+
+a.list-group-item .list-group-item-heading {
+    color: #333;
+}
+
+a.list-group-item:hover,
+a.list-group-item:focus {
+    color: #555;
+    text-decoration: none;
+    background-color: #f5f5f5;
+}
+
+.list-group-item.disabled,
+.list-group-item.disabled:hover,
+.list-group-item.disabled:focus {
+    color: #777;
+    cursor: not-allowed;
+    background-color: #eee;
+}
+
+.list-group-item.disabled .list-group-item-heading,
+.list-group-item.disabled:hover .list-group-item-heading,
+.list-group-item.disabled:focus .list-group-item-heading {
+    color: inherit;
+}
+
+.list-group-item.disabled .list-group-item-text,
+.list-group-item.disabled:hover .list-group-item-text,
+.list-group-item.disabled:focus .list-group-item-text {
+    color: #777;
+}
+
+.list-group-item.active,
+.list-group-item.active:hover,
+.list-group-item.active:focus {
+    z-index: 2;
+    color: #fff;
+    background-color: #428bca;
+    border-color: #428bca;
+}
+
+.list-group-item.active .list-group-item-heading,
+.list-group-item.active:hover .list-group-item-heading,
+.list-group-item.active:focus .list-group-item-heading,
+.list-group-item.active .list-group-item-heading>small,
+.list-group-item.active:hover .list-group-item-heading>small,
+.list-group-item.active:focus .list-group-item-heading>small,
+.list-group-item.active .list-group-item-heading>.small,
+.list-group-item.active:hover .list-group-item-heading>.small,
+.list-group-item.active:focus .list-group-item-heading>.small {
+    color: inherit;
+}
+
+.list-group-item.active .list-group-item-text,
+.list-group-item.active:hover .list-group-item-text,
+.list-group-item.active:focus .list-group-item-text {
+    color: #e1edf7;
+}
+
+.list-group-item-success {
+    color: #3c763d;
+    background-color: #dff0d8;
+}
+
+a.list-group-item-success {
+    color: #3c763d;
+}
+
+a.list-group-item-success .list-group-item-heading {
+    color: inherit;
+}
+
+a.list-group-item-success:hover,
+a.list-group-item-success:focus {
+    color: #3c763d;
+    background-color: #d0e9c6;
+}
+
+a.list-group-item-success.active,
+a.list-group-item-success.active:hover,
+a.list-group-item-success.active:focus {
+    color: #fff;
+    background-color: #3c763d;
+    border-color: #3c763d;
+}
+
+.list-group-item-info {
+    color: #31708f;
+    background-color: #d9edf7;
+}
+
+a.list-group-item-info {
+    color: #31708f;
+}
+
+a.list-group-item-info .list-group-item-heading {
+    color: inherit;
+}
+
+a.list-group-item-info:hover,
+a.list-group-item-info:focus {
+    color: #31708f;
+    background-color: #c4e3f3;
+}
+
+a.list-group-item-info.active,
+a.list-group-item-info.active:hover,
+a.list-group-item-info.active:focus {
+    color: #fff;
+    background-color: #31708f;
+    border-color: #31708f;
+}
+
+.list-group-item-warning {
+    color: #8a6d3b;
+    background-color: #fcf8e3;
+}
+
+a.list-group-item-warning {
+    color: #8a6d3b;
+}
+
+a.list-group-item-warning .list-group-item-heading {
+    color: inherit;
+}
+
+a.list-group-item-warning:hover,
+a.list-group-item-warning:focus {
+    color: #8a6d3b;
+    background-color: #faf2cc;
+}
+
+a.list-group-item-warning.active,
+a.list-group-item-warning.active:hover,
+a.list-group-item-warning.active:focus {
+    color: #fff;
+    background-color: #8a6d3b;
+    border-color: #8a6d3b;
+}
+
+.list-group-item-danger {
+    color: #a94442;
+    background-color: #f2dede;
+}
+
+a.list-group-item-danger {
+    color: #a94442;
+}
+
+a.list-group-item-danger .list-group-item-heading {
+    color: inherit;
+}
+
+a.list-group-item-danger:hover,
+a.list-group-item-danger:focus {
+    color: #a94442;
+    background-color: #ebcccc;
+}
+
+a.list-group-item-danger.active,
+a.list-group-item-danger.active:hover,
+a.list-group-item-danger.active:focus {
+    color: #fff;
+    background-color: #a94442;
+    border-color: #a94442;
+}
+
+.list-group-item-heading {
+    margin-top: 0;
+    margin-bottom: 5px;
+}
+
+.list-group-item-text {
+    margin-bottom: 0;
+    line-height: 1.3;
+}
+
+.panel {
+    margin-bottom: 20px;
+    background-color: #fff;
+    border: 1px solid transparent;
+    border-radius: 4px;
+    -webkit-box-shadow: 0 1px 1px rgba(0, 0, 0, .05);
+    box-shadow: 0 1px 1px rgba(0, 0, 0, .05);
+}
+
+.panel-body {
+    padding: 15px;
+}
+
+.panel-heading {
+    padding: 10px 15px;
+    border-bottom: 1px solid transparent;
+    border-top-left-radius: 3px;
+    border-top-right-radius: 3px;
+    cursor: pointer;
+}
+
+.panel-heading>.dropdown .dropdown-toggle {
+    color: inherit;
+}
+
+.panel-title {
+    margin-top: 0;
+    margin-bottom: 0;
+    font-size: 16px;
+    color: inherit;
+}
+
+.panel-title>a {
+    color: inherit;
+}
+
+.panel-footer {
+    padding: 10px 15px;
+    background-color: #f5f5f5;
+    border-top: 1px solid #ddd;
+    border-bottom-right-radius: 3px;
+    border-bottom-left-radius: 3px;
+}
+
+.panel>.list-group,
+.panel>.panel-collapse>.list-group {
+    margin-bottom: 0;
+}
+
+.panel>.list-group .list-group-item,
+.panel>.panel-collapse>.list-group .list-group-item {
+    border-width: 1px 0;
+    border-radius: 0;
+}
+
+.panel>.list-group:first-child .list-group-item:first-child,
+.panel>.panel-collapse>.list-group:first-child .list-group-item:first-child {
+    border-top: 0;
+    border-top-left-radius: 3px;
+    border-top-right-radius: 3px;
+}
+
+.panel>.list-group:last-child .list-group-item:last-child,
+.panel>.panel-collapse>.list-group:last-child .list-group-item:last-child {
+    border-bottom: 0;
+    border-bottom-right-radius: 3px;
+    border-bottom-left-radius: 3px;
+}
+
+.panel-heading+.list-group .list-group-item:first-child {
+    border-top-width: 0;
+}
+
+.list-group+.panel-footer {
+    border-top-width: 0;
+}
+
+.panel>.table,
+.panel>.table-responsive>.table,
+.panel>.panel-collapse>.table {
+    margin-bottom: 0;
+}
+
+.panel>.table caption,
+.panel>.table-responsive>.table caption,
+.panel>.panel-collapse>.table caption {
+    padding-right: 15px;
+    padding-left: 15px;
+}
+
+.panel>.table:first-child,
+.panel>.table-responsive:first-child>.table:first-child {
+    border-top-left-radius: 3px;
+    border-top-right-radius: 3px;
+}
+
+.panel>.table:first-child>thead:first-child>tr:first-child,
+.panel>.table-responsive:first-child>.table:first-child>thead:first-child>tr:first-child,
+.panel>.table:first-child>tbody:first-child>tr:first-child,
+.panel>.table-responsive:first-child>.table:first-child>tbody:first-child>tr:first-child {
+    border-top-left-radius: 3px;
+    border-top-right-radius: 3px;
+}
+
+.panel>.table:first-child>thead:first-child>tr:first-child td:first-child,
+.panel>.table-responsive:first-child>.table:first-child>thead:first-child>tr:first-child td:first-child,
+.panel>.table:first-child>tbody:first-child>tr:first-child td:first-child,
+.panel>.table-responsive:first-child>.table:first-child>tbody:first-child>tr:first-child td:first-child,
+.panel>.table:first-child>thead:first-child>tr:first-child th:first-child,
+.panel>.table-responsive:first-child>.table:first-child>thead:first-child>tr:first-child th:first-child,
+.panel>.table:first-child>tbody:first-child>tr:first-child th:first-child,
+.panel>.table-responsive:first-child>.table:first-child>tbody:first-child>tr:first-child th:first-child {
+    border-top-left-radius: 3px;
+}
+
+.panel>.table:first-child>thead:first-child>tr:first-child td:last-child,
+.panel>.table-responsive:first-child>.table:first-child>thead:first-child>tr:first-child td:last-child,
+.panel>.table:first-child>tbody:first-child>tr:first-child td:last-child,
+.panel>.table-responsive:first-child>.table:first-child>tbody:first-child>tr:first-child td:last-child,
+.panel>.table:first-child>thead:first-child>tr:first-child th:last-child,
+.panel>.table-responsive:first-child>.table:first-child>thead:first-child>tr:first-child th:last-child,
+.panel>.table:first-child>tbody:first-child>tr:first-child th:last-child,
+.panel>.table-responsive:first-child>.table:first-child>tbody:first-child>tr:first-child th:last-child {
+    border-top-right-radius: 3px;
+}
+
+.panel>.table:last-child,
+.panel>.table-responsive:last-child>.table:last-child {
+    border-bottom-right-radius: 3px;
+    border-bottom-left-radius: 3px;
+}
+
+.panel>.table:last-child>tbody:last-child>tr:last-child,
+.panel>.table-responsive:last-child>.table:last-child>tbody:last-child>tr:last-child,
+.panel>.table:last-child>tfoot:last-child>tr:last-child,
+.panel>.table-responsive:last-child>.table:last-child>tfoot:last-child>tr:last-child {
+    border-bottom-right-radius: 3px;
+    border-bottom-left-radius: 3px;
+}
+
+.panel>.table:last-child>tbody:last-child>tr:last-child td:first-child,
+.panel>.table-responsive:last-child>.table:last-child>tbody:last-child>tr:last-child td:first-child,
+.panel>.table:last-child>tfoot:last-child>tr:last-child td:first-child,
+.panel>.table-responsive:last-child>.table:last-child>tfoot:last-child>tr:last-child td:first-child,
+.panel>.table:last-child>tbody:last-child>tr:last-child th:first-child,
+.panel>.table-responsive:last-child>.table:last-child>tbody:last-child>tr:last-child th:first-child,
+.panel>.table:last-child>tfoot:last-child>tr:last-child th:first-child,
+.panel>.table-responsive:last-child>.table:last-child>tfoot:last-child>tr:last-child th:first-child {
+    border-bottom-left-radius: 3px;
+}
+
+.panel>.table:last-child>tbody:last-child>tr:last-child td:last-child,
+.panel>.table-responsive:last-child>.table:last-child>tbody:last-child>tr:last-child td:last-child,
+.panel>.table:last-child>tfoot:last-child>tr:last-child td:last-child,
+.panel>.table-responsive:last-child>.table:last-child>tfoot:last-child>tr:last-child td:last-child,
+.panel>.table:last-child>tbody:last-child>tr:last-child th:last-child,
+.panel>.table-responsive:last-child>.table:last-child>tbody:last-child>tr:last-child th:last-child,
+.panel>.table:last-child>tfoot:last-child>tr:last-child th:last-child,
+.panel>.table-responsive:last-child>.table:last-child>tfoot:last-child>tr:last-child th:last-child {
+    border-bottom-right-radius: 3px;
+}
+
+.panel>.panel-body+.table,
+.panel>.panel-body+.table-responsive,
+.panel>.table+.panel-body,
+.panel>.table-responsive+.panel-body {
+    border-top: 1px solid #ddd;
+}
+
+.panel>.table>tbody:first-child>tr:first-child th,
+.panel>.table>tbody:first-child>tr:first-child td {
+    border-top: 0;
+}
+
+.panel>.table-bordered,
+.panel>.table-responsive>.table-bordered {
+    border: 0;
+}
+
+.panel>.table-bordered>thead>tr>th:first-child,
+.panel>.table-responsive>.table-bordered>thead>tr>th:first-child,
+.panel>.table-bordered>tbody>tr>th:first-child,
+.panel>.table-responsive>.table-bordered>tbody>tr>th:first-child,
+.panel>.table-bordered>tfoot>tr>th:first-child,
+.panel>.table-responsive>.table-bordered>tfoot>tr>th:first-child,
+.panel>.table-bordered>thead>tr>td:first-child,
+.panel>.table-responsive>.table-bordered>thead>tr>td:first-child,
+.panel>.table-bordered>tbody>tr>td:first-child,
+.panel>.table-responsive>.table-bordered>tbody>tr>td:first-child,
+.panel>.table-bordered>tfoot>tr>td:first-child,
+.panel>.table-responsive>.table-bordered>tfoot>tr>td:first-child {
+    border-left: 0;
+}
+
+.panel>.table-bordered>thead>tr>th:last-child,
+.panel>.table-responsive>.table-bordered>thead>tr>th:last-child,
+.panel>.table-bordered>tbody>tr>th:last-child,
+.panel>.table-responsive>.table-bordered>tbody>tr>th:last-child,
+.panel>.table-bordered>tfoot>tr>th:last-child,
+.panel>.table-responsive>.table-bordered>tfoot>tr>th:last-child,
+.panel>.table-bordered>thead>tr>td:last-child,
+.panel>.table-responsive>.table-bordered>thead>tr>td:last-child,
+.panel>.table-bordered>tbody>tr>td:last-child,
+.panel>.table-responsive>.table-bordered>tbody>tr>td:last-child,
+.panel>.table-bordered>tfoot>tr>td:last-child,
+.panel>.table-responsive>.table-bordered>tfoot>tr>td:last-child {
+    border-right: 0;
+}
+
+.panel>.table-bordered>thead>tr:first-child>td,
+.panel>.table-responsive>.table-bordered>thead>tr:first-child>td,
+.panel>.table-bordered>tbody>tr:first-child>td,
+.panel>.table-responsive>.table-bordered>tbody>tr:first-child>td,
+.panel>.table-bordered>thead>tr:first-child>th,
+.panel>.table-responsive>.table-bordered>thead>tr:first-child>th,
+.panel>.table-bordered>tbody>tr:first-child>th,
+.panel>.table-responsive>.table-bordered>tbody>tr:first-child>th {
+    border-bottom: 0;
+}
+
+.panel>.table-bordered>tbody>tr:last-child>td,
+.panel>.table-responsive>.table-bordered>tbody>tr:last-child>td,
+.panel>.table-bordered>tfoot>tr:last-child>td,
+.panel>.table-responsive>.table-bordered>tfoot>tr:last-child>td,
+.panel>.table-bordered>tbody>tr:last-child>th,
+.panel>.table-responsive>.table-bordered>tbody>tr:last-child>th,
+.panel>.table-bordered>tfoot>tr:last-child>th,
+.panel>.table-responsive>.table-bordered>tfoot>tr:last-child>th {
+    border-bottom: 0;
+}
+
+.panel>.table-responsive {
+    margin-bottom: 0;
+    border: 0;
+}
+
+.panel-group {
+    margin-bottom: 20px;
+}
+
+.panel-group .panel {
+    margin-bottom: 0;
+    border-radius: 4px;
+}
+
+.panel-group .panel+.panel {
+    margin-top: 5px;
+}
+
+.panel-group .panel-heading {
+    border-bottom: 0;
+}
+
+.panel-group .panel-heading+.panel-collapse>.panel-body,
+.panel-group .panel-heading+.panel-collapse>.list-group {
+    border-top: 1px solid #ddd;
+}
+
+.panel-group .panel-footer {
+    border-top: 0;
+}
+
+.panel-group .panel-footer+.panel-collapse .panel-body {
+    border-bottom: 1px solid #ddd;
+}
+
+.panel-default {
+    border-color: #ddd;
+}
+
+.panel-default>.panel-heading {
+    color: #333;
+    background-color: #f5f5f5;
+    border-color: #ddd;
+}
+
+.panel-default>.panel-heading+.panel-collapse>.panel-body {
+    border-top-color: #ddd;
+}
+
+.panel-default>.panel-heading .badge {
+    color: #f5f5f5;
+    background-color: #333;
+}
+
+.panel-default>.panel-footer+.panel-collapse>.panel-body {
+    border-bottom-color: #ddd;
+}
+
+.panel-primary {
+    border-color: #428bca;
+}
+
+.panel-primary>.panel-heading {
+    color: #fff;
+    background-color: #428bca;
+    border-color: #428bca;
+}
+
+.panel-primary>.panel-heading+.panel-collapse>.panel-body {
+    border-top-color: #428bca;
+}
+
+.panel-primary>.panel-heading .badge {
+    color: #428bca;
+    background-color: #fff;
+}
+
+.panel-primary>.panel-footer+.panel-collapse>.panel-body {
+    border-bottom-color: #428bca;
+}
+
+.panel-success {
+    border-color: #d6e9c6;
+}
+
+.panel-success>.panel-heading {
+    color: #3c763d;
+    background-color: #dff0d8;
+    border-color: #d6e9c6;
+}
+
+.panel-success>.panel-heading+.panel-collapse>.panel-body {
+    border-top-color: #d6e9c6;
+}
+
+.panel-success>.panel-heading .badge {
+    color: #dff0d8;
+    background-color: #3c763d;
+}
+
+.panel-success>.panel-footer+.panel-collapse>.panel-body {
+    border-bottom-color: #d6e9c6;
+}
+
+.panel-info {
+    border-color: #bce8f1;
+}
+
+.panel-info>.panel-heading {
+    color: #31708f;
+    background-color: #d9edf7;
+    border-color: #bce8f1;
+}
+
+.panel-info>.panel-heading+.panel-collapse>.panel-body {
+    border-top-color: #bce8f1;
+}
+
+.panel-info>.panel-heading .badge {
+    color: #d9edf7;
+    background-color: #31708f;
+}
+
+.panel-info>.panel-footer+.panel-collapse>.panel-body {
+    border-bottom-color: #bce8f1;
+}
+
+.panel-warning {
+    border-color: #faebcc;
+}
+
+.panel-warning>.panel-heading {
+    color: #8a6d3b;
+    background-color: #fcf8e3;
+    border-color: #faebcc;
+}
+
+.panel-warning>.panel-heading+.panel-collapse>.panel-body {
+    border-top-color: #faebcc;
+}
+
+.panel-warning>.panel-heading .badge {
+    color: #fcf8e3;
+    background-color: #8a6d3b;
+}
+
+.panel-warning>.panel-footer+.panel-collapse>.panel-body {
+    border-bottom-color: #faebcc;
+}
+
+.panel-danger {
+    border-color: #ebccd1;
+}
+
+.panel-danger>.panel-heading {
+    color: #a94442;
+    background-color: #f2dede;
+    border-color: #ebccd1;
+}
+
+.panel-danger>.panel-heading+.panel-collapse>.panel-body {
+    border-top-color: #ebccd1;
+}
+
+.panel-danger>.panel-heading .badge {
+    color: #f2dede;
+    background-color: #a94442;
+}
+
+.panel-danger>.panel-footer+.panel-collapse>.panel-body {
+    border-bottom-color: #ebccd1;
+}
+
+.embed-responsive {
+    position: relative;
+    display: block;
+    height: 0;
+    padding: 0;
+    overflow: hidden;
+}
+
+.embed-responsive .embed-responsive-item,
+.embed-responsive iframe,
+.embed-responsive embed,
+.embed-responsive object,
+.embed-responsive video {
+    position: absolute;
+    top: 0;
+    bottom: 0;
+    left: 0;
+    width: 100%;
+    height: 100%;
+    border: 0;
+}
+
+.embed-responsive.embed-responsive-16by9 {
+    padding-bottom: 56.25%;
+}
+
+.embed-responsive.embed-responsive-4by3 {
+    padding-bottom: 75%;
+}
+
+.well {
+    min-height: 20px;
+    padding: 19px;
+    margin-bottom: 20px;
+    background-color: #f5f5f5;
+    border: 1px solid #e3e3e3;
+    border-radius: 4px;
+    -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .05);
+    box-shadow: inset 0 1px 1px rgba(0, 0, 0, .05);
+}
+
+.well blockquote {
+    border-color: #ddd;
+    border-color: rgba(0, 0, 0, .15);
+}
+
+.well-lg {
+    padding: 24px;
+    border-radius: 6px;
+}
+
+.well-sm {
+    padding: 9px;
+    border-radius: 3px;
+}
+
+.close {
+    float: right;
+    font-size: 21px;
+    font-weight: bold;
+    line-height: 1;
+    color: #000;
+    text-shadow: 0 1px 0 #fff;
+    filter: alpha(opacity=20);
+    opacity: .2;
+}
+
+.close:hover,
+.close:focus {
+    color: #000;
+    text-decoration: none;
+    cursor: pointer;
+    filter: alpha(opacity=50);
+    opacity: .5;
+}
+
+button.close {
+    -webkit-appearance: none;
+    padding: 0;
+    cursor: pointer;
+    background: transparent;
+    border: 0;
+}
+
+.modal-open {
+    overflow: hidden;
+}
+
+.modal {
+    position: fixed;
+    top: 0;
+    right: 0;
+    bottom: 0;
+    left: 0;
+    z-index: 1040;
+    display: none;
+    overflow: hidden;
+    -webkit-overflow-scrolling: touch;
+    outline: 0;
+}
+
+.modal.fade .modal-dialog {
+    -webkit-transition: -webkit-transform .3s ease-out;
+    -o-transition: -o-transform .3s ease-out;
+    transition: transform .3s ease-out;
+    -webkit-transform: translate(0, -25%);
+    -ms-transform: translate(0, -25%);
+    -o-transform: translate(0, -25%);
+    transform: translate(0, -25%);
+}
+
+.modal.in .modal-dialog {
+    -webkit-transform: translate(0, 0);
+    -ms-transform: translate(0, 0);
+    -o-transform: translate(0, 0);
+    transform: translate(0, 0);
+}
+
+.modal-open .modal {
+    overflow-x: hidden;
+    overflow-y: auto;
+}
+
+.modal-dialog {
+    position: relative;
+    width: auto;
+    margin: 10px;
+}
+
+.modal-content {
+    position: relative;
+    background-color: #fff;
+    -webkit-background-clip: padding-box;
+    background-clip: padding-box;
+    border: 1px solid #999;
+    border: 1px solid rgba(0, 0, 0, .2);
+    border-radius: 6px;
+    outline: 0;
+    -webkit-box-shadow: 0 3px 9px rgba(0, 0, 0, .5);
+    box-shadow: 0 3px 9px rgba(0, 0, 0, .5);
+}
+
+.modal-backdrop {
+    position: fixed;
+    top: 0;
+    right: 0;
+    bottom: 0;
+    left: 0;
+    background-color: #000;
+}
+
+.modal-backdrop.fade {
+    filter: alpha(opacity=0);
+    opacity: 0;
+}
+
+.modal-backdrop.in {
+    filter: alpha(opacity=50);
+    opacity: .5;
+}
+
+.modal-header {
+    min-height: 16.42857143px;
+    padding: 15px;
+    border-bottom: 1px solid #e5e5e5;
+}
+
+.modal-header .close {
+    margin-top: -2px;
+}
+
+.modal-title {
+    margin: 0;
+    line-height: 1.42857143;
+}
+
+.modal-body {
+    position: relative;
+    padding: 15px;
+}
+
+.modal-footer {
+    padding: 15px;
+    text-align: right;
+    border-top: 1px solid #e5e5e5;
+}
+
+.modal-footer .btn+.btn {
+    margin-bottom: 0;
+    margin-left: 5px;
+}
+
+.modal-footer .btn-group .btn+.btn {
+    margin-left: -1px;
+}
+
+.modal-footer .btn-block+.btn-block {
+    margin-left: 0;
+}
+
+.modal-scrollbar-measure {
+    position: absolute;
+    top: -9999px;
+    width: 50px;
+    height: 50px;
+    overflow: scroll;
+}
+
+@media (min-width: 768px) {
+    .modal-dialog {
+        width: 600px;
+        margin: 30px auto;
+    }
+
+    .modal-content {
+        -webkit-box-shadow: 0 5px 15px rgba(0, 0, 0, .5);
+        box-shadow: 0 5px 15px rgba(0, 0, 0, .5);
+    }
+
+    .modal-sm {
+        width: 300px;
+    }
+}
+
+@media (min-width: 992px) {
+    .modal-lg {
+        width: 900px;
+    }
+}
+
+.tooltip {
+    position: absolute;
+    z-index: 1070;
+    display: block;
+    font-size: 12px;
+    line-height: 1.4;
+    visibility: visible;
+    filter: alpha(opacity=0);
+    opacity: 0;
+}
+
+.tooltip.in {
+    filter: alpha(opacity=90);
+    opacity: .9;
+}
+
+.tooltip.top {
+    padding: 5px 0;
+    margin-top: -3px;
+}
+
+.tooltip.right {
+    padding: 0 5px;
+    margin-left: 3px;
+}
+
+.tooltip.bottom {
+    padding: 5px 0;
+    margin-top: 3px;
+}
+
+.tooltip.left {
+    padding: 0 5px;
+    margin-left: -3px;
+}
+
+.tooltip-inner {
+    max-width: 200px;
+    padding: 3px 8px;
+    color: #fff;
+    text-align: center;
+    text-decoration: none;
+    background-color: #000;
+    border-radius: 4px;
+}
+
+.tooltip-arrow {
+    position: absolute;
+    width: 0;
+    height: 0;
+    border-color: transparent;
+    border-style: solid;
+}
+
+.tooltip.top .tooltip-arrow {
+    bottom: 0;
+    left: 50%;
+    margin-left: -5px;
+    border-width: 5px 5px 0;
+    border-top-color: #000;
+}
+
+.tooltip.top-left .tooltip-arrow {
+    bottom: 0;
+    left: 5px;
+    border-width: 5px 5px 0;
+    border-top-color: #000;
+}
+
+.tooltip.top-right .tooltip-arrow {
+    right: 5px;
+    bottom: 0;
+    border-width: 5px 5px 0;
+    border-top-color: #000;
+}
+
+.tooltip.right .tooltip-arrow {
+    top: 50%;
+    left: 0;
+    margin-top: -5px;
+    border-width: 5px 5px 5px 0;
+    border-right-color: #000;
+}
+
+.tooltip.left .tooltip-arrow {
+    top: 50%;
+    right: 0;
+    margin-top: -5px;
+    border-width: 5px 0 5px 5px;
+    border-left-color: #000;
+}
+
+.tooltip.bottom .tooltip-arrow {
+    top: 0;
+    left: 50%;
+    margin-left: -5px;
+    border-width: 0 5px 5px;
+    border-bottom-color: #000;
+}
+
+.tooltip.bottom-left .tooltip-arrow {
+    top: 0;
+    left: 5px;
+    border-width: 0 5px 5px;
+    border-bottom-color: #000;
+}
+
+.tooltip.bottom-right .tooltip-arrow {
+    top: 0;
+    right: 5px;
+    border-width: 0 5px 5px;
+    border-bottom-color: #000;
+}
+
+.popover {
+    position: absolute;
+    top: 0;
+    left: 0;
+    z-index: 1060;
+    display: none;
+    max-width: 276px;
+    padding: 1px;
+    font-size: 14px;
+    font-weight: normal;
+    line-height: 1.42857143;
+    text-align: left;
+    white-space: normal;
+    background-color: #fff;
+    -webkit-background-clip: padding-box;
+    background-clip: padding-box;
+    border: 1px solid #ccc;
+    border: 1px solid rgba(0, 0, 0, .2);
+    border-radius: 6px;
+    -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, .2);
+    box-shadow: 0 5px 10px rgba(0, 0, 0, .2);
+}
+
+.popover.top {
+    margin-top: -10px;
+}
+
+.popover.right {
+    margin-left: 10px;
+}
+
+.popover.bottom {
+    margin-top: 10px;
+}
+
+.popover.left {
+    margin-left: -10px;
+}
+
+.popover-title {
+    padding: 8px 14px;
+    margin: 0;
+    font-size: 14px;
+    background-color: #f7f7f7;
+    border-bottom: 1px solid #ebebeb;
+    border-radius: 5px 5px 0 0;
+}
+
+.popover-content {
+    padding: 9px 14px;
+}
+
+.popover>.arrow,
+.popover>.arrow:after {
+    position: absolute;
+    display: block;
+    width: 0;
+    height: 0;
+    border-color: transparent;
+    border-style: solid;
+}
+
+.popover>.arrow {
+    border-width: 11px;
+}
+
+.popover>.arrow:after {
+    content: "";
+    border-width: 10px;
+}
+
+.popover.top>.arrow {
+    bottom: -11px;
+    left: 50%;
+    margin-left: -11px;
+    border-top-color: #999;
+    border-top-color: rgba(0, 0, 0, .25);
+    border-bottom-width: 0;
+}
+
+.popover.top>.arrow:after {
+    bottom: 1px;
+    margin-left: -10px;
+    content: " ";
+    border-top-color: #fff;
+    border-bottom-width: 0;
+}
+
+.popover.right>.arrow {
+    top: 50%;
+    left: -11px;
+    margin-top: -11px;
+    border-right-color: #999;
+    border-right-color: rgba(0, 0, 0, .25);
+    border-left-width: 0;
+}
+
+.popover.right>.arrow:after {
+    bottom: -10px;
+    left: 1px;
+    content: " ";
+    border-right-color: #fff;
+    border-left-width: 0;
+}
+
+.popover.bottom>.arrow {
+    top: -11px;
+    left: 50%;
+    margin-left: -11px;
+    border-top-width: 0;
+    border-bottom-color: #999;
+    border-bottom-color: rgba(0, 0, 0, .25);
+}
+
+.popover.bottom>.arrow:after {
+    top: 1px;
+    margin-left: -10px;
+    content: " ";
+    border-top-width: 0;
+    border-bottom-color: #fff;
+}
+
+.popover.left>.arrow {
+    top: 50%;
+    right: -11px;
+    margin-top: -11px;
+    border-right-width: 0;
+    border-left-color: #999;
+    border-left-color: rgba(0, 0, 0, .25);
+}
+
+.popover.left>.arrow:after {
+    right: 1px;
+    bottom: -10px;
+    content: " ";
+    border-right-width: 0;
+    border-left-color: #fff;
+}
+
+.carousel {
+    position: relative;
+}
+
+.carousel-inner {
+    position: relative;
+    width: 100%;
+    overflow: hidden;
+}
+
+.carousel-inner>.item {
+    position: relative;
+    display: none;
+    -webkit-transition: .6s ease-in-out left;
+    -o-transition: .6s ease-in-out left;
+    transition: .6s ease-in-out left;
+}
+
+.carousel-inner>.item>img,
+.carousel-inner>.item>a>img {
+    line-height: 1;
+}
+
+@media all and (transform-3d),
+(-webkit-transform-3d) {
+    .carousel-inner>.item {
+        -webkit-transition: -webkit-transform .6s ease-in-out;
+        -o-transition: -o-transform .6s ease-in-out;
+        transition: transform .6s ease-in-out;
+
+        -webkit-backface-visibility: hidden;
+        backface-visibility: hidden;
+        -webkit-perspective: 1000;
+        perspective: 1000;
+    }
+
+    .carousel-inner>.item.next,
+    .carousel-inner>.item.active.right {
+        left: 0;
+        -webkit-transform: translate3d(100%, 0, 0);
+        transform: translate3d(100%, 0, 0);
+    }
+
+    .carousel-inner>.item.prev,
+    .carousel-inner>.item.active.left {
+        left: 0;
+        -webkit-transform: translate3d(-100%, 0, 0);
+        transform: translate3d(-100%, 0, 0);
+    }
+
+    .carousel-inner>.item.next.left,
+    .carousel-inner>.item.prev.right,
+    .carousel-inner>.item.active {
+        left: 0;
+        -webkit-transform: translate3d(0, 0, 0);
+        transform: translate3d(0, 0, 0);
+    }
+}
+
+.carousel-inner>.active,
+.carousel-inner>.next,
+.carousel-inner>.prev {
+    display: block;
+}
+
+.carousel-inner>.active {
+    left: 0;
+}
+
+.carousel-inner>.next,
+.carousel-inner>.prev {
+    position: absolute;
+    top: 0;
+    width: 100%;
+}
+
+.carousel-inner>.next {
+    left: 100%;
+}
+
+.carousel-inner>.prev {
+    left: -100%;
+}
+
+.carousel-inner>.next.left,
+.carousel-inner>.prev.right {
+    left: 0;
+}
+
+.carousel-inner>.active.left {
+    left: -100%;
+}
+
+.carousel-inner>.active.right {
+    left: 100%;
+}
+
+.carousel-control {
+    position: absolute;
+    top: 0;
+    bottom: 0;
+    left: 0;
+    width: 15%;
+    font-size: 20px;
+    color: #fff;
+    text-align: center;
+    text-shadow: 0 1px 2px rgba(0, 0, 0, .6);
+    filter: alpha(opacity=50);
+    opacity: .5;
+}
+
+.carousel-control.left {
+    background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
+    background-image: -o-linear-gradient(left, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
+    background-image: -webkit-gradient(linear, left top, right top, from(rgba(0, 0, 0, .5)), to(rgba(0, 0, 0, .0001)));
+    background-image: linear-gradient(to right, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
+    filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#80000000', endColorstr='#00000000', GradientType=1);
+    background-repeat: repeat-x;
+}
+
+.carousel-control.right {
+    right: 0;
+    left: auto;
+    background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
+    background-image: -o-linear-gradient(left, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
+    background-image: -webkit-gradient(linear, left top, right top, from(rgba(0, 0, 0, .0001)), to(rgba(0, 0, 0, .5)));
+    background-image: linear-gradient(to right, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
+    filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#00000000', endColorstr='#80000000', GradientType=1);
+    background-repeat: repeat-x;
+}
+
+.carousel-control:hover,
+.carousel-control:focus {
+    color: #fff;
+    text-decoration: none;
+    filter: alpha(opacity=90);
+    outline: 0;
+    opacity: .9;
+}
+
+.carousel-control .icon-prev,
+.carousel-control .icon-next,
+.carousel-control .glyphicon-chevron-left,
+.carousel-control .glyphicon-chevron-right {
+    position: absolute;
+    top: 50%;
+    z-index: 5;
+    display: inline-block;
+}
+
+.carousel-control .icon-prev,
+.carousel-control .glyphicon-chevron-left {
+    left: 50%;
+    margin-left: -10px;
+}
+
+.carousel-control .icon-next,
+.carousel-control .glyphicon-chevron-right {
+    right: 50%;
+    margin-right: -10px;
+}
+
+.carousel-control .icon-prev,
+.carousel-control .icon-next {
+    width: 20px;
+    height: 20px;
+    margin-top: -10px;
+    font-family: serif;
+}
+
+.carousel-control .icon-prev:before {
+    content: '\2039';
+}
+
+.carousel-control .icon-next:before {
+    content: '\203a';
+}
+
+.carousel-indicators {
+    position: absolute;
+    bottom: 10px;
+    left: 50%;
+    z-index: 15;
+    width: 60%;
+    padding-left: 0;
+    margin-left: -30%;
+    text-align: center;
+    list-style: none;
+}
+
+.carousel-indicators li {
+    display: inline-block;
+    width: 10px;
+    height: 10px;
+    margin: 1px;
+    text-indent: -999px;
+    cursor: pointer;
+    background-color: #000 \9;
+    background-color: rgba(0, 0, 0, 0);
+    border: 1px solid #fff;
+    border-radius: 10px;
+}
+
+.carousel-indicators .active {
+    width: 12px;
+    height: 12px;
+    margin: 0;
+    background-color: #fff;
+}
+
+.carousel-caption {
+    position: absolute;
+    right: 15%;
+    bottom: 20px;
+    left: 15%;
+    z-index: 10;
+    padding-top: 20px;
+    padding-bottom: 20px;
+    color: #fff;
+    text-align: center;
+    text-shadow: 0 1px 2px rgba(0, 0, 0, .6);
+}
+
+.carousel-caption .btn {
+    text-shadow: none;
+}
+
+/*
+@media screen and (min-width: 768px) {
+  .carousel-control .glyphicon-chevron-left,
+  .carousel-control .glyphicon-chevron-right,
+  .carousel-control .icon-prev,
+  .carousel-control .icon-next {
+    width: 30px;
+    height: 30px;
+    margin-top: -15px;
+    font-size: 30px;
+  }
+  .carousel-control .glyphicon-chevron-left,
+  .carousel-control .icon-prev {
+    margin-left: -15px;
+  }
+  .carousel-control .glyphicon-chevron-right,
+  .carousel-control .icon-next {
+    margin-right: -15px;
+  }
+  .carousel-caption {
+    right: 20%;
+    left: 20%;
+    padding-bottom: 30px;
+  }
+  .carousel-indicators {
+    bottom: 20px;
+  }
+}
+*/
+.clearfix:before,
+.clearfix:after,
+.dl-horizontal dd:before,
+.dl-horizontal dd:after,
+.container:before,
+.container:after,
+.container-fluid:before,
+.container-fluid:after,
+.row:before,
+.row:after,
+.form-horizontal .form-group:before,
+.form-horizontal .form-group:after,
+.btn-toolbar:before,
+.btn-toolbar:after,
+.btn-group-vertical>.btn-group:before,
+.btn-group-vertical>.btn-group:after,
+.nav:before,
+.nav:after,
+.navbar:before,
+.navbar:after,
+.navbar-header:before,
+.navbar-header:after,
+.navbar-collapse:before,
+.navbar-collapse:after,
+.pager:before,
+.pager:after,
+.panel-body:before,
+.panel-body:after,
+.modal-footer:before,
+.modal-footer:after {
+    display: table;
+    content: " ";
+}
+
+.clearfix:after,
+.dl-horizontal dd:after,
+.container:after,
+.container-fluid:after,
+.row:after,
+.form-horizontal .form-group:after,
+.btn-toolbar:after,
+.btn-group-vertical>.btn-group:after,
+.nav:after,
+.navbar:after,
+.navbar-header:after,
+.navbar-collapse:after,
+.pager:after,
+.panel-body:after,
+.modal-footer:after {
+    clear: both;
+}
+
+.center-block {
+    display: block;
+    margin-right: auto;
+    margin-left: auto;
+}
+
+.pull-right {
+    float: right !important;
+}
+
+.pull-left {
+    float: left !important;
+}
+
+.hide {
+    display: none !important;
+}
+
+.show {
+    display: block !important;
+}
+
+.invisible {
+    visibility: hidden;
+}
+
+.text-hide {
+    font: 0/0 a;
+    color: transparent;
+    text-shadow: none;
+    background-color: transparent;
+    border: 0;
+}
+
+.hidden {
+    display: none !important;
+    visibility: hidden !important;
+}
+
+.affix {
+    position: fixed;
+}
+
+@-ms-viewport {
+    width: device-width;
+}
+
+.visible-xs,
+.visible-sm,
+.visible-md,
+.visible-lg {
+    display: none !important;
+}
+
+.visible-xs-block,
+.visible-xs-inline,
+.visible-xs-inline-block,
+.visible-sm-block,
+.visible-sm-inline,
+.visible-sm-inline-block,
+.visible-md-block,
+.visible-md-inline,
+.visible-md-inline-block,
+.visible-lg-block,
+.visible-lg-inline,
+.visible-lg-inline-block {
+    display: none !important;
+}
+
+/*
+@media (max-width: 767px) {
+  .visible-xs {
+    display: block !important;
+  }
+  table.visible-xs {
+    display: table;
+  }
+  tr.visible-xs {
+    display: table-row !important;
+  }
+  th.visible-xs,
+  td.visible-xs {
+    display: table-cell !important;
+  }
+}
+@media (max-width: 767px) {
+  .visible-xs-block {
+    display: block !important;
+  }
+}
+@media (max-width: 767px) {
+  .visible-xs-inline {
+    display: inline !important;
+  }
+}
+@media (max-width: 767px) {
+  .visible-xs-inline-block {
+    display: inline-block !important;
+  }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+  .visible-sm {
+    display: block !important;
+  }
+  table.visible-sm {
+    display: table;
+  }
+  tr.visible-sm {
+    display: table-row !important;
+  }
+  th.visible-sm,
+  td.visible-sm {
+    display: table-cell !important;
+  }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+  .visible-sm-block {
+    display: block !important;
+  }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+  .visible-sm-inline {
+    display: inline !important;
+  }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+  .visible-sm-inline-block {
+    display: inline-block !important;
+  }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+  .visible-md {
+    display: block !important;
+  }
+  table.visible-md {
+    display: table;
+  }
+  tr.visible-md {
+    display: table-row !important;
+  }
+  th.visible-md,
+  td.visible-md {
+    display: table-cell !important;
+  }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+  .visible-md-block {
+    display: block !important;
+  }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+  .visible-md-inline {
+    display: inline !important;
+  }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+  .visible-md-inline-block {
+    display: inline-block !important;
+  }
+}
+@media (min-width: 1200px) {
+  .visible-lg {
+    display: block !important;
+  }
+  table.visible-lg {
+    display: table;
+  }
+  tr.visible-lg {
+    display: table-row !important;
+  }
+  th.visible-lg,
+  td.visible-lg {
+    display: table-cell !important;
+  }
+}
+@media (min-width: 1200px) {
+  .visible-lg-block {
+    display: block !important;
+  }
+}
+@media (min-width: 1200px) {
+  .visible-lg-inline {
+    display: inline !important;
+  }
+}
+@media (min-width: 1200px) {
+  .visible-lg-inline-block {
+    display: inline-block !important;
+  }
+}
+@media (max-width: 767px) {
+  .hidden-xs {
+    display: none !important;
+  }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+  .hidden-sm {
+    display: none !important;
+  }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+  .hidden-md {
+    display: none !important;
+  }
+}
+@media (min-width: 1200px) {
+  .hidden-lg {
+    display: none !important;
+  }
+}
+.visible-print {
+  display: none !important;
+}
+@media print {
+  .visible-print {
+    display: block !important;
+  }
+  table.visible-print {
+    display: table;
+  }
+  tr.visible-print {
+    display: table-row !important;
+  }
+  th.visible-print,
+  td.visible-print {
+    display: table-cell !important;
+  }
+}
+*/
+.visible-print-block {
+    display: none !important;
+}
+
+@media print {
+    .visible-print-block {
+        display: block !important;
+    }
+}
+
+.visible-print-inline {
+    display: none !important;
+}
+
+@media print {
+    .visible-print-inline {
+        display: inline !important;
+    }
+}
+
+.visible-print-inline-block {
+    display: none !important;
+}
+
+@media print {
+    .visible-print-inline-block {
+        display: inline-block !important;
+    }
+}
+
+@media print {
+    .hidden-print {
+        display: none !important;
+    }
+}
diff --git a/gn2/wqflask/static/new/css/box_plot.css b/gn2/wqflask/static/new/css/box_plot.css
new file mode 100644
index 00000000..4c743b33
--- /dev/null
+++ b/gn2/wqflask/static/new/css/box_plot.css
@@ -0,0 +1,20 @@
+.box {

+  font: 10px sans-serif;

+}

+

+.box line,

+.box rect,

+.box circle {

+  fill: #fff;

+  stroke: #000;

+  stroke-width: 1.5px;

+}

+

+.box .center {

+  stroke-dasharray: 3,3;

+}

+

+.box .outlier {

+  fill: none;

+  stroke: #ccc;

+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/broken_links.css b/gn2/wqflask/static/new/css/broken_links.css
new file mode 100644
index 00000000..676f32d9
--- /dev/null
+++ b/gn2/wqflask/static/new/css/broken_links.css
@@ -0,0 +1,5 @@
+
+.broken_link{
+	color:red;
+	text-decoration: underline;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/colorbox.css b/gn2/wqflask/static/new/css/colorbox.css
new file mode 100644
index 00000000..8b9fb388
--- /dev/null
+++ b/gn2/wqflask/static/new/css/colorbox.css
@@ -0,0 +1,238 @@
+/*
+    Colorbox Core Style:
+    The following CSS is consistent between example themes and should not be altered.
+*/
+#colorbox,
+#cboxOverlay,
+#cboxWrapper {
+    position: absolute;
+    top: 0;
+    left: 0;
+    z-index: 9999;
+    overflow: hidden;
+}
+
+#cboxOverlay {
+    position: fixed;
+    width: 100%;
+    height: 100%;
+}
+
+#cboxMiddleLeft,
+#cboxBottomLeft {
+    clear: left;
+}
+
+#cboxContent {
+    position: relative;
+}
+
+#cboxLoadedContent {
+    overflow: auto;
+    -webkit-overflow-scrolling: touch;
+}
+
+#cboxTitle {
+    margin: 0;
+}
+
+#cboxLoadingOverlay,
+#cboxLoadingGraphic {
+    position: absolute;
+    top: 0;
+    left: 0;
+    width: 100%;
+    height: 100%;
+}
+
+#cboxPrevious,
+#cboxNext,
+#cboxClose,
+#cboxSlideshow {
+    cursor: pointer;
+}
+
+.cboxPhoto {
+    float: left;
+    margin: auto;
+    border: 0;
+    display: block;
+    max-width: none;
+    -ms-interpolation-mode: bicubic;
+}
+
+.cboxIframe {
+    width: 100%;
+    height: 100%;
+    display: block;
+    border: 0;
+}
+
+#colorbox,
+#cboxContent,
+#cboxLoadedContent {
+    box-sizing: content-box;
+    -moz-box-sizing: content-box;
+    -webkit-box-sizing: content-box;
+}
+
+/* 
+    User Style:
+    Change the following styles to modify the appearance of Colorbox.  They are
+    ordered & tabbed in a way that represents the nesting of the generated HTML.
+*/
+#cboxOverlay {
+    background: #fff;
+}
+
+#colorbox {
+    outline: 0;
+}
+
+#cboxTopLeft {
+    width: 25px;
+    height: 25px;
+    background: url(images/border1.png) no-repeat 0 0;
+}
+
+#cboxTopCenter {
+    height: 25px;
+    background: url(images/border1.png) repeat-x 0 -50px;
+}
+
+#cboxTopRight {
+    width: 25px;
+    height: 25px;
+    background: url(images/border1.png) no-repeat -25px 0;
+}
+
+#cboxBottomLeft {
+    width: 25px;
+    height: 25px;
+    background: url(images/border1.png) no-repeat 0 -25px;
+}
+
+#cboxBottomCenter {
+    height: 25px;
+    background: url(images/border1.png) repeat-x 0 -75px;
+}
+
+#cboxBottomRight {
+    width: 25px;
+    height: 25px;
+    background: url(images/border1.png) no-repeat -25px -25px;
+}
+
+#cboxMiddleLeft {
+    width: 25px;
+    background: url(images/border2.png) repeat-y 0 0;
+}
+
+#cboxMiddleRight {
+    width: 25px;
+    background: url(images/border2.png) repeat-y -25px 0;
+}
+
+#cboxContent {
+    background: #fff;
+    overflow: hidden;
+}
+
+.cboxIframe {
+    background: #fff;
+}
+
+#cboxError {
+    padding: 50px;
+    border: 1px solid #ccc;
+}
+
+#cboxLoadedContent {
+    margin-bottom: 20px;
+}
+
+#cboxTitle {
+    position: absolute;
+    bottom: 0px;
+    left: 0;
+    text-align: center;
+    width: 100%;
+    color: #999;
+}
+
+#cboxCurrent {
+    position: absolute;
+    bottom: 0px;
+    left: 100px;
+    color: #999;
+}
+
+#cboxLoadingOverlay {
+    background: #fff url(images/loading.gif) no-repeat 5px 5px;
+}
+
+/* these elements are buttons, and may need to have additional styles reset to avoid unwanted base styles */
+#cboxPrevious,
+#cboxNext,
+#cboxSlideshow,
+#cboxClose {
+    border: 0;
+    padding: 0;
+    margin: 0;
+    overflow: visible;
+    width: auto;
+    background: none;
+}
+
+/* avoid outlines on :active (mouseclick), but preserve outlines on :focus (tabbed navigating) */
+#cboxPrevious:active,
+#cboxNext:active,
+#cboxSlideshow:active,
+#cboxClose:active {
+    outline: 0;
+}
+
+#cboxSlideshow {
+    position: absolute;
+    bottom: 0px;
+    right: 42px;
+    color: #444;
+}
+
+#cboxPrevious {
+    position: absolute;
+    bottom: 0px;
+    left: 0;
+    color: #444;
+}
+
+#cboxNext {
+    position: absolute;
+    bottom: 0px;
+    left: 63px;
+    color: #444;
+}
+
+#cboxClose {
+    position: absolute;
+    bottom: 0;
+    right: 0;
+    display: block;
+    color: #444;
+}
+
+/*
+  The following fixes a problem where IE7 and IE8 replace a PNG's alpha transparency with a black fill
+  when an alpha filter (opacity change) is set on the element or ancestor element.  This style is not applied to or needed in IE9.
+  See: http://jacklmoore.com/notes/ie-transparency-problems/
+*/
+.cboxIE #cboxTopLeft,
+.cboxIE #cboxTopCenter,
+.cboxIE #cboxTopRight,
+.cboxIE #cboxBottomLeft,
+.cboxIE #cboxBottomCenter,
+.cboxIE #cboxBottomRight,
+.cboxIE #cboxMiddleLeft,
+.cboxIE #cboxMiddleRight {
+    filter: progid:DXImageTransform.Microsoft.gradient(startColorstr=#00FFFFFF, endColorstr=#00FFFFFF);
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/corr_matrix.css b/gn2/wqflask/static/new/css/corr_matrix.css
new file mode 100644
index 00000000..cd2b0a80
--- /dev/null
+++ b/gn2/wqflask/static/new/css/corr_matrix.css
@@ -0,0 +1,30 @@
+.vertical_label {
+    -webkit-transform: rotate(-90deg);
+       -moz-transform: rotate(-90deg);
+        -ms-transform: rotate(-90deg);
+         -o-transform: rotate(-90deg);
+            transform: rotate(-90deg);
+              color: #000
+              font-size: 22px;
+              height: 50px;
+              width: 100px;
+    float: left; 
+}
+
+.chart {
+
+}
+
+.main text {
+    font: 10px sans-serif;	
+}
+
+.axis line, .axis path {
+    shape-rendering: crispEdges;
+    stroke: black;
+    fill: none;
+}
+
+circle {
+    fill: steelblue;
+}
diff --git a/gn2/wqflask/static/new/css/corr_scatter_plot.css b/gn2/wqflask/static/new/css/corr_scatter_plot.css
new file mode 100644
index 00000000..a2ebb252
--- /dev/null
+++ b/gn2/wqflask/static/new/css/corr_scatter_plot.css
@@ -0,0 +1,41 @@
+.nvd3 .nv-axis.nv-x text {
+  font-size: 16px;
+  font-weight: normal;
+  fill: black;
+}
+
+.nvd3 .nv-axis.nv-y text {
+  font-size: 16px;
+  font-weight: normal;
+  fill: black;
+}
+
+.nv-x .nv-axis g path.domain {
+    stroke: black;
+    stroke-width: 2;
+}
+
+.nv-y .nv-axis g path.domain {
+    stroke: black;
+    stroke-width: 2;
+}
+
+.nvd3 .nv-axis.nv-x path.domain {
+    stroke-opacity: 1;
+}
+
+.nvd3 .nv-axis.nv-y path.domain {
+    stroke-opacity: 1;
+}
+
+line.nv-regLine {
+    stroke: red;
+    stroke-width: 1;
+}
+
+.nv-axisMin-x,
+.nv-axisMax-x,
+.nv-axisMin-y,
+.nv-axisMax-y {
+    display: none;
+}
diff --git a/gn2/wqflask/static/new/css/corr_scatter_plot2.css b/gn2/wqflask/static/new/css/corr_scatter_plot2.css
new file mode 100644
index 00000000..a2ebb252
--- /dev/null
+++ b/gn2/wqflask/static/new/css/corr_scatter_plot2.css
@@ -0,0 +1,41 @@
+.nvd3 .nv-axis.nv-x text {
+  font-size: 16px;
+  font-weight: normal;
+  fill: black;
+}
+
+.nvd3 .nv-axis.nv-y text {
+  font-size: 16px;
+  font-weight: normal;
+  fill: black;
+}
+
+.nv-x .nv-axis g path.domain {
+    stroke: black;
+    stroke-width: 2;
+}
+
+.nv-y .nv-axis g path.domain {
+    stroke: black;
+    stroke-width: 2;
+}
+
+.nvd3 .nv-axis.nv-x path.domain {
+    stroke-opacity: 1;
+}
+
+.nvd3 .nv-axis.nv-y path.domain {
+    stroke-opacity: 1;
+}
+
+line.nv-regLine {
+    stroke: red;
+    stroke-width: 1;
+}
+
+.nv-axisMin-x,
+.nv-axisMax-x,
+.nv-axisMin-y,
+.nv-axisMax-y {
+    display: none;
+}
diff --git a/gn2/wqflask/static/new/css/d3-tip.min.css b/gn2/wqflask/static/new/css/d3-tip.min.css
new file mode 100644
index 00000000..3d253caf
--- /dev/null
+++ b/gn2/wqflask/static/new/css/d3-tip.min.css
@@ -0,0 +1 @@
+.d3-tip{line-height:1;font-weight:bold;padding:12px;background:rgba(0,0,0,0.8);color:#fff;border-radius:2px;pointer-events:none}.d3-tip:after{box-sizing:border-box;display:inline;font-size:10px;width:100%;line-height:1;color:rgba(0,0,0,0.8);position:absolute;pointer-events:none}.d3-tip.n:after{content:"\25BC";margin:-1px 0 0 0;top:100%;left:0;text-align:center}.d3-tip.e:after{content:"\25C0";margin:-4px 0 0 0;top:50%;left:-8px}.d3-tip.s:after{content:"\25B2";margin:0 0 1px 0;top:-8px;left:0;text-align:center}.d3-tip.w:after{content:"\25B6";margin:-4px 0 0 -1px;top:50%;left:100%}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/d3panels.min.css b/gn2/wqflask/static/new/css/d3panels.min.css
new file mode 100644
index 00000000..7db7b91f
--- /dev/null
+++ b/gn2/wqflask/static/new/css/d3panels.min.css
@@ -0,0 +1 @@
+svg.qtlcharts,svg.d3panels{font-family:sans-serif;font-size:11pt}svg.qtlcharts .title text,svg.d3panels .title text{dominant-baseline:middle;fill:#0074d9;text-anchor:middle}svg.qtlcharts .y.axis text,svg.d3panels .y.axis text{dominant-baseline:middle;text-anchor:end}svg.qtlcharts .y.axis text.title,svg.d3panels .y.axis text.title{text-anchor:middle;fill:slateblue}svg.qtlcharts .x.axis text,svg.d3panels .x.axis text{dominant-baseline:hanging;text-anchor:middle}svg.qtlcharts .x.axis text.title,svg.d3panels .x.axis text.title{fill:slateblue}svg.qtlcharts line.axis.grid,svg.d3panels line.axis.grid{fill:none;stroke-width:1;pointer-events:none}svg.qtlcharts line.x.axis.grid,svg.d3panels line.x.axis.grid{stroke:#c8c8c8;stroke-width:3}svg.qtlcharts line.y.axis.grid,svg.d3panels line.y.axis.grid{stroke:white}svg.qtlcharts .extent,svg.d3panels .extent{fill:#cac;opacity:.3}svg.qtlcharts circle.selected,svg.d3panels circle.selected{fill:hotpink;opacity:1}svg.qtlcharts a,svg.d3panels a{color:#08c;text-decoration:none}svg.qtlcharts a:hover,svg.d3panels a:hover{color:#333;text-decoration:underline}svg.qtlcharts text.crosstab,svg.d3panels text.crosstab{dominant-baseline:middle;text-anchor:end}svg.qtlcharts text.crosstabtitle,svg.d3panels text.crosstabtitle{dominant-baseline:middle;text-anchor:center}.caption{font-family:Sans-serif;font-size:11pt;margin-left:60px;width:600px}div.d3panels-tooltip{position:absolute;text-align:center;width:max-content;height:min-content;padding:5px;font-size:16px;font-family:sans-serif;font-weight:bold;background:darkslateblue;color:white;text-align:center;border:0;border-radius:3px;pointer-events:none;z-index:999}div.d3panels-tooltip-tri{position:absolute;text-align:center;width:32px;height:32px;padding:0;font-size:16px;font-family:sans-serif;font-weight:bold;background:#ffffff00;color:darkslateblue;text-align:center;border:0;pointer-events:none;z-index:998}div.error p{font-family:sans-serif;font-size:16pt;font-weight:bold;padding:5px}div.qtlcharts{font-family:sans-serif;font-size:12pt}div.searchbox{font-family:Sans-serif;font-size:12pt;margin-left:60px}div.searchbox.inactive input{color:#888}
diff --git a/gn2/wqflask/static/new/css/docs.css b/gn2/wqflask/static/new/css/docs.css
new file mode 100644
index 00000000..665559e6
--- /dev/null
+++ b/gn2/wqflask/static/new/css/docs.css
@@ -0,0 +1,1080 @@
+/* Add additional stylesheets below
+-------------------------------------------------- */
+/*
+  Bootstrap's documentation styles
+  Special styles for presenting Bootstrap's documentation and examples
+*/
+
+
+
+/* Body and structure
+-------------------------------------------------- */
+
+body {
+    position: relative;
+    padding-top: 0px;
+}
+
+/* Code in headings */
+h3 code {
+    font-size: 14px;
+    font-weight: normal;
+}
+
+
+
+/* Tweak navbar brand link to be super sleek
+-------------------------------------------------- */
+/*
+body > .navbar {
+  font-size: 12px;
+  font-weight: bold;
+}
+*/
+
+/* Change the docs' brand */
+
+body>.navbar .navbar-brand {
+    padding-right: 20px;
+    padding-left: 20px;
+    margin-left: 20px;
+    float: left;
+    font-weight: bold;
+    color: #ffffff;
+    text-shadow: 0 1px 0 rgba(255, 255, 255, .1), 0 0 30px rgba(255, 255, 255, .125);
+    -webkit-transition: all .2s linear;
+    -moz-transition: all .2s linear;
+    transition: all .2s linear;
+}
+
+body>.navbar .brand:hover {
+    text-decoration: none;
+    text-shadow: 0 1px 0 rgba(255, 255, 255, .1), 0 0 30px rgba(255, 255, 255, .4);
+}
+
+
+/* Sections
+-------------------------------------------------- */
+
+/* padding for in-page bookmarks and fixed navbar */
+section {
+    padding-top: 0px;
+}
+
+section>.page-header,
+section>.lead {
+    color: #5a5a5a;
+}
+
+section>ul li {
+    margin-bottom: 5px;
+}
+
+/* Separators (hr) */
+.bs-docs-separator {
+    margin: 40px 0 39px;
+}
+
+/* Faded out hr */
+hr.soften {
+    height: 1px;
+    margin: 70px 0;
+    background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, 0), rgba(0, 0, 0, .1), rgba(0, 0, 0, 0));
+    background-image: -moz-linear-gradient(left, rgba(0, 0, 0, 0), rgba(0, 0, 0, .1), rgba(0, 0, 0, 0));
+    background-image: -ms-linear-gradient(left, rgba(0, 0, 0, 0), rgba(0, 0, 0, .1), rgba(0, 0, 0, 0));
+    background-image: -o-linear-gradient(left, rgba(0, 0, 0, 0), rgba(0, 0, 0, .1), rgba(0, 0, 0, 0));
+    border: 0;
+}
+
+
+
+/* Jumbotrons
+-------------------------------------------------- */
+
+/* Base class
+------------------------- */
+.jumbotron {
+    position: relative;
+    padding: 0px 0;
+    color: black;
+    text-align: left;
+    text-shadow: 0 1px 3px rgba(0, 0, 0, .4), 0 0 30px rgba(0, 0, 0, .075);
+    background: #d5d5d5;
+    /* Old browsers */
+
+}
+
+.jumbotron h1 {
+    font-size: 60px;
+    font-weight: bold;
+    letter-spacing: -1px;
+    line-height: 1;
+}
+
+.jumbotron p {
+    font-size: 20px;
+    font-weight: 300;
+    line-height: 20px;
+    margin-bottom: 10px;
+}
+
+/* Link styles (used on .masthead-links as well) */
+.jumbotron a {
+    color: #336699;
+    color: rgba(255, 255, 255, .5);
+    -webkit-transition: all .2s ease-in-out;
+    -moz-transition: all .2s ease-in-out;
+    transition: all .2s ease-in-out;
+}
+
+.jumbotron a:hover {
+    color: #336699;
+    text-shadow: 0 0 10px rgba(255, 255, 255, .25);
+}
+
+/* Download button */
+.masthead .btn {
+    padding: 14px 24px;
+    font-size: 24px;
+    font-weight: 200;
+    color: #fff;
+    /* redeclare to override the `.jumbotron a` */
+    border: 0;
+    -webkit-border-radius: 6px;
+    -moz-border-radius: 6px;
+    border-radius: 6px;
+    -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 5px rgba(0, 0, 0, .25);
+    -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 5px rgba(0, 0, 0, .25);
+    box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 5px rgba(0, 0, 0, .25);
+    -webkit-transition: none;
+    -moz-transition: none;
+    transition: none;
+}
+
+.masthead .btn:hover {
+    -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 5px rgba(0, 0, 0, .25);
+    -moz-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 5px rgba(0, 0, 0, .25);
+    box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 5px rgba(0, 0, 0, .25);
+}
+
+.masthead .btn:active {
+    -webkit-box-shadow: inset 0 2px 4px rgba(0, 0, 0, .1), 0 1px 0 rgba(255, 255, 255, .1);
+    -moz-box-shadow: inset 0 2px 4px rgba(0, 0, 0, .1), 0 1px 0 rgba(255, 255, 255, .1);
+    box-shadow: inset 0 2px 4px rgba(0, 0, 0, .1), 0 1px 0 rgba(255, 255, 255, .1);
+}
+
+
+/* Pattern overlay
+------------------------- */
+.jumbotron .container {
+    position: relative;
+    z-index: 2;
+}
+
+.jumbotron:after {
+    content: '';
+    display: block;
+    position: absolute;
+    top: 0;
+    right: 0;
+    bottom: 0;
+    left: 0;
+    /*background: url(../img/bs-docs-masthead-pattern.png) repeat center center;*/
+    opacity: .4;
+}
+
+/* Masthead (docs home)
+------------------------- */
+.masthead {
+    padding: 70px 0 80px;
+    margin-bottom: 0;
+    color: #fff;
+}
+
+.masthead h1 {
+    font-size: 120px;
+    line-height: 1;
+    letter-spacing: -2px;
+}
+
+.masthead p {
+    font-size: 40px;
+    font-weight: 200;
+    line-height: 1.25;
+}
+
+/* Textual links in masthead */
+.masthead-links {
+    margin: 0;
+    list-style: none;
+}
+
+.masthead-links li {
+    display: inline;
+    padding: 0 10px;
+    color: rgba(255, 255, 255, .25);
+}
+
+/* Social proof buttons from GitHub & Twitter */
+.bs-docs-social {
+    padding: 15px 0;
+    text-align: center;
+    background-color: #f5f5f5;
+    border-top: 1px solid #fff;
+    border-bottom: 1px solid #ddd;
+}
+
+/* Quick links on Home */
+.bs-docs-social-buttons {
+    margin-left: 0;
+    margin-bottom: 0;
+    padding-left: 0;
+    list-style: none;
+}
+
+.bs-docs-social-buttons li {
+    display: inline-block;
+    padding: 5px 8px;
+    line-height: 1;
+    *display: inline;
+    *zoom: 1;
+}
+
+/* Subhead (other pages)
+------------------------- */
+.subhead {
+    text-align: left;
+    border-bottom: 1px solid #ddd;
+}
+
+.subhead h1 {
+    font-size: 30px;
+}
+
+.subhead p {
+    margin-bottom: 10px;
+}
+
+.subhead .navbar {
+    display: none;
+}
+
+
+
+/* Marketing section of Overview
+-------------------------------------------------- */
+
+.marketing {
+    text-align: center;
+    color: #5a5a5a;
+}
+
+.marketing h1 {
+    margin: 60px 0 10px;
+    font-size: 60px;
+    font-weight: 200;
+    line-height: 1;
+    letter-spacing: -1px;
+}
+
+.marketing h2 {
+    font-weight: 200;
+    margin-bottom: 5px;
+}
+
+.marketing p {
+    font-size: 16px;
+    line-height: 1.5;
+}
+
+.marketing .marketing-byline {
+    margin-bottom: 40px;
+    font-size: 20px;
+    font-weight: 300;
+    line-height: 25px;
+    color: #999;
+}
+
+.marketing img {
+    display: block;
+    margin: 0 auto 30px;
+}
+
+
+
+/* Footer
+-------------------------------------------------- */
+
+.footer {
+    padding: 70px 0;
+    margin-top: 70px;
+    border-top: 1px solid #e5e5e5;
+    background-color: #f5f5f5;
+}
+
+.footer p {
+    margin-bottom: 0;
+    color: #777;
+}
+
+.footer-links {
+    margin: 10px 0;
+}
+
+.footer-links li {
+    display: inline;
+    margin-right: 10px;
+}
+
+
+
+/* Special grid styles
+-------------------------------------------------- */
+
+.show-grid {
+    margin-top: 10px;
+    margin-bottom: 20px;
+}
+
+.show-grid [class*="span"] {
+    background-color: #eee;
+    text-align: center;
+    -webkit-border-radius: 3px;
+    -moz-border-radius: 3px;
+    border-radius: 3px;
+    min-height: 40px;
+    line-height: 40px;
+}
+
+.show-grid:hover [class*="span"] {
+    background: #ddd;
+}
+
+.show-grid .show-grid {
+    margin-top: 0;
+    margin-bottom: 0;
+}
+
+.show-grid .show-grid [class*="span"] {
+    background-color: #ccc;
+}
+
+
+
+/* Mini layout previews
+-------------------------------------------------- */
+.mini-layout {
+    border: 1px solid #ddd;
+    -webkit-border-radius: 6px;
+    -moz-border-radius: 6px;
+    border-radius: 6px;
+    -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+    -moz-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+    box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+}
+
+.mini-layout,
+.mini-layout .mini-layout-body,
+.mini-layout.fluid .mini-layout-sidebar {
+    height: 300px;
+}
+
+.mini-layout {
+    margin-bottom: 20px;
+    padding: 9px;
+}
+
+.mini-layout div {
+    -webkit-border-radius: 3px;
+    -moz-border-radius: 3px;
+    border-radius: 3px;
+}
+
+.mini-layout .mini-layout-body {
+    background-color: #dceaf4;
+    margin: 0 auto;
+    width: 70%;
+}
+
+.mini-layout.fluid .mini-layout-sidebar,
+.mini-layout.fluid .mini-layout-header,
+.mini-layout.fluid .mini-layout-body {
+    float: left;
+}
+
+.mini-layout.fluid .mini-layout-sidebar {
+    background-color: #bbd8e9;
+    width: 20%;
+}
+
+.mini-layout.fluid .mini-layout-body {
+    width: 77.5%;
+    margin-left: 2.5%;
+}
+
+
+
+/* Download page
+-------------------------------------------------- */
+
+.download .page-header {
+    margin-top: 36px;
+}
+
+.page-header .toggle-all {
+    margin-top: 5px;
+}
+
+/* Space out h3s when following a section */
+.download h3 {
+    margin-bottom: 5px;
+}
+
+.download-builder input+h3,
+.download-builder .checkbox+h3 {
+    margin-top: 9px;
+}
+
+/* Fields for variables */
+.download-builder input[type=text] {
+    margin-bottom: 9px;
+    font-family: Menlo, Monaco, "Courier New", monospace;
+    font-size: 12px;
+    color: #d14;
+}
+
+.download-builder input[type=text]:focus {
+    background-color: #fff;
+}
+
+/* Custom, larger checkbox labels */
+.download .checkbox {
+    padding: 6px 10px 6px 25px;
+    font-size: 13px;
+    line-height: 18px;
+    color: #555;
+    background-color: #f9f9f9;
+    -webkit-border-radius: 3px;
+    -moz-border-radius: 3px;
+    border-radius: 3px;
+    cursor: pointer;
+}
+
+.download .checkbox:hover {
+    color: #333;
+    background-color: #f5f5f5;
+}
+
+.download .checkbox small {
+    font-size: 12px;
+    color: #777;
+}
+
+/* Variables section */
+#variables label {
+    margin-bottom: 0;
+}
+
+/* Giant download button */
+.download-btn {
+    margin: 36px 0 108px;
+}
+
+#download p,
+#download h4 {
+    max-width: 50%;
+    margin: 0 auto;
+    color: #999;
+    text-align: center;
+}
+
+#download h4 {
+    margin-bottom: 0;
+}
+
+#download p {
+    margin-bottom: 18px;
+}
+
+.download-btn .btn {
+    display: block;
+    width: auto;
+    padding: 19px 24px;
+    margin-bottom: 27px;
+    font-size: 30px;
+    line-height: 1;
+    text-align: center;
+    -webkit-border-radius: 6px;
+    -moz-border-radius: 6px;
+    border-radius: 6px;
+}
+
+
+
+/* Misc
+-------------------------------------------------- */
+
+/* Make tables spaced out a bit more */
+h2+table,
+h3+table,
+h4+table,
+h2+.row {
+    margin-top: 5px;
+}
+
+/* Example sites showcase */
+.example-sites {
+    xmargin-left: 20px;
+}
+
+.example-sites img {
+    max-width: 100%;
+    margin: 0 auto;
+}
+
+.scrollspy-example {
+    height: 200px;
+    overflow: auto;
+    position: relative;
+}
+
+
+/* Fake the :focus state to demo it */
+.focused {
+    border-color: rgba(82, 168, 236, .8);
+    -webkit-box-shadow: inset 0 1px 3px rgba(0, 0, 0, .1), 0 0 8px rgba(82, 168, 236, .6);
+    -moz-box-shadow: inset 0 1px 3px rgba(0, 0, 0, .1), 0 0 8px rgba(82, 168, 236, .6);
+    box-shadow: inset 0 1px 3px rgba(0, 0, 0, .1), 0 0 8px rgba(82, 168, 236, .6);
+    outline: 0;
+}
+
+/* For input sizes, make them display block */
+.docs-input-sizes select,
+.docs-input-sizes input[type=text] {
+    display: block;
+    margin-bottom: 9px;
+}
+
+/* Icons
+------------------------- */
+.the-icons {
+    margin-left: 0;
+    list-style: none;
+}
+
+.the-icons li {
+    float: left;
+    width: 25%;
+    line-height: 25px;
+}
+
+.the-icons i:hover {
+    background-color: rgba(255, 0, 0, .25);
+}
+
+/* Example page
+------------------------- */
+.bootstrap-examples p {
+    font-size: 13px;
+    line-height: 18px;
+}
+
+.bootstrap-examples .thumbnail {
+    margin-bottom: 9px;
+    background-color: #fff;
+}
+
+
+
+/* Bootstrap code examples
+-------------------------------------------------- */
+
+/* Base class */
+.bs-docs-example {
+    position: relative;
+    margin: 15px 0;
+    padding: 39px 19px 14px;
+    *padding-top: 19px;
+    background-color: #fff;
+    border: 1px solid #ddd;
+    -webkit-border-radius: 4px;
+    -moz-border-radius: 4px;
+    border-radius: 4px;
+}
+
+
+/* Remove spacing between an example and it's code */
+.bs-docs-example+.prettyprint {
+    margin-top: -20px;
+    padding-top: 15px;
+}
+
+/* Tweak examples
+------------------------- */
+.bs-docs-example>p:last-child {
+    margin-bottom: 0;
+}
+
+.bs-docs-example .table,
+.bs-docs-example .progress,
+.bs-docs-example .well,
+.bs-docs-example .alert,
+.bs-docs-example .hero-unit,
+.bs-docs-example .pagination,
+.bs-docs-example .navbar,
+.bs-docs-example>.nav,
+.bs-docs-example blockquote {
+    margin-bottom: 5px;
+}
+
+.bs-docs-example .pagination {
+    margin-top: 0;
+}
+
+.bs-navbar-top-example,
+.bs-navbar-bottom-example {
+    z-index: 1;
+    padding: 0;
+    height: 90px;
+    overflow: hidden;
+    /* cut the drop shadows off */
+}
+
+.bs-navbar-top-example .navbar-fixed-top,
+.bs-navbar-bottom-example .navbar-fixed-bottom {
+    margin-left: 0;
+    margin-right: 0;
+}
+
+.bs-navbar-top-example {
+    -webkit-border-radius: 0 0 4px 4px;
+    -moz-border-radius: 0 0 4px 4px;
+    border-radius: 0 0 4px 4px;
+}
+
+.bs-navbar-top-example:after {
+    top: auto;
+    bottom: -1px;
+    -webkit-border-radius: 0 4px 0 4px;
+    -moz-border-radius: 0 4px 0 4px;
+    border-radius: 0 4px 0 4px;
+}
+
+.bs-navbar-bottom-example {
+    -webkit-border-radius: 4px 4px 0 0;
+    -moz-border-radius: 4px 4px 0 0;
+    border-radius: 4px 4px 0 0;
+}
+
+.bs-navbar-bottom-example .navbar {
+    margin-bottom: 0;
+}
+
+form.bs-docs-example {
+    padding-bottom: 19px;
+}
+
+/* Images */
+.bs-docs-example-images img {
+    margin: 10px;
+    display: inline-block;
+}
+
+/* Tooltips */
+.bs-docs-tooltip-examples {
+    text-align: center;
+    margin: 0 0 10px;
+    list-style: none;
+}
+
+.bs-docs-tooltip-examples li {
+    display: inline;
+    padding: 0 10px;
+}
+
+/* Popovers */
+.bs-docs-example-popover {
+    padding-bottom: 24px;
+    background-color: #f9f9f9;
+}
+
+.bs-docs-example-popover .popover {
+    position: relative;
+    display: block;
+    float: left;
+    width: 260px;
+    margin: 20px;
+}
+
+
+
+/* Responsive docs
+-------------------------------------------------- */
+
+/* Utility classes table
+------------------------- */
+.responsive-utilities th small {
+    display: block;
+    font-weight: normal;
+    color: #999;
+}
+
+.responsive-utilities tbody th {
+    font-weight: normal;
+}
+
+.responsive-utilities td {
+    text-align: center;
+}
+
+.responsive-utilities td.is-visible {
+    color: #468847;
+    background-color: #dff0d8 !important;
+}
+
+.responsive-utilities td.is-hidden {
+    color: #ccc;
+    background-color: #f9f9f9 !important;
+}
+
+/* Responsive tests
+------------------------- */
+.responsive-utilities-test {
+    margin-top: 5px;
+    margin-left: 0;
+    list-style: none;
+    overflow: hidden;
+    /* clear floats */
+}
+
+.responsive-utilities-test li {
+    position: relative;
+    float: left;
+    width: 25%;
+    height: 43px;
+    font-size: 14px;
+    font-weight: bold;
+    line-height: 43px;
+    color: #999;
+    text-align: center;
+    border: 1px solid #ddd;
+    -webkit-border-radius: 4px;
+    -moz-border-radius: 4px;
+    border-radius: 4px;
+}
+
+.responsive-utilities-test li+li {
+    margin-left: 10px;
+}
+
+.responsive-utilities-test span {
+    position: absolute;
+    top: -1px;
+    left: -1px;
+    right: -1px;
+    bottom: -1px;
+    -webkit-border-radius: 4px;
+    -moz-border-radius: 4px;
+    border-radius: 4px;
+}
+
+.responsive-utilities-test span {
+    color: #468847;
+    background-color: #dff0d8;
+    border: 1px solid #d6e9c6;
+}
+
+
+
+/* Sidenav for Docs
+-------------------------------------------------- */
+
+.bs-docs-sidenav {
+    width: 228px;
+    margin: 30px 0 0;
+    padding: 0;
+    background-color: #fff;
+    -webkit-border-radius: 6px;
+    -moz-border-radius: 6px;
+    border-radius: 6px;
+    -webkit-box-shadow: 0 1px 4px rgba(0, 0, 0, .065);
+    -moz-box-shadow: 0 1px 4px rgba(0, 0, 0, .065);
+    box-shadow: 0 1px 4px rgba(0, 0, 0, .065);
+}
+
+.bs-docs-sidenav>li>a {
+    display: block;
+    *width: 190px;
+    margin: 0 0 -1px;
+    padding: 8px 14px;
+    border: 1px solid #e5e5e5;
+}
+
+.bs-docs-sidenav>li:first-child>a {
+    -webkit-border-radius: 6px 6px 0 0;
+    -moz-border-radius: 6px 6px 0 0;
+    border-radius: 6px 6px 0 0;
+}
+
+.bs-docs-sidenav>li:last-child>a {
+    -webkit-border-radius: 0 0 6px 6px;
+    -moz-border-radius: 0 0 6px 6px;
+    border-radius: 0 0 6px 6px;
+}
+
+.bs-docs-sidenav>.active>a {
+    position: relative;
+    z-index: 2;
+    padding: 9px 15px;
+    border: 0;
+    text-shadow: 0 1px 0 rgba(0, 0, 0, .15);
+    -webkit-box-shadow: inset 1px 0 0 rgba(0, 0, 0, .1), inset -1px 0 0 rgba(0, 0, 0, .1);
+    -moz-box-shadow: inset 1px 0 0 rgba(0, 0, 0, .1), inset -1px 0 0 rgba(0, 0, 0, .1);
+    box-shadow: inset 1px 0 0 rgba(0, 0, 0, .1), inset -1px 0 0 rgba(0, 0, 0, .1);
+}
+
+/* Chevrons */
+.bs-docs-sidenav .icon-chevron-right {
+    float: right;
+    margin-top: 2px;
+    margin-right: -6px;
+    opacity: .25;
+}
+
+.bs-docs-sidenav>li>a:hover {
+    background-color: #f5f5f5;
+}
+
+.bs-docs-sidenav a:hover .icon-chevron-right {
+    opacity: .5;
+}
+
+.bs-docs-sidenav .active .icon-chevron-right,
+.bs-docs-sidenav .active a:hover .icon-chevron-right {
+    background-image: url(../img/glyphicons-halflings-white.png);
+    opacity: 1;
+}
+
+.bs-docs-sidenav.affix {
+    top: 40px;
+}
+
+.bs-docs-sidenav.affix-bottom {
+    position: absolute;
+    top: auto;
+    bottom: 270px;
+}
+
+
+
+
+/* Responsive
+-------------------------------------------------- */
+
+/* Desktop large
+------------------------- */
+@media (min-width: 1200px) {
+    .bs-docs-container {
+        max-width: 970px;
+    }
+
+    .bs-docs-sidenav {
+        width: 258px;
+    }
+}
+
+/* Desktop
+------------------------- */
+@media (max-width: 980px) {
+
+    /* Unfloat brand */
+    body>.navbar-fixed-top .brand {
+        float: left;
+        margin-left: 0;
+        padding-left: 10px;
+        padding-right: 10px;
+    }
+
+    /* Inline-block quick links for more spacing */
+    .quick-links li {
+        display: inline-block;
+        margin: 5px;
+    }
+
+    /* When affixed, space properly */
+    .bs-docs-sidenav {
+        top: 0;
+        margin-top: 30px;
+        margin-right: 0;
+    }
+}
+
+/* Tablet to desktop
+------------------------- */
+@media (min-width: 768px) and (max-width: 980px) {
+
+    /* Remove any padding from the body */
+    body {
+        padding-top: 0;
+    }
+
+    /* Widen masthead and social buttons to fill body padding */
+    .jumbotron {
+        margin-top: -20px;
+        /* Offset bottom margin on .navbar */
+    }
+
+    /* Adjust sidenav width */
+    .bs-docs-sidenav {
+        width: 166px;
+        margin-top: 20px;
+    }
+
+    .bs-docs-sidenav.affix {
+        top: 0;
+    }
+}
+
+/* Tablet
+------------------------- */
+@media (max-width: 767px) {
+
+    /* Remove any padding from the body */
+    body {
+        padding-top: 0;
+    }
+
+    /* Widen masthead and social buttons to fill body padding */
+    .jumbotron {
+        padding: 40px 20px;
+        margin-top: -20px;
+        /* Offset bottom margin on .navbar */
+        margin-right: -20px;
+        margin-left: -20px;
+    }
+
+    .masthead h1 {
+        font-size: 90px;
+    }
+
+    .masthead p,
+    .masthead .btn {
+        font-size: 24px;
+    }
+
+    .marketing .span4 {
+        margin-bottom: 40px;
+    }
+
+    .bs-docs-social {
+        margin: 0 -20px;
+    }
+
+    /* Space out the show-grid examples */
+    .show-grid [class*="span"] {
+        margin-bottom: 5px;
+    }
+
+    /* Sidenav */
+    .bs-docs-sidenav {
+        width: auto;
+        margin-bottom: 20px;
+    }
+
+    .bs-docs-sidenav.affix {
+        position: static;
+        width: auto;
+        top: 0;
+    }
+
+    /* Unfloat the back to top link in footer */
+    .footer {
+        margin-left: -20px;
+        margin-right: -20px;
+        padding-left: 20px;
+        padding-right: 20px;
+    }
+
+    .footer p {
+        margin-bottom: 9px;
+    }
+}
+
+/* Landscape phones
+------------------------- */
+@media (max-width: 480px) {
+
+    /* Remove padding above jumbotron */
+    body {
+        padding-top: 0;
+    }
+
+    /* Change up some type stuff */
+    h2 small {
+        display: block;
+    }
+
+    /* Downsize the jumbotrons */
+    .jumbotron h1 {
+        font-size: 40px;
+    }
+
+    .jumbotron p,
+    .jumbotron .btn {
+        font-size: 20px;
+    }
+
+    .jumbotron .btn {
+        display: block;
+        margin: 0 auto;
+    }
+
+    /* center align subhead text like the masthead */
+    .subhead h1,
+    .subhead p {
+        text-align: left;
+    }
+
+    /* Marketing on home */
+    .marketing h1 {
+        font-size: 40px;
+    }
+
+    /* center example sites */
+    .example-sites {
+        margin-left: 0;
+    }
+
+    .example-sites>li {
+        float: none;
+        display: block;
+        max-width: 280px;
+        margin: 0 auto 18px;
+        text-align: center;
+    }
+
+    .example-sites .thumbnail>img {
+        max-width: 270px;
+    }
+
+    /* Do our best to make tables work in narrow viewports */
+    table code {
+        white-space: normal;
+        word-wrap: break-word;
+        word-break: break-all;
+    }
+
+    /* Modal example */
+    .modal-example .modal {
+        position: relative;
+        top: auto;
+        right: auto;
+        bottom: auto;
+        left: auto;
+    }
+
+    /* Unfloat the back to top in footer to prevent odd text wrapping */
+    .footer .pull-right {
+        float: none;
+    }
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/index_page.css b/gn2/wqflask/static/new/css/index_page.css
new file mode 100644
index 00000000..34b3cebf
--- /dev/null
+++ b/gn2/wqflask/static/new/css/index_page.css
@@ -0,0 +1,4 @@
+.info-button {

+    border: #A9A9A9;

+    background-color: #D3D3D3;

+}

diff --git a/gn2/wqflask/static/new/css/jupyter_notebooks.css b/gn2/wqflask/static/new/css/jupyter_notebooks.css
new file mode 100644
index 00000000..db972a17
--- /dev/null
+++ b/gn2/wqflask/static/new/css/jupyter_notebooks.css
@@ -0,0 +1,16 @@
+.jupyter-links {
+    padding: 1.5em;
+}
+
+.jupyter-links:nth-of-type(2n) {
+    background: #EEEEEE;
+}
+
+.jupyter-links .main-link {
+    font-size: larger;
+    display: block;
+}
+
+.jupyter-links .src-link {
+    font-size: smaller;
+}
diff --git a/gn2/wqflask/static/new/css/main.css b/gn2/wqflask/static/new/css/main.css
new file mode 100644
index 00000000..d5fb8a61
--- /dev/null
+++ b/gn2/wqflask/static/new/css/main.css
@@ -0,0 +1,40 @@
+@media (max-width: 10px) {
+    .navbar-header {
+        float: none;
+    }
+    .navbar-toggle {
+        display: block;
+    }
+    .navbar-collapse {
+        border-top: 1px solid transparent;
+        box-shadow: inset 0 1px 0 rgba(255,255,255,0.1);
+    }
+    .navbar-collapse.collapse {
+        display: none!important;
+    }
+    .navbar-nav {
+        float: none!important;
+        margin: 7.5px -15px;
+    }
+    .navbar-nav>li {
+        float: none;
+    }
+    .navbar-nav>li>a {
+        padding-top: 10px;
+        padding-bottom: 10px;
+    }
+    .navbar-text {
+        float: none;
+        margin: 15px 0;
+    }
+    .navbar-collapse.collapse.in {
+        display: block!important;
+    }
+    .collapsing {
+        overflow: hidden!important;
+    }
+}
+
+.checkbox {
+    min-height: 20px;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/markdown.css b/gn2/wqflask/static/new/css/markdown.css
new file mode 100644
index 00000000..859fe7fc
--- /dev/null
+++ b/gn2/wqflask/static/new/css/markdown.css
@@ -0,0 +1,108 @@
+#markdown {
+    padding: 20px;
+}
+
+#markdown h2,
+#markdown h3,
+#markdown h4,
+#markdown h5 {
+    font-weight: bold;
+}
+
+#markdown img {
+    display: block;
+    margin-right: auto;
+    margin-left: auto;
+}
+
+.github-btn-container {
+    margin: 20px 10px;
+    display: flex;
+    width: 90vw;
+    justify-content: flex-end;
+}
+
+.github-btn {
+    display: flex;
+    justify-content: center;
+    border: 3px solid #357ebd;
+    background: lightgrey;
+    padding: 3px 4px;
+    width: 200px;
+    border-radius: 16px;
+}
+
+.github-btn a {
+    align-self: center;
+    font-weight: bold;
+    color: #357ebd;
+}
+
+.github-btn a img {
+    height: 40px;
+    width: 40px;
+    padding-left:5px;
+}
+
+
+.container {
+    width: 80vw;
+    margin: auto;
+    max-width: 80vw;
+
+}
+
+.container p {
+    font-size: 17px;
+    word-spacing: 0.2em;
+}
+
+.graph-legend h1 {
+    text-align: center;
+}
+
+.graph-legend,
+#guix-graph,
+#guix-svg-graph{
+    width: 90%;
+    margin: 10px auto;
+}
+
+#guix-graph {
+    border: solid 2px black;
+}
+
+#guix-svg-graph img {
+    width: 100%;
+}
+
+#markdown table {
+    width: 100%;
+}
+
+#markdown td {
+    padding: 1em;
+    text-align: left;
+}
+
+#markdown th {
+    text-align: center;
+}
+
+#markdown table,
+#markdown td,
+#markdown th {
+    border: solid 2px black;
+}
+
+#markdown td,
+#markdown th {
+    padding-top: 8px;
+    padding-bottom: 8px;
+}
+
+@media(max-width:650px) {
+    .container {
+        width: 100vw;
+    }
+}
diff --git a/gn2/wqflask/static/new/css/marker_regression.css b/gn2/wqflask/static/new/css/marker_regression.css
new file mode 100644
index 00000000..9f56b63d
--- /dev/null
+++ b/gn2/wqflask/static/new/css/marker_regression.css
@@ -0,0 +1,76 @@
+.chr_manhattan_plot .y_axis path,
+.chr_manhattan_plot .y_axis line {
+    fill: none;
+    stroke: black;
+    shape-rendering: crispEdges;
+}
+.chr_manhattan_plot .y_axis text {
+    font-family: sans-serif;
+    font-size: 14px;
+}
+
+.chr_manhattan_plot .x_axis path,
+.chr_manhattan_plot .x_axis line {
+    fill: none;
+    stroke: black;
+    shape-rendering: crispEdges;
+}
+
+.chr_manhattan_plot .x_axis text {
+    text-anchor: end;
+    font-family: sans-serif;
+    font-size: 10px;
+}
+
+rect.pane {
+  cursor: move;
+  fill: none;
+  pointer-events: all;
+}
+
+/*rect {
+    stroke: WhiteSmoke;
+    fill: lightgrey;
+}*/
+/*rect {
+    stroke: WhiteSmoke;
+    fill: Azure;
+}*/
+
+tr .outlier {
+    background-color: #ffff99;
+}
+
+table.dataTable thead th{
+  border-right: 1px solid white;
+  color: white;
+  background-color: #369;
+}
+
+table.dataTable thead .sorting_asc {
+  background-image: url("/js/DataTables/images/sort_asc_disabled.png");
+}
+table.dataTable thead .sorting_desc {
+  background-image: url("/js/DataTables/images/sort_desc_disabled.png");
+}
+
+table.dataTable thead th {
+  padding: 4px 18px 4px 10px;
+}
+
+table.dataTable tbody td {
+  padding: 4px 20px 2px 10px;
+}
+
+table.dataTable tbody tr.selected {
+  background-color: #ffee99;
+}
+
+table.dataTable.cell-border tbody th, table.dataTable.cell-border tbody td {
+  border-top: 1px solid #ccc;
+  border-right: 1px solid #ccc;
+}
+table.dataTable.cell-border tbody tr th:first-child,
+table.dataTable.cell-border tbody tr td:first-child {
+  border-left: 1px solid #ccc;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/mytooltip.css b/gn2/wqflask/static/new/css/mytooltip.css
new file mode 100644
index 00000000..bc44c488
--- /dev/null
+++ b/gn2/wqflask/static/new/css/mytooltip.css
@@ -0,0 +1,16 @@
+.mytooltiptext {
+    visibility: hidden;
+    width: inherit;
+    background-color: #E5E5AF;
+    color: #595959;
+    text-align: left;
+    padding: 5px 0;
+    border-radius: 6px;
+
+    position: absolute;
+    z-index: 1;
+}
+
+.mytooltip:hover .mytooltiptext {
+    visibility: visible;
+}
diff --git a/gn2/wqflask/static/new/css/network_graph.css b/gn2/wqflask/static/new/css/network_graph.css
new file mode 100644
index 00000000..1a0bafeb
--- /dev/null
+++ b/gn2/wqflask/static/new/css/network_graph.css
@@ -0,0 +1,37 @@
+#content h2, h3, h4, h5, h6 {
+    color: #545454;
+    margin-bottom: 1em;
+    border-bottom: dashed 1px #dfdfdf;
+    padding-bottom: 0.3em;
+}
+
+#content table td {
+    padding: 0.5em;
+    /* border-right: solid 1px #fff; */
+}
+
+#secondaryContent {
+    position: relative;
+    float: left;
+    width: 18.5em;
+    background: #fff url('/static/new/images/a1.gif') top right repeat-y;
+}
+
+
+input[type="button" i], input[type="submit" i], input[type="reset" i], input[type="file" i]::-webkit-file-upload-button, button {
+    align-items: flex-start;
+    text-align: center;
+    cursor: default;
+    color: buttontext;
+    border-image-source: initial;
+    border-image-slice: initial;
+    border-image-width: initial;
+    border-image-outset: initial;
+    border-image-repeat: initial;
+    background-color: buttonface;
+    box-sizing: border-box;
+    padding: 2px 6px 3px;
+    border-width: 2px;
+    border-style: outset;
+    border-color: buttonface;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/non-responsive.css b/gn2/wqflask/static/new/css/non-responsive.css
new file mode 100644
index 00000000..a4bcddd2
--- /dev/null
+++ b/gn2/wqflask/static/new/css/non-responsive.css
@@ -0,0 +1,114 @@
+/* Template-specific stuff
+ *
+ * Customizations just for the template; these are not necessary for anything
+ * with disabling the responsiveness.
+ */
+
+/* Account for fixed navbar */
+body {
+    //min-width: 1200px;
+    padding-top: 70px;
+    padding-bottom: 30px;
+}
+
+/* Finesse the page header spacing */
+.page-header {
+    margin-bottom: 10px;
+}
+
+.page-header .lead {
+    margin-bottom: 10px;
+}
+
+
+/* Non-responsive overrides
+ *
+ * Utilitze the following CSS to disable the responsive-ness of the container,
+ * grid system, and navbar.
+ */
+
+/* Reset the container */
+.container {
+    width: 100%;
+    max-width: none !important;
+}
+
+
+.container .navbar-header,
+.container .navbar-collapse {
+    margin-right: 0;
+    margin-left: 0;
+}
+
+/* Always float the navbar header */
+.navbar-header {
+    float: left;
+}
+
+/* Undo the collapsing navbar */
+.navbar-collapse {
+    display: block !important;
+    height: auto !important;
+    padding-bottom: 0;
+    overflow: visible !important;
+}
+
+.navbar-toggle {
+    display: none;
+}
+
+.navbar-collapse {
+    border-top: 0;
+}
+
+/* Always apply the floated nav */
+.navbar-nav {
+    float: left;
+    margin: 0;
+}
+
+.navbar-nav>li {
+    float: left;
+}
+
+.navbar-nav>li>a {
+    padding: 5px;
+}
+
+/* Redeclare since we override the float above */
+.navbar-nav.navbar-right {
+    float: right;
+}
+
+/* Undo custom dropdowns */
+.navbar .navbar-nav .open .dropdown-menu {
+    position: absolute;
+    float: left;
+    background-color: #fff;
+    border: 1px solid #ccc;
+    border: 1px solid rgba(0, 0, 0, .15);
+    border-width: 0 1px 1px;
+    border-radius: 0 0 4px 4px;
+    -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, .175);
+    box-shadow: 0 6px 12px rgba(0, 0, 0, .175);
+}
+
+.navbar-default .navbar-nav .open .dropdown-menu>li>a {
+    color: #333;
+}
+
+.navbar .navbar-nav .open .dropdown-menu>li>a:hover,
+.navbar .navbar-nav .open .dropdown-menu>li>a:focus,
+.navbar .navbar-nav .open .dropdown-menu>.active>a,
+.navbar .navbar-nav .open .dropdown-menu>.active>a:hover,
+.navbar .navbar-nav .open .dropdown-menu>.active>a:focus {
+    color: #fff !important;
+    background-color: #3071a9 !important;
+}
+
+.navbar .navbar-nav .open .dropdown-menu>.disabled>a,
+.navbar .navbar-nav .open .dropdown-menu>.disabled>a:hover,
+.navbar .navbar-nav .open .dropdown-menu>.disabled>a:focus {
+    color: #999 !important;
+    background-color: transparent !important;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/pair_scan.css b/gn2/wqflask/static/new/css/pair_scan.css
new file mode 100644
index 00000000..90cec529
--- /dev/null
+++ b/gn2/wqflask/static/new/css/pair_scan.css
@@ -0,0 +1,6 @@
+/* Unset CSS for tooltip since it will inherit from the bootstrap tooltip class CSS otherwise */

+.tooltip{all:unset;}

+

+.pairscan-container {

+    width: 1000px;

+}

diff --git a/gn2/wqflask/static/new/css/panelutil.css b/gn2/wqflask/static/new/css/panelutil.css
new file mode 100644
index 00000000..ccd7eb01
--- /dev/null
+++ b/gn2/wqflask/static/new/css/panelutil.css
@@ -0,0 +1,91 @@
+

+/* figures will always be within a div with class="qtlcharts" */

+div.qtlcharts {

+  font-family: sans-serif;

+  font-size: 11pt;

+}

+

+div.qtlcharts .title text {

+  dominant-baseline: middle;

+  fill: blue;

+  text-anchor: middle;

+}

+

+div.qtlcharts .y.axis text {

+  dominant-baseline: middle;

+  text-anchor: end;

+}

+

+div.qtlcharts .y.axis text.title {

+  text-anchor: middle;

+  fill: slateblue;

+}

+

+div.qtlcharts .x.axis text {

+  dominant-baseline: hanging;

+  text-anchor: middle;

+}

+

+div.qtlcharts .x.axis text.title {

+  fill: slateblue;

+}

+

+/*div.qtlcharts line.axis.grid {

+  fill: none;

+  stroke-width: 1;

+  pointer-events: none;

+}

+

+div.qtlcharts line.x.axis.grid {

+  stroke: rgb(200, 200, 200);

+  stroke-width: 3;

+}

+

+div.qtlcharts line.y.axis.grid {

+  stroke: white;

+}*/

+

+div.qtlcharts .extent {

+  fill: #cac;

+  opacity: 0.3;

+}

+

+div.qtlcharts circle.selected {

+  fill: hotpink;

+  opacity: 1;

+}

+

+div.qtlcharts a {

+  color: #08c;

+  text-decoration: none;

+}

+

+div.qtlcharts a:hover {

+  color: #333;

+  text-decoration: underline;

+}

+

+

+/* figure captions */

+.caption {

+  font-family: Sans-serif;

+  font-size: 11pt;

+  margin-left: 60px;

+  width: 600px;

+}

+

+

+/* d3 tip for tool tips */

+.d3-tip {

+  background: darkslateblue;

+  color: #fff;

+  stroke: none;

+  font-weight: bold;

+  font-size: 16px;

+  font-family: sans-serif;

+  padding: 5px;

+}

+

+.d3-tip.e:after {

+  color: darkslateblue;

+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/parsley.css b/gn2/wqflask/static/new/css/parsley.css
new file mode 100644
index 00000000..7d244579
--- /dev/null
+++ b/gn2/wqflask/static/new/css/parsley.css
@@ -0,0 +1,20 @@
+/* Adapted from parsleyjs.org/documentation.html#parsleyclasses */
+
+input.parsley-success, textarea.parsley-success {
+  color: #468847 !important;
+  background-color: #DFF0D8 !important;
+  border: 1px solid #D6E9C6 !important;
+}
+input.parsley-error, textarea.parsley-error {
+  color: #B94A48 !important;
+  background-color: #F2DEDE !important;
+  border: 1px solid #EED3D7 !important;
+}
+ul.parsley-error-list {
+    font-size: 11px;
+    margin: 2px;
+    list-style-type:none;
+}
+ul.parsley-error-list li {
+    line-height: 11px;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/partial_correlations.css b/gn2/wqflask/static/new/css/partial_correlations.css
new file mode 100644
index 00000000..84a0877f
--- /dev/null
+++ b/gn2/wqflask/static/new/css/partial_correlations.css
@@ -0,0 +1,109 @@
+#partial-correlations-form {
+    width: 100%;
+    display: grid;
+    grid-column-gap: 1em;
+}
+
+#main-form {
+    grid-column-start: 1;
+    grid-column-end: 2;
+    text-align: left;
+}
+
+#form-display-area {
+    grid-column-start: 2;
+    grid-column-end: 3;
+}
+
+#part-corr-success {
+    grid-column-start: 1;
+    grid-column-end: 3;
+}
+
+td, th {
+    border: 1px solid;
+    text-align: left;
+    padding: 0.2em 0.5em 0.2em 0.7em;
+}
+
+tr:nth-of-type(2n) {
+    background: #F9F9F9;
+}
+
+.with-trait {
+    margin-left: 0.7em;
+    position: relative;
+    display: grid;
+    width: 100%;
+    grid-column-gap: 1em;
+    grid-template-columns: 1em 1fr;
+    text-align: left;
+}
+
+.with-trait:nth-of-type(2n) {
+    background: #E5E5FF;
+}
+
+.with-trait .selector-element {
+    grid-column: 1 / 2;
+    grid-row: 1 / 1;
+}
+
+.with-trait:first-of-type {
+    padding-top: 2.5em;
+}
+
+.with-trait:first-of-type label *:before{
+    position: absolute;
+    top: 0px;
+    
+    text-transform: capitalize;
+    font-weight: bolder;
+    content: attr(data-title);
+    background: #336699; /*#FFCCCC;*/
+    color: #FFFFFF;
+    padding: 0.5em;
+}
+
+.with-trait .label-element {
+    display: grid;
+    grid-column-gap: 0.5em;
+    grid-template-columns: 4fr 2fr 2fr 9fr 2fr 1fr 2fr;
+    grid-column: 2 / 2;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-dataset {
+    grid-column: 1;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-name {
+    grid-column: 2;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-symbol {
+    grid-column: 3;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-description {
+    grid-column: 4;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-location {
+    grid-column: 5;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-mean-expr {
+    grid-column: 6;
+    grid-row: 1 / 1;
+}
+
+.with-trait .label-element .trait-max-lrs {
+    grid-column: 7;
+    grid-row: 1 / 1;
+}
diff --git a/gn2/wqflask/static/new/css/prob_plot.css b/gn2/wqflask/static/new/css/prob_plot.css
new file mode 100644
index 00000000..2a1f8f53
--- /dev/null
+++ b/gn2/wqflask/static/new/css/prob_plot.css
@@ -0,0 +1,3 @@
+#prob_plot_title {
+  text-align: center;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/scatter-matrix.css b/gn2/wqflask/static/new/css/scatter-matrix.css
new file mode 100644
index 00000000..58150b26
--- /dev/null
+++ b/gn2/wqflask/static/new/css/scatter-matrix.css
@@ -0,0 +1,40 @@
+#scatter-matrix { font-size: 14px; }
+
+#scatter-matrix .axis { shape-rendering: crispEdges; }
+#scatter-matrix .axis line { stroke: #ddd; stroke-width: 1px; }
+#scatter-matrix .axis path { display: none; }
+#scatter-matrix .axis text { font-size: 0.8em; }
+
+rect.extent { fill: #000; fill-opacity: .125; stroke: #fff; }
+rect.frame { fill: #fff; fill-opacity: .7; stroke: #aaa; }
+
+circle { fill: #ccc; fill-opacity: .5; }
+
+.legend circle { fill-opacity: 1; }
+.legend text { font-size: 18px; font-style: oblique; }
+
+.cell text { pointer-events: none; }
+
+.color-0  { fill: #800; }
+.color-1  { fill: #080; }
+.color-2  { fill: #008; }
+.color-3  { fill: #440; }
+.color-4  { fill: #044; }
+.color-5  { fill: #404; }
+.color-6  { fill: #400; }
+.color-7  { fill: #040; }
+.color-8  { fill: #004; }
+.color-9  { fill: #cc0; }
+.color-10 { fill: #0cc; }
+.color-11 { fill: #c0c; }
+.color-12 { fill: #880; }
+.color-13 { fill: #088; }
+.color-14 { fill: #808; }
+.color-15 { fill: #c00; }
+.color-16 { fill: #0c0; }
+.color-17 { fill: #00c; }
+
+.scatter-matrix-filter-control ul { list-style: none; padding-left: 10px; }
+.scatter-matrix-variable-control ul { list-style: none; padding-left: 10px; }
+.scatter-matrix-drill-control ul { list-style: none; padding-left: 10px; }
+
diff --git a/gn2/wqflask/static/new/css/show_trait.css b/gn2/wqflask/static/new/css/show_trait.css
new file mode 100644
index 00000000..577bb5dd
--- /dev/null
+++ b/gn2/wqflask/static/new/css/show_trait.css
@@ -0,0 +1,311 @@
+tr .outlier {
+  background-color: #ffff99;
+}
+
+table.dataTable tbody tr.selected {
+  background-color: #ffee99;
+}
+
+table.metadata {
+    table-layout: fixed;
+}
+
+table.metadata td:nth-child(1) {
+    width: 10%;
+}
+
+table summary b {
+    cursor: pointer;
+    text-decoration: underline;
+}
+
+table details[open] {
+    width: 80%;
+}
+
+#bar_chart_container {
+  overflow-x:scroll;
+}
+
+div.sample_group {
+  overflow: auto; # needed because it contains float dataTable wrapper
+}
+
+.js-plotly-plot .plotly .modebar {
+  left: 100px;
+}
+
+table.dataTable thead th, table.dataTable tfoot th{
+  border-right: 1px solid white;
+  color: white;
+  background-color: #369;
+}
+
+table.dataTable thead .sorting_asc {
+  background-image: url("/js/DataTables/images/sort_asc_disabled.png");
+}
+table.dataTable thead .sorting_desc {
+  background-image: url("/js/DataTables/images/sort_desc_disabled.png");
+}
+
+table.dataTable thead th, table.dataTable tfoot {
+  padding: 4px 18px 4px 10px;
+}
+
+/* Header for a column with a numeric value that should be right-aligned */
+table.dataTable thead th div.numeric_header {
+  text-align: right;
+}
+
+table.dataTable tbody td {
+  padding: 2px 15px 0px 10px;
+}
+
+table.dataTable.cell-border tbody th, table.dataTable.cell-border tbody td {
+  border-top: 1px solid #ccc;
+  border-right: 1px solid #ccc;
+}
+table.dataTable.cell-border tbody tr th:first-child,
+table.dataTable.cell-border tbody tr td:first-child {
+  border-left: 1px solid #ccc;
+}
+
+.checkbox {
+  min-height: 20px;
+}
+
+.trait_value_input {
+  text-align: right;
+}
+
+.glyphicon {
+  position: relative;
+  top: 2px;
+}
+
+table.dataTable tbody td.column_name-Checkbox {
+  padding: 1px 0px 0px 9px; /* The left padding here is because text-align:center does not seem to be working properly. No idea why this is. */
+  text-align: center;
+  vertical-align: middle;
+}
+
+table.dataTable tbody td.column_name-Index {
+  padding: 2px 4px 0px 2px;
+  text-align: right;
+}
+
+/* the column with +/- in it that appears in the table when there's an SE column */
+table.dataTable tbody td.column_name-PlusMinus {
+  padding-left: 2px;
+  padding-right: 2px;
+  text-align: center;
+}
+
+table.dataTable tbody td.column_name-Value, table.dataTable tbody td.column_name-SE, table.dataTable tbody td.column_name-num_cases {
+  text-align: right;
+}
+
+div.btn-toolbar {
+  margin-bottom:15px;
+}
+
+/* div containing the form options for each segment of the trait page - correlations, statistics, mapping, etc */
+div.section-form-div {
+  padding: 20px;
+}
+
+table.left-float {
+  float: left;
+}
+
+div.scatterplot-btn-div {
+  margin-bottom:40px;
+}
+
+.min-expr-field {
+  width: 70px;
+}
+
+div.p-range-slider {
+  width: 200px;
+  margin-left: 15px;
+}
+
+span.p-range-lower {
+  margin-top: 5px;
+  font: 400 12px Arial;
+  color: #888; 
+  display: inline-block;
+}
+
+span.p-range-upper {
+  font: 400 12px Arial;
+  color: #888;
+  display: inline-block;
+  margin: 5px 0px 0px 170px;
+}
+
+input.corr-location {
+  width: 50px;
+  display: inline;
+}
+
+div.block-div {
+  margin-bottom: 10px;
+}
+
+div.block-div-2 {
+  margin-top:10px;
+  margin-bottom:10px;
+}
+
+div.normalize-div {
+  margin-top:10px;
+}
+
+div.main {
+  display: block;
+}
+
+div.options {
+  float: left;
+  width: 600px;
+  padding-top: 0px;
+}
+
+div.descriptions {
+  float: left;
+  width: 500px;
+  min-width: 20%;
+  margin-bottom: 0px;
+  padding-left: 15px;
+}
+
+div.covar-options {
+  padding-top: 7px;
+}
+
+.control-label {
+  text-align: right;
+}
+
+.chr-select, .maf-select, .scale-select, .reaper-ver-select {
+  width: 80px;
+}
+
+span.covar-text {
+  font-size: 13px;
+  font-weight: 400;
+}
+
+div.select-covar-div {
+  margin-bottom: 10px;
+}
+
+.select-covar-button {
+  width: 80px;
+  padding-right: 10px;
+}
+
+.selected-covariates {
+  overflow-y: scroll;
+  resize: none;
+  width: 400px;
+}
+
+.cofactor-input {
+  width: 160px;
+  display: inline-block;
+}
+
+.no-control-radio {
+  margin-left: 10px;
+}
+
+.map-method-text {
+  margin-top: 20px;
+}
+
+.rqtl-description {
+  padding-top: 40px;
+  display: none;
+}
+
+div.sample-table-container {
+  padding-bottom: 10px;
+}
+
+div.sample-table-search-container {
+  display: inline;
+  height: 40px;
+}
+
+input.sample-table-search {
+  width: 200px;
+  display: inline;
+  float: left;
+  vertical-align: top;
+}
+
+div.sample-table-export-container {
+  padding-left: 10px;
+  display: inline;
+}
+
+div.export-code-container {
+  padding-top: 20px;
+  width: 600px;
+  display: none;
+}
+
+.export-code-field {
+  padding-top: 0px;
+  padding-bottom: 0px;
+  height: 150px;
+}
+
+table.sample-table {
+  float: left;
+}
+
+input.trait-value-input {
+  text-align: right;
+}
+
+div.inline-div {
+  display: inline;
+}
+
+/* div.colorbox_border {
+  border: 1px solid grey;
+} */
+div#cboxContent {
+  /* box-shadow:
+  0 2.8px 2.2px rgba(0, 0, 0, 0.034),
+  0 6.7px 5.3px rgba(0, 0, 0, 0.048),
+  0 12.5px 10px rgba(0, 0, 0, 0.06),
+  0 22.3px 17.9px rgba(0, 0, 0, 0.072),
+  0 41.8px 33.4px rgba(0, 0, 0, 0.086),
+  0 100px 80px rgba(0, 0, 0, 0.12) */
+
+  padding: 10px 10px 5px 10px;
+
+  -moz-box-shadow: 3px 3px 5px #535353;
+  -webkit-box-shadow: 3px 3px 5px #535353;
+  box-shadow: 3px 3px 5px #535353;
+
+  -moz-border-radius: 6px 6px 6px 6px;
+  -webkit-border-radius: 6px;
+  border-radius: 6px 6px 6px 6px;
+
+  /* border: 2px solid grey; */
+}
+
+#cboxClose {
+  margin-right: 5px;
+  margin-bottom: 2px;
+}
+
+div.container {
+  min-width:750px;
+}
diff --git a/gn2/wqflask/static/new/css/snp_browser.css b/gn2/wqflask/static/new/css/snp_browser.css
new file mode 100644
index 00000000..a7942d2a
--- /dev/null
+++ b/gn2/wqflask/static/new/css/snp_browser.css
@@ -0,0 +1,58 @@
+.form_group {
+    margin-bottom 5px;
+}
+
+table.dataTable thead th {
+  vertical-align: bottom;
+}
+
+table.dataTable tbody tr.selected {
+  background-color: #ffee99;
+}
+
+table.dataTable thead .sorting,
+table.dataTable thead .sorting_asc,
+table.dataTable thead .sorting_desc,
+table.dataTable thead .sorting_asc_disabled,
+table.dataTable thead .sorting_desc_disabled {
+  background-repeat: no-repeat;
+  background-position: bottom right;
+}
+
+table.dataTable thead th{
+  border-right: 1px solid white;
+  color: white;
+  background-color: #369;
+}
+
+table.dataTable tbody td {
+  padding: 4px 20px 2px 10px;
+}
+
+td.A_allele_color {
+  background-color: #C33232
+}
+td.C_allele_color {
+  background-color: #1569C7
+}
+td.T_allele_color {
+  background-color: #CFCF32
+}
+td.G_allele_color {
+  background-color: #32C332
+}
+td.t_allele_color {
+  background-color: #FF6
+}
+td.c_allele_color {
+  background-color: #5CB3FF
+}
+td.a_allele_color {
+  background-color: #F66
+}
+td.g_allele_color {
+  background-color: #CF9
+}
+td.default_allele_color {
+  background-color: #FFFFFF
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/css/trait_list.css b/gn2/wqflask/static/new/css/trait_list.css
new file mode 100644
index 00000000..cc5a9eac
--- /dev/null
+++ b/gn2/wqflask/static/new/css/trait_list.css
@@ -0,0 +1,53 @@
+div.tool-button-container {
+    min-width: 1050px;
+}
+
+div.collection-table-options {
+    min-width: 1100px;
+}
+
+div.show-hide-container {
+    margin-bottom: 5px;
+    margin-top: 10px;
+}
+
+button.active {
+    background: #BEBEBE;
+    -webkit-box-shadow: inset 0px 0px 5px #c1c1c1;
+       -moz-box-shadow: inset 0px 0px 5px #c1c1c1;
+            box-shadow: inset 0px 0px 5px #c1c1c1;
+     outline: none;
+}
+
+div.dts {
+    display:block !important
+}
+
+div.dts div.dts_loading {
+    z-index:1
+}
+
+div.dts div.dts_label {
+    position:absolute;
+    right:10px;
+    background:rgba(0,0,0,0.8);
+    color:white;
+    box-shadow:3px 3px 10px rgba(0,0,0,0.5);
+    text-align:right;
+    border-radius:3px;
+    padding:0.4em;
+    z-index:2;
+    display:none
+}
+
+div.dts div.dataTables_scrollBody {
+    background:repeating-linear-gradient(45deg, #edeeff, #edeeff 10px, #fff 10px, #fff 20px)
+}
+
+div.dts div.dataTables_scrollBody table {
+    z-index:2
+}
+
+div.dts div.dataTables_paginate,div.dts div.dataTables_length{
+    display:none
+}
diff --git a/gn2/wqflask/static/new/css/typeahead-bootstrap.css b/gn2/wqflask/static/new/css/typeahead-bootstrap.css
new file mode 100644
index 00000000..87dd4b5d
--- /dev/null
+++ b/gn2/wqflask/static/new/css/typeahead-bootstrap.css
@@ -0,0 +1,94 @@
+span.twitter-typeahead .tt-menu,
+span.twitter-typeahead .tt-dropdown-menu {
+  cursor: pointer;
+  position: absolute;
+  top: 100%;
+  left: 0;
+  z-index: 1000;
+  display: none;
+  float: left;
+  min-width: 160px;
+  padding: 5px 0;
+  margin: 2px 0 0;
+  list-style: none;
+  font-size: 14px;
+  text-align: left;
+  background-color: #ffffff;
+  border: 1px solid #cccccc;
+  border: 1px solid rgba(0, 0, 0, 0.15);
+  border-radius: 4px;
+  -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175);
+  box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175);
+  background-clip: padding-box;
+}
+span.twitter-typeahead .tt-suggestion {
+  display: block;
+  padding: 3px 20px;
+  clear: both;
+  font-weight: normal;
+  line-height: 1.42857143;
+  color: #333333;
+  white-space: nowrap;
+}
+span.twitter-typeahead .tt-suggestion.tt-cursor,
+span.twitter-typeahead .tt-suggestion:hover,
+span.twitter-typeahead .tt-suggestion:focus {
+  color: #ffffff;
+  text-decoration: none;
+  outline: 0;
+  background-color: #337ab7;
+}
+.input-group.input-group-lg span.twitter-typeahead .form-control {
+  height: 46px;
+  padding: 10px 16px;
+  font-size: 18px;
+  line-height: 1.3333333;
+  border-radius: 6px;
+}
+.input-group.input-group-sm span.twitter-typeahead .form-control {
+  height: 30px;
+  padding: 5px 10px;
+  font-size: 12px;
+  line-height: 1.5;
+  border-radius: 3px;
+}
+span.twitter-typeahead {
+  width: 100%;
+}
+.input-group span.twitter-typeahead {
+  display: block !important;
+  height: 34px;
+}
+.input-group span.twitter-typeahead .tt-menu,
+.input-group span.twitter-typeahead .tt-dropdown-menu {
+  top: 32px !important;
+}
+.input-group span.twitter-typeahead:not(:first-child):not(:last-child) .form-control {
+  border-radius: 0;
+}
+.input-group span.twitter-typeahead:first-child .form-control {
+  border-top-left-radius: 4px;
+  border-bottom-left-radius: 4px;
+  border-top-right-radius: 0;
+  border-bottom-right-radius: 0;
+}
+.input-group span.twitter-typeahead:last-child .form-control {
+  border-top-left-radius: 0;
+  border-bottom-left-radius: 0;
+  border-top-right-radius: 4px;
+  border-bottom-right-radius: 4px;
+}
+.input-group.input-group-sm span.twitter-typeahead {
+  height: 30px;
+}
+.input-group.input-group-sm span.twitter-typeahead .tt-menu,
+.input-group.input-group-sm span.twitter-typeahead .tt-dropdown-menu {
+  top: 30px !important;
+}
+.input-group.input-group-lg span.twitter-typeahead {
+  height: 46px;
+}
+.input-group.input-group-lg span.twitter-typeahead .tt-menu,
+.input-group.input-group-lg span.twitter-typeahead .tt-dropdown-menu {
+  top: 46px !important;
+}
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/images/CITGLogo.png b/gn2/wqflask/static/new/images/CITGLogo.png
new file mode 100644
index 00000000..ae99fedb
--- /dev/null
+++ b/gn2/wqflask/static/new/images/CITGLogo.png
diff --git a/gn2/wqflask/static/new/images/Nif.png b/gn2/wqflask/static/new/images/Nif.png
new file mode 100644
index 00000000..e975a921
--- /dev/null
+++ b/gn2/wqflask/static/new/images/Nif.png
diff --git a/gn2/wqflask/static/new/images/PythonLogo.png b/gn2/wqflask/static/new/images/PythonLogo.png
new file mode 100644
index 00000000..b76dafba
--- /dev/null
+++ b/gn2/wqflask/static/new/images/PythonLogo.png
diff --git a/gn2/wqflask/static/new/images/a1.gif b/gn2/wqflask/static/new/images/a1.gif
new file mode 100644
index 00000000..283921a0
--- /dev/null
+++ b/gn2/wqflask/static/new/images/a1.gif
diff --git a/gn2/wqflask/static/new/images/arrowdown.gif b/gn2/wqflask/static/new/images/arrowdown.gif
new file mode 100644
index 00000000..577e5476
--- /dev/null
+++ b/gn2/wqflask/static/new/images/arrowdown.gif
diff --git a/gn2/wqflask/static/new/images/edit.gif b/gn2/wqflask/static/new/images/edit.gif
new file mode 100644
index 00000000..45b314ee
--- /dev/null
+++ b/gn2/wqflask/static/new/images/edit.gif
diff --git a/gn2/wqflask/static/new/images/ipad_icon3.png b/gn2/wqflask/static/new/images/ipad_icon3.png
new file mode 100644
index 00000000..97060e97
--- /dev/null
+++ b/gn2/wqflask/static/new/images/ipad_icon3.png
diff --git a/gn2/wqflask/static/new/images/question_mark.jpg b/gn2/wqflask/static/new/images/question_mark.jpg
new file mode 100644
index 00000000..82df7e81
--- /dev/null
+++ b/gn2/wqflask/static/new/images/question_mark.jpg
diff --git a/gn2/wqflask/static/new/images/step1.gif b/gn2/wqflask/static/new/images/step1.gif
new file mode 100644
index 00000000..42d2bc7d
--- /dev/null
+++ b/gn2/wqflask/static/new/images/step1.gif
diff --git a/gn2/wqflask/static/new/images/step2.gif b/gn2/wqflask/static/new/images/step2.gif
new file mode 100644
index 00000000..b3dca656
--- /dev/null
+++ b/gn2/wqflask/static/new/images/step2.gif
diff --git a/gn2/wqflask/static/new/images/step3.gif b/gn2/wqflask/static/new/images/step3.gif
new file mode 100644
index 00000000..0e0c7ea2
--- /dev/null
+++ b/gn2/wqflask/static/new/images/step3.gif
diff --git a/gn2/wqflask/static/new/javascript/auth/search.js b/gn2/wqflask/static/new/javascript/auth/search.js
new file mode 100644
index 00000000..d094cebf
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/auth/search.js
@@ -0,0 +1,172 @@
+class InvalidCSSIDSelector extends Error {
+    constructor(message) {
+	super(message);
+	this.name = "InvalidCSSIDSelector";
+    }
+}
+
+class InvalidDataAttributeName extends Error {
+    constructor(message) {
+	super(message);
+	this.name = "InvalidDataAttributeName";
+    }
+}
+
+/**
+ * CSSIDSelector: A CSS ID Selector
+ * @param {String} A CSS selector of the form '#...'
+ */
+class CSSIDSelector {
+    constructor(selector) {
+	if(!selector.startsWith("#")) {
+	    throw new InvalidCSSIDSelector(
+		"Expected the CSS selector to begin with a `#` character.");
+	}
+	let id_str = selector.slice(1, selector.length);
+	if(document.getElementById(id_str) == null) {
+	    throw new InvalidCSSIDSelector(
+		"Element with ID '" + id_str + "' does not exist.");
+	}
+	this.selector = selector;
+    }
+}
+
+/**
+ * TableDataSource: A type to represent a table's data source
+ * @param {String} A CSS selector for an ID
+ * @param {String} A `data-*` attribute name
+ */
+class TableDataSource {
+    constructor(table_id, data_attribute_name, checkbox_creation_function) {
+	this.table_id = new CSSIDSelector(table_id);
+	let data = document.querySelector(
+	    table_id).getAttribute(data_attribute_name);
+	if(data == null) {
+	    throw new InvalidDataAttributeName(
+		"data-* attribute '" + data_attribute_name + "' does not exist " +
+		    "for table with ID '" + table_id.slice(1, table_id.length) +
+		    "'.");
+	} else {
+	    this.data_attribute_name = data_attribute_name;
+	}
+	this.checkbox_creation_function = checkbox_creation_function;
+    }
+}
+
+/**
+ * Render the table
+ * @param {String} The selector for the table's ID
+ * @param {String} The name of the data-* attribute holding the table's data
+ * @param {Function} The function to call to generate the appropriate checkbox
+ */
+function render_table(table_data_source) {
+    table_id = table_data_source.table_id.selector;
+    data_attr_name = table_data_source.data_attribute_name;
+    $(table_id + " tbody tr").remove();
+    table_data = JSON.parse($(table_id).attr(data_attr_name)).sort((d1, d2) => {
+	return (d1.dataset_name > d2.dataset_name ? 1 : (
+	    d1.dataset_name < d2.dataset_name ? -1 : 0))
+    });
+    if(table_data.length < 1) {
+	row = $("<tr>")
+	cell = $('<td colspan="100%" align="center">');
+	cell.append(
+	    $('<span class="glyphicon glyphicon-info-sign text-info">'));
+	cell.append("&nbsp;");
+	cell.append("No genotype datasets remaining.");
+	row.append(cell);
+	$(table_id + " tbody").append(row);
+    }
+    table_data.forEach(function(dataset) {
+	row = $("<tr>")
+	row.append(table_data_source.checkbox_creation_function(dataset));
+	row.append(table_cell(dataset.InbredSetName));
+	row.append(table_cell(dataset.dataset_name));
+	row.append(table_cell(dataset.dataset_fullname));
+	row.append(table_cell(dataset.dataset_shortname));
+	$(table_id + " tbody").append(row);
+    });
+}
+
+function in_array(items, filter_fn) {
+    return items.filter(filter_fn).length > 0;
+}
+
+function remove_from_table_data(dataset, table_data_source, filter_fn) {
+    let table_id = table_data_source.table_id.selector;
+    let data_attr_name = table_data_source.data_attribute_name;
+    without_dataset = JSON.parse($(table_id).attr(data_attr_name)).filter(
+	filter_fn);
+    $(table_id).attr(data_attr_name, JSON.stringify(without_dataset));
+}
+
+function add_to_table_data(dataset, table_data_source, filter_fn) {
+    let table_id = table_data_source.table_id.selector;
+    let data_attr_name = table_data_source.data_attribute_name;
+    table_data = JSON.parse($(table_id).attr(data_attr_name));
+    if(!in_array(table_data, filter_fn)) {
+	table_data.push(dataset);
+    }
+    $(table_id).attr(data_attr_name, JSON.stringify(Array.from(table_data)));
+}
+
+/**
+ * Switch the dataset/trait from search table to selection table and vice versa
+ * @param {Object} A dataset/trait object
+ * @param {TableDataSource} The source table for the dataset/trait
+ * @param {TableDataSource} The destination table for the dataset/trait
+ */
+function select_deselect(item, source, destination, filter_fn, render_fn=render_table) {
+    dest_selector = destination.table_id.selector
+    dest_data = JSON.parse(
+	$(dest_selector).attr(destination.data_attribute_name));
+    add_to_table_data(item, destination, filter_fn); // Add to destination table
+    remove_from_table_data(item, source, (arg) => {return !filter_fn(arg)}); // Remove from source table
+    /***** BEGIN: Re-render tables *****/
+    render_fn(destination);
+    render_fn(source);
+    /***** END: Re-render tables *****/
+}
+
+function debounce(func, delay=500) {
+    var timeout;
+    return function search(event) {
+	clearTimeout(timeout);
+	timeout = setTimeout(func, delay);
+    };
+}
+
+/**
+ * Build a checkbox
+ * @param {Dataset Object} A JSON.stringify-able object
+ * @param {String} The name to assign the checkbox
+ */
+function build_checkbox(data_object, checkbox_name, checkbox_aux_classes="", checked=false) {
+    cell = $("<td>");
+    check = $(
+	'<input type="checkbox" class="checkbox" ' +
+	    'name="' + checkbox_name + '">');
+    check.val(JSON.stringify(data_object));
+    check.prop("checked", checked);
+    auxilliary_classes = checkbox_aux_classes.trim();
+    if(Boolean(auxilliary_classes)) {
+	check.attr("class",
+		   check.attr("class") + " " + auxilliary_classes.trim());
+    }
+    cell.append(check);
+    return cell;
+}
+
+function link_checkbox(dataset) {
+    return build_checkbox(dataset, "selected", "checkbox-selected", true);
+}
+
+function search_checkbox(dataset) {
+    return build_checkbox(dataset, "search_datasets", "checkbox-search");
+}
+
+function table_cell(value) {
+    cell = $("<td>");
+    cell.html(value);
+    return cell;
+}
diff --git a/gn2/wqflask/static/new/javascript/auth/search_genotypes.js b/gn2/wqflask/static/new/javascript/auth/search_genotypes.js
new file mode 100644
index 00000000..d1b8ed9e
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/auth/search_genotypes.js
@@ -0,0 +1,95 @@
+function toggle_link_button() {
+    num_groups = $("#frm-link-genotypes select option").length - 1;
+    num_selected = JSON.parse(
+	$("#tbl-link-genotypes").attr("data-selected-datasets")).length;
+    if(num_groups > 0 && num_selected > 0) {
+	$("#frm-link-genotypes input[type='submit']").prop("disabled", false);
+    } else {
+	$("#frm-link-genotypes input[type='submit']").prop("disabled", true);
+    }
+}
+
+function search_genotypes() {
+    query = document.getElementById("txt-query").value;
+    selected = JSON.parse(document.getElementById(
+	"tbl-link-genotypes").getAttribute("data-selected-datasets"));
+    species_name = document.getElementById("txt-species-name").value
+    search_endpoint = "/auth/data/genotype/search"
+    search_table = new TableDataSource(
+	"#tbl-genotypes", "data-datasets", search_checkbox);
+    $.ajax(
+	search_endpoint,
+	{
+	    "method": "POST",
+	    "contentType": "application/json; charset=utf-8",
+	    "dataType": "json",
+	    "data": JSON.stringify({
+		"query": query,
+		"selected": selected,
+		"dataset_type": "genotype",
+		"species_name": species_name}),
+	    "error": function(jqXHR, textStatus, errorThrown) {
+		data = jqXHR.responseJSON
+		elt = document.getElementById("search-error").setAttribute(
+		    "style", "display: block;");
+		document.getElementById("search-error-text").innerHTML = (
+		    data.error + " (" + data.status_code + "): " +
+			data.error_description);
+		document.getElementById("tbl-genotypes").setAttribute(
+		    "data-datasets", JSON.stringify([]));
+		render_table(search_table);
+	    },
+	    "success": function(data, textStatus, jqXHR) {
+		document.getElementById("search-error").setAttribute(
+		    "style", "display: none;");
+		document.getElementById("tbl-genotypes").setAttribute(
+		    "data-datasets", JSON.stringify(data));
+		render_table(search_table);
+	    }
+	});
+}
+
+/**
+ * Return function to check whether `dataset` is in array of `datasets`.
+ * @param {GenotypeDataset} A genotype dataset.
+ * @param {Array} An array of genotype datasets.
+ */
+function make_filter(trait) {
+    return (dst) => {
+	return (dst.SpeciesId == dataset.SpeciesId &&
+		dst.InbredSetId == dataset.InbredSetId &&
+		dst.GenoFreezeId == dataset.GenoFreezeId);
+    };
+}
+
+$(document).ready(function() {
+    let search_table = new TableDataSource(
+	"#tbl-genotypes", "data-datasets", search_checkbox);
+    let link_table = new TableDataSource(
+	"#tbl-link-genotypes", "data-selected-datasets", link_checkbox);
+
+    $("#frm-search-traits").submit(function(event) {
+	event.preventDefault();
+	return false;
+    });
+
+    $("#txt-query").keyup(debounce(search_genotypes));
+
+    $("#tbl-genotypes").on("change", ".checkbox-search", function(event) {
+        if(this.checked) {
+	    dataset = JSON.parse(this.value);
+	    select_deselect(
+		dataset, search_table, link_table, make_filter(dataset));
+	    toggle_link_button();
+        }
+    });
+
+    $("#tbl-link-genotypes").on("change", ".checkbox-selected", function(event) {
+	if(!this.checked) {
+	    dataset = JSON.parse(this.value);
+	    select_deselect(
+		dataset, link_table, search_table, make_filter(dataset));
+	    toggle_link_button();
+	}
+    });
+});
diff --git a/gn2/wqflask/static/new/javascript/auth/search_mrna.js b/gn2/wqflask/static/new/javascript/auth/search_mrna.js
new file mode 100644
index 00000000..3eca4ed2
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/auth/search_mrna.js
@@ -0,0 +1,97 @@
+function toggle_link_button() {
+    num_groups = $("#frm-link select option").length - 1;
+    num_selected = JSON.parse(
+	$("#tbl-link").attr("data-datasets")).length;
+    if(num_groups > 0 && num_selected > 0) {
+	$("#frm-link input[type='submit']").prop("disabled", false);
+    } else {
+	$("#frm-link input[type='submit']").prop("disabled", true);
+    }
+}
+
+function search_mrna() {
+    query = document.getElementById("txt-query").value;
+    selected = JSON.parse(document.getElementById(
+	"tbl-link").getAttribute("data-datasets"));
+    species_name = document.getElementById("txt-species-name").value
+    search_endpoint = "/auth/data/mrna/search"
+    search_table = new TableDataSource(
+	"#tbl-search", "data-datasets", search_checkbox);
+    $.ajax(
+	search_endpoint,
+	{
+	    "method": "POST",
+	    "contentType": "application/json; charset=utf-8",
+	    "dataType": "json",
+	    "data": JSON.stringify({
+		"query": query,
+		"selected": selected,
+		"dataset_type": "mrna",
+		"species_name": species_name}),
+	    "error": function(jqXHR, textStatus, errorThrown) {
+		error_data = jqXHR.responseJSON
+		console.debug("ERROR_DATA:", error_data);
+		elt = document.getElementById("search-error").setAttribute(
+		    "style", "display: block;");
+		document.getElementById("search-error-text").innerHTML = (
+		    error_data.error + " (" + error_data.status_code + "): " +
+			error_data.error_description);
+		document.getElementById("tbl-search").setAttribute(
+		    "data-datasets", JSON.stringify([]));
+		render_table(search_table);
+	    },
+	    "success": function(data, textStatus, jqXHR) {
+		document.getElementById("search-error").setAttribute(
+		    "style", "display: none;");
+		document.getElementById("tbl-search").setAttribute(
+		    "data-datasets", JSON.stringify(data));
+		render_table(search_table);
+	    }
+	});
+}
+
+/**
+ * Make function to check whether `dataset` is in array of `datasets`.
+ * @param {mRNADataset} A mrna dataset.
+ * @param {Array} An array of mrna datasets.
+ */
+function make_filter(dataset) {
+    return (dst) => {
+	return (dst.SpeciesId == dataset.SpeciesId &&
+		dst.InbredSetId == dataset.InbredSetId &&
+		dst.ProbeFreezeId == dataset.ProbeFreezeId &&
+		dst.ProbeSetFreezeId == dataset.ProbeSetFreezeId);
+    };
+}
+
+$(document).ready(function() {
+    let search_table = new TableDataSource(
+	"#tbl-search", "data-datasets", search_checkbox);
+    let link_table = new TableDataSource(
+	"#tbl-link", "data-datasets", link_checkbox);
+
+    $("#frm-search").submit(function(event) {
+	event.preventDefault();
+	return false;
+    });
+
+    $("#txt-query").keyup(debounce(search_mrna));
+
+    $("#tbl-search").on("change", ".checkbox-search", function(event) {
+        if(this.checked) {
+	    dataset = JSON.parse(this.value);
+	    select_deselect(
+		dataset, search_table, link_table, make_filter(dataset));
+	    toggle_link_button();
+        }
+    });
+
+    $("#tbl-link").on("change", ".checkbox-selected", function(event) {
+	if(!this.checked) {
+	    dataset = JSON.parse(this.value);
+	    select_deselect(
+		dataset, link_table, search_table, make_filter(dataset));
+	    toggle_link_button();
+	}
+    });
+});
diff --git a/gn2/wqflask/static/new/javascript/auth/search_phenotypes.js b/gn2/wqflask/static/new/javascript/auth/search_phenotypes.js
new file mode 100644
index 00000000..99ecb16e
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/auth/search_phenotypes.js
@@ -0,0 +1,188 @@
+/**
+ * Global variables: Bad idea - figure out how to pass them down a call stack.
+ */
+search_table = new TableDataSource(
+    "#tbl-phenotypes", "data-traits", (trait) => {
+	return build_checkbox(trait, "search_traits", "checkbox-search");
+    });
+link_table = new TableDataSource(
+    "#tbl-link-phenotypes", "data-traits", (trait) => {
+	return build_checkbox(
+	    trait, "selected", "checkbox-selected", checked=true);
+    });
+
+/**
+ * Toggle the state for the "Link Traits" button
+ */
+function toggle_link_button() {
+    num_groups = $("#frm-link-phenotypes select option").length - 1;
+    num_selected = JSON.parse(
+	$("#tbl-link-phenotypes").attr("data-traits")).length;
+    if(num_groups > 0 && num_selected > 0) {
+	$("#frm-link-phenotypes input[type='submit']").prop("disabled", false);
+    } else {
+	$("#frm-link-phenotypes input[type='submit']").prop("disabled", true);
+    }
+}
+
+/**
+ * Default error function: print out debug messages
+ */
+function default_error_fn(jqXHR, textStatus, errorThrown) {
+    console.debug("XHR:", jqXHR);
+    console.debug("STATUS:", textStatus);
+    console.debug("ERROR:", errorThrown);
+}
+
+/**
+ * Render the table(s) for the phenotype traits
+ * @param {TableDataSource} The table to render
+ */
+function render_pheno_table(table_data_source) {
+    table_id = table_data_source.table_id.selector;
+    data_attr_name = table_data_source.data_attribute_name;
+    $(table_id + " tbody tr").remove();
+    table_data = JSON.parse($(table_id).attr(data_attr_name)).sort((t1, t2) => {
+	return (t1.name > t2.name ? 1 : (t1.name < t2.name ? -1 : 0))
+    });
+    if(table_data.length < 1) {
+	row = $("<tr>")
+	cell = $('<td colspan="100%" align="center">');
+	cell.append(
+	    $('<span class="glyphicon glyphicon-info-sign text-info">'));
+	cell.append("&nbsp;");
+	cell.append("No phenotype traits to select from.");
+	row.append(cell);
+	$(table_id + " tbody").append(row);
+    }
+    table_data.forEach(function(trait) {
+	row = $("<tr>")
+	row.append(table_data_source.checkbox_creation_function(trait));
+	row.append(table_cell(trait.name));
+	row.append(table_cell(trait.group));
+	row.append(table_cell(trait.dataset));
+	row.append(table_cell(trait.dataset_fullname));
+	row.append(table_cell(trait.description));
+	row.append(table_cell(trait.authors.join(", ")));
+	row.append(table_cell(
+	    '<a href="' + trait.pubmed_link +
+		'" title="Pubmed link for trait ' + trait.name + '.">' +
+		trait.year + "</a>"));
+	row.append(table_cell("Chr:" + trait.geno_chr + "@" + trait.geno_mb));
+	row.append(table_cell(trait.lrs));
+	row.append(table_cell(trait.additive));
+	$(table_id + " tbody").append(row);
+    });
+}
+
+function display_search_results(data, textStatus, jqXHR) {
+    if(data.status == "queued" || data.status == "started") {
+	setTimeout(() => {
+	    fetch_search_results(data.job_id, display_search_results);
+	}, 250);
+	return;
+    }
+    if(data.status == "completed") {
+	$("#tbl-phenotypes").attr(
+	    "data-traits", JSON.stringify(data.search_results));
+	// Remove this reference to global variable
+	render_pheno_table(search_table);
+    }
+    $("#txt-search").prop("disabled", false);
+}
+
+/**
+ * Fetch the search results
+ * @param {UUID}: The job id to fetch data for
+ */
+function fetch_search_results(job_id, success, error=default_error_fn) {
+    host = $("#frm-search-traits").attr("data-gn-server-url");
+    endpoint = host + "auth/data/search/phenotype/" + job_id
+    $("#txt-search").prop("disabled", true);
+    $.ajax(
+	endpoint,
+	{
+	    "method": "GET",
+	    "contentType": "application/json; charset=utf-8",
+	    "dataType": "json",
+	    "error": error,
+	    "success": success
+	}
+    );
+}
+
+function search_phenotypes() {
+    query = document.getElementById("txt-query").value;
+    selected = JSON.parse(document.getElementById(
+	"tbl-link-phenotypes").getAttribute("data-traits"));
+    species_name = document.getElementById("txt-species-name").value
+    per_page = document.getElementById("txt-per-page").value
+    search_table = new TableDataSource(
+	"#tbl-phenotypes", "data-traits", search_checkbox);
+    endpoint = "/auth/data/phenotype/search"
+    $.ajax(
+	endpoint,
+	{
+	    "method": "POST",
+	    "contentType": "application/json; charset=utf-8",
+	    "dataType": "json",
+	    "data": JSON.stringify({
+		"query": query,
+		"species_name": species_name,
+		"dataset_type": "phenotype",
+		"per_page": per_page,
+		"selected_traits": selected
+	    }),
+	    "error": default_error_fn,
+	    "success": (data, textStatus, jqXHR) => {
+		fetch_search_results(data.job_id, display_search_results);
+	    }
+	});
+}
+
+/**
+ * Return a function to check whether `trait` is in array of `traits`.
+ * @param {PhenotypeTrait} A phenotype trait.
+ * @param {Array} An array of phenotype traits.
+ */
+function make_filter(trait) {
+    return (trt) => {
+	return (trt.species == trait.species &&
+		trt.group == trait.group &&
+		trt.dataset == trait.dataset &&
+		trt.name == trait.name);
+    };
+}
+
+$(document).ready(function() {
+    $("#frm-search-traits").submit(event => {
+	event.preventDefault();
+	return false;
+    });
+
+    $("#txt-query").keyup(debounce(search_phenotypes));
+
+    $("#tbl-link-phenotypes").on("change", ".checkbox-selected", function(event) {
+	if(!this.checked) {
+	    trait = JSON.parse(this.value);
+	    select_deselect(trait, link_table, search_table,
+			    make_filter(trait), render_pheno_table);
+	    toggle_link_button();
+	}
+    });
+
+    $("#tbl-phenotypes").on("change", ".checkbox-search", function(event) {
+	if(this.checked) {
+	    trait = JSON.parse(this.value)
+	    select_deselect(trait, search_table, link_table,
+			    make_filter(trait), render_pheno_table);
+	    toggle_link_button();
+	}
+    });
+
+    setTimeout(() => {
+	fetch_search_results(
+	    $("#tbl-phenotypes").attr("data-initial-job-id"),
+	    display_search_results);
+    }, 500);
+});
diff --git a/gn2/wqflask/static/new/javascript/auto_hide_column.js b/gn2/wqflask/static/new/javascript/auto_hide_column.js
new file mode 100644
index 00000000..1a4dc039
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/auto_hide_column.js
@@ -0,0 +1,21 @@
+    function filterDatatable(datatable){
+        let invalidColumns=[]
+        let columnCount=datatable.columns().header().length;
+        let numberOfRows=datatable.rows().count();
+        for (let col=0; col<columnCount; col++){
+            colObj = datatable.column(col).nodes().to$();
+            allNAs = true;
+            for (let i=0;i<numberOfRows;i++){
+                cellContent = colObj[i].childNodes[0].data
+                if (cellContent != "N/A" && cellContent != ""){
+                    allNAs = false;
+                    break;
+                }
+            }
+            if (allNAs){
+                invalidColumns.push(col)
+            }
+        }
+        return datatable.columns(invalidColumns).visible(false);
+
+    }
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/bar_chart.js b/gn2/wqflask/static/new/javascript/bar_chart.js
new file mode 100644
index 00000000..d8540580
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/bar_chart.js
@@ -0,0 +1,498 @@
+// Generated by CoffeeScript 1.9.2
+(function() {
+  var Bar_Chart, root,
+    bind = function(fn, me){ return function(){ return fn.apply(me, arguments); }; },
+    indexOf = [].indexOf || function(item) { for (var i = 0, l = this.length; i < l; i++) { if (i in this && this[i] === item) return i; } return -1; },
+    hasProp = {}.hasOwnProperty;
+
+  root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+  Bar_Chart = (function() {
+    function Bar_Chart(sample_lists) {
+      this.add_legend_discrete = bind(this.add_legend_discrete, this);
+      this.add_legend_continuous = bind(this.add_legend_continuous, this);
+      this.remove_legend = bind(this.remove_legend, this);
+      this.add_legend = bind(this.add_legend, this);
+      var key, l1, l1_names, l2, l3, longest_sample_name_len, s, sample, x;
+      this.sample_lists = {};
+      l1 = this.sample_lists['samples_primary'] = sample_lists[0] || [];
+      l2 = this.sample_lists['samples_other'] = sample_lists[1] || [];
+      l1_names = (function() {
+        var j, len, results;
+        results = [];
+        for (j = 0, len = l1.length; j < len; j++) {
+          x = l1[j];
+          results.push(x.name);
+        }
+        return results;
+      })();
+      l3 = l1.concat((function() {
+        var j, len, ref, results;
+        results = [];
+        for (j = 0, len = l2.length; j < len; j++) {
+          x = l2[j];
+          if (ref = x.name, indexOf.call(l1_names, ref) < 0) {
+            results.push(x);
+          }
+        }
+        return results;
+      })());
+      this.sample_lists['samples_all'] = l3;
+      longest_sample_name_len = d3.max((function() {
+        var j, len, results;
+        results = [];
+        for (j = 0, len = l3.length; j < len; j++) {
+          sample = l3[j];
+          results.push(sample.name.length);
+        }
+        return results;
+      })());
+      this.margin = {
+        top: 20,
+        right: 20,
+        bottom: longest_sample_name_len * 6,
+        left: 40
+      };
+      this.attributes = (function() {
+        var results;
+        results = [];
+        for (key in sample_lists[0][0]["extra_attributes"]) {
+          results.push(key);
+        }
+        return results;
+      })();
+      this.sample_attr_vals = (function() {
+        var j, len, ref, results;
+        ref = this.sample_lists['samples_all'];
+        results = [];
+        for (j = 0, len = ref.length; j < len; j++) {
+          s = ref[j];
+          if (s.value !== null) {
+            results.push(this.extra(s));
+          }
+        }
+        return results;
+      }).call(this);
+      this.get_distinct_attr_vals();
+      this.get_attr_color_dict(this.distinct_attr_vals);
+      this.attribute_name = "None";
+      this.sort_by = "name";
+      this.chart = null;
+      this.select_attribute_box = $("#color_attribute");
+      d3.select("#color_attribute").on("change", (function(_this) {
+        return function() {
+          _this.attribute_name = _this.select_attribute_box.val();
+          return _this.rebuild_bar_graph();
+        };
+      })(this));
+      $(".sort_by_value").on("click", (function(_this) {
+        return function() {
+          console.log("sorting by value");
+          _this.sort_by = "value";
+          return _this.rebuild_bar_graph();
+        };
+      })(this));
+      $(".sort_by_name").on("click", (function(_this) {
+        return function() {
+          console.log("sorting by name");
+          _this.sort_by = "name";
+          return _this.rebuild_bar_graph();
+        };
+      })(this));
+      d3.select("#color_by_trait").on("click", (function(_this) {
+        return function() {
+          return _this.open_trait_selection();
+        };
+      })(this));
+    }
+
+    Bar_Chart.prototype.value = function(sample) {
+      return this.value_dict[sample.name].value;
+    };
+
+    Bar_Chart.prototype.variance = function(sample) {
+      return this.value_dict[sample.name].variance;
+    };
+
+    Bar_Chart.prototype.extra = function(sample) {
+      var attr_vals, attribute, j, len, ref;
+      attr_vals = {};
+      ref = this.attributes;
+      for (j = 0, len = ref.length; j < len; j++) {
+        attribute = ref[j];
+        attr_vals[attribute] = sample["extra_attributes"][attribute];
+      }
+      return attr_vals;
+    };
+
+    Bar_Chart.prototype.redraw = function(samples_dict, selected_group) {
+      var x;
+      this.value_dict = samples_dict[selected_group];
+      this.raw_data = (function() {
+        var j, len, ref, results;
+        ref = this.sample_lists[selected_group];
+        results = [];
+        for (j = 0, len = ref.length; j < len; j++) {
+          x = ref[j];
+          if (x.name in this.value_dict && this.value(x) !== null) {
+            results.push(x);
+          }
+        }
+        return results;
+      }).call(this);
+      return this.rebuild_bar_graph();
+    };
+
+    Bar_Chart.prototype.rebuild_bar_graph = function() {
+      var container, h, raw_data;
+      raw_data = this.raw_data.slice();
+      if (this.sort_by === 'value') {
+        raw_data = raw_data.sort((function(_this) {
+          return function(x, y) {
+            return _this.value(x) - _this.value(y);
+          };
+        })(this));
+      }
+      console.log("raw_data: ", raw_data);
+      h = 600;
+      container = $("#bar_chart_container");
+      container.height(h + this.margin.top + this.margin.bottom);
+      if (this.chart === null) {
+        this.chart = nv.models.multiBarChart().height(h).errorBarColor((function(_this) {
+          return function() {
+            return 'red';
+          };
+        })(this)).reduceXTicks(false).staggerLabels(false).showControls(false).showLegend(false);
+        this.chart.multibar.dispatch.on('elementMouseover.tooltip', (function(_this) {
+          return function(evt) {
+            var k, ref, v;
+            evt.value = _this.chart.x()(evt.data);
+            evt['series'] = [
+              {
+                key: 'Value',
+                value: evt.data.y,
+                color: evt.color
+              }
+            ];
+            if (evt.data.yErr) {
+              evt['series'].push({
+                key: 'SE',
+                value: evt.data.yErr
+              });
+            }
+            if (evt.data.attr) {
+              ref = evt.data.attr;
+              for (k in ref) {
+                v = ref[k];
+                evt['series'].push({
+                  key: k,
+                  value: v
+                });
+              }
+            }
+            return _this.chart.tooltip.data(evt).hidden(false);
+          };
+        })(this));
+        this.chart.tooltip.valueFormatter(function(d, i) {
+          return d;
+        });
+      }
+      return nv.addGraph((function(_this) {
+        return function() {
+          var d, s, values;
+          _this.remove_legend();
+          values = (function() {
+            var j, len, results;
+            results = [];
+            for (j = 0, len = raw_data.length; j < len; j++) {
+              s = raw_data[j];
+              results.push({
+                x: s.name,
+                y: this.value(s),
+                yErr: this.variance(s) || 0,
+                attr: s.extra_attributes
+              });
+            }
+            return results;
+          }).call(_this);
+          if (_this.attribute_name !== "None") {
+            _this.color_dict = _this.attr_color_dict[_this.attribute_name];
+            _this.chart.barColor(function(d) {
+              return _this.color_dict[d.attr[_this.attribute_name]];
+            });
+            _this.add_legend();
+          } else if (typeof _this.trait_color_dict !== 'undefined') {
+            _this.color_dict = _this.trait_color_dict;
+            _this.chart.barColor(function(d) {
+              return _this.color_dict[d['x']];
+            });
+          } else {
+            _this.chart.barColor(function() {
+              return 'steelblue';
+            });
+          }
+          _this.chart.width(raw_data.length * 20);
+          //User should be able to change Y domain, but should still have good default
+          _this.chart.yDomain([
+            0.95 * _.min((function() { // ZS: Decreasing this constant decreases the min Y axis value
+              var j, len, results;
+              results = [];
+              for (j = 0, len = values.length; j < len; j++) {
+                d = values[j];
+                results.push(d.y - 0.5 * d.yErr); //ZS: the 0.5 was originally 1.5
+              }
+              return results;
+            })()), 1.05 * _.max((function() { // ZS: Decreasing this constant decreases the max Y axis value
+              var j, len, results;
+              results = [];
+              for (j = 0, len = values.length; j < len; j++) {
+                d = values[j];
+                results.push(d.y + 0.5 * d.yErr); // //ZS: the 0.5 was originally 1.5
+              }
+              return results;
+            })())
+          ]);
+          console.log("values: ", values);
+
+          decimal_exists = "False";
+          for(i=0; i < values.length; i++){
+              if (values[i]['y'] % 1 != 0){
+                  decimal_exists = "True";
+                  break;
+              }
+          }
+          if (decimal_exists == "False"){
+              _this.chart.yAxis.tickFormat(d3.format('d'))
+          }
+          d3.select("#bar_chart_container svg").datum([
+            {
+              values: values
+            }
+          ]).style('width', raw_data.length * 20 + 'px').transition().duration(1000).call(_this.chart);
+          d3.select("#bar_chart_container .nv-x").selectAll('.tick text').style("font-size", "12px").style("text-anchor", "end").attr("dx", "-.8em").attr("dy", "-.3em").attr("transform", function(d) {
+            return "rotate(-90)";
+          });
+          return _this.chart;
+        };
+      })(this));
+    };
+
+    Bar_Chart.prototype.get_attr_color_dict = function(vals) {
+      var color, color_range, discrete, distinct_vals, i, j, key, l, len, len1, results, this_color_dict, value;
+      this.attr_color_dict = {};
+      this.is_discrete = {};
+      this.minimum_values = {};
+      this.maximum_values = {};
+      console.log("vals:", vals);
+      results = [];
+      for (key in vals) {
+        if (!hasProp.call(vals, key)) continue;
+        distinct_vals = vals[key];
+        this.min_val = d3.min(distinct_vals);
+        this.max_val = d3.max(distinct_vals);
+        this_color_dict = {};
+        discrete = distinct_vals.length < 10;
+        if (discrete) {
+          color = d3.scale.category10();
+          for (i = j = 0, len = distinct_vals.length; j < len; i = ++j) {
+            value = distinct_vals[i];
+            this_color_dict[value] = color(i);
+          }
+        } else {
+          console.log("distinct_values:", distinct_vals);
+          if (_.every(distinct_vals, (function(_this) {
+            return function(d) {
+              if (isNaN(d)) {
+                return false;
+              } else {
+                return true;
+              }
+            };
+          })(this))) {
+            color_range = d3.scale.linear().domain([this.min_val, this.max_val]).range([0, 255]);
+            for (i = l = 0, len1 = distinct_vals.length; l < len1; i = ++l) {
+              value = distinct_vals[i];
+              console.log("color_range(value):", parseInt(color_range(value)));
+              this_color_dict[value] = d3.rgb(parseInt(color_range(value)), 0, 0);
+            }
+          }
+        }
+        this.attr_color_dict[key] = this_color_dict;
+        this.is_discrete[key] = discrete;
+        this.minimum_values[key] = this.min_val;
+        results.push(this.maximum_values[key] = this.max_val);
+      }
+      return results;
+    };
+
+    Bar_Chart.prototype.get_distinct_attr_vals = function() {
+      var attribute, j, len, ref, results, sample;
+      this.distinct_attr_vals = {};
+      ref = this.sample_attr_vals;
+      results = [];
+      for (j = 0, len = ref.length; j < len; j++) {
+        sample = ref[j];
+        results.push((function() {
+          var ref1, results1;
+          results1 = [];
+          for (attribute in sample) {
+            if (!this.distinct_attr_vals[attribute]) {
+              this.distinct_attr_vals[attribute] = [];
+            }
+            if (ref1 = sample[attribute], indexOf.call(this.distinct_attr_vals[attribute], ref1) < 0) {
+              results1.push(this.distinct_attr_vals[attribute].push(sample[attribute]));
+            } else {
+              results1.push(void 0);
+            }
+          }
+          return results1;
+        }).call(this));
+      }
+      return results;
+    };
+
+    Bar_Chart.prototype.add_legend = function() {
+      if (this.is_discrete[this.attribute_name]) {
+        return this.add_legend_discrete();
+      } else {
+        return this.add_legend_continuous();
+      }
+    };
+
+    Bar_Chart.prototype.remove_legend = function() {
+      $(".legend").remove();
+      return $("#legend-left,#legend-right,#legend-colors").empty();
+    };
+
+    Bar_Chart.prototype.add_legend_continuous = function() {
+      var svg_html;
+      $('#legend-left').html(this.minimum_values[this.attribute_name]);
+      $('#legend-right').html(this.maximum_values[this.attribute_name]);
+      svg_html = '<svg height="15" width="120"> <rect x="0" width="20" height="15" style="fill: rgb(0, 0, 0);"></rect> <rect x="20" width="20" height="15" style="fill: rgb(50, 0, 0);"></rect> <rect x="40" width="20" height="15" style="fill: rgb(100, 0, 0);"></rect> <rect x="60" width="20" height="15" style="fill: rgb(150, 0, 0);"></rect> <rect x="80" width="20" height="15" style="fill: rgb(200, 0, 0);"></rect> <rect x="100" width="20" height="15" style="fill: rgb(255, 0, 0);"></rect> </svg>';
+      console.log("svg_html:", svg_html);
+      return $('#legend-colors').html(svg_html);
+    };
+
+    Bar_Chart.prototype.add_legend_discrete = function() {
+      var legend_span;
+      legend_span = d3.select('#bar_chart_legend').append('div').style('word-wrap', 'break-word').attr('class', 'legend').selectAll('span').data(this.distinct_attr_vals[this.attribute_name]).enter().append('span').style({
+        'word-wrap': 'normal',
+        'display': 'inline-block'
+      });
+      legend_span.append('span').style("background-color", (function(_this) {
+        return function(d) {
+          return _this.attr_color_dict[_this.attribute_name][d];
+        };
+      })(this)).style({
+        'display': 'inline-block',
+        'width': '15px',
+        'height': '15px',
+        'margin': '0px 5px 0px 15px'
+      });
+      return legend_span.append('span').text((function(_this) {
+        return function(d) {
+          return d;
+        };
+      })(this)).style('font-size', '20px');
+    };
+
+    Bar_Chart.prototype.open_trait_selection = function() {
+      return $('#collections_holder').load('/collections/list?color_by_trait #collections_list', (function(_this) {
+        return function() {
+          $.colorbox({
+            inline: true,
+            href: "#collections_holder"
+          });
+          return $('a.collection_name').attr('onClick', 'return false');
+        };
+      })(this));
+    };
+
+    Bar_Chart.prototype.color_by_trait = function(trait_sample_data) {
+      var distinct_values, trimmed_samples;
+      console.log("BXD1:", trait_sample_data["BXD1"]);
+      console.log("trait_sample_data:", trait_sample_data);
+      trimmed_samples = this.trim_values(trait_sample_data);
+      distinct_values = {};
+      distinct_values["collection_trait"] = this.get_distinct_values(trimmed_samples);
+      this.trait_color_dict = this.get_trait_color_dict(trimmed_samples, distinct_values);
+      console.log("TRAIT_COLOR_DICT:", this.trait_color_dict);
+      return this.rebuild_bar_graph();
+      //return console.log("SAMPLES:", this.samples);
+    };
+
+    Bar_Chart.prototype.trim_values = function(trait_sample_data) {
+      var j, len, ref, sample, trimmed_samples;
+      trimmed_samples = {};
+      ref = this.sample_lists['samples_all'];
+      for (j = 0, len = ref.length; j < len; j++) {
+        sample = ref[j]['name'];
+        if (sample in trait_sample_data) {
+          trimmed_samples[sample] = trait_sample_data[sample];
+        }
+      }
+      console.log("trimmed_samples:", trimmed_samples);
+      return trimmed_samples;
+    };
+
+    Bar_Chart.prototype.get_distinct_values = function(samples) {
+      var distinct_values;
+      distinct_values = _.uniq(_.values(samples));
+      console.log("distinct_values:", distinct_values);
+      return distinct_values;
+    };
+
+    Bar_Chart.prototype.get_trait_color_dict = function(samples, vals) {
+      var color, color_range, distinct_vals, i, j, k, key, len, len1, results, sample, this_color_dict, value;
+      trait_color_dict = {};
+      console.log("vals:", vals);
+      for (key in vals) {
+        if (!hasProp.call(vals, key)) continue;
+        distinct_vals = vals[key];
+        this_color_dict = {};
+        this.min_val = d3.min(distinct_vals);
+        this.max_val = d3.max(distinct_vals);
+        if (distinct_vals.length < 10) {
+          color = d3.scale.category10();
+          for (i = j = 0, len = distinct_vals.length; j < len; i = ++j) {
+            value = distinct_vals[i];
+            this_color_dict[value] = color(i);
+          }
+        } else {
+          console.log("distinct_values:", distinct_vals);
+          if (_.every(distinct_vals, (function(_this) {
+            return function(d) {
+              if (isNaN(d)) {
+                return false;
+              } else {
+                return true;
+              }
+            };
+          })(this))) {
+            color_range = d3.scale.linear().domain([d3.min(distinct_vals), d3.max(distinct_vals)]).range([0, 255]);
+            for (i = k = 0, len1 = distinct_vals.length; k < len1; i = ++k) {
+              value = distinct_vals[i];
+              //console.log("color_range(value):", parseInt(color_range(value)));
+              this_color_dict[value] = d3.rgb(parseInt(color_range(value)), 0, 0);
+            }
+          }
+        }
+      }
+      results = [];
+      console.log("SAMPLES:", samples)
+      for (sample in samples) {
+        if (!hasProp.call(samples, sample)) continue;
+        value = samples[sample];
+        trait_color_dict[sample] = this_color_dict[value];
+        //results.push(this.trait_color_dict[sample] = this_color_dict[value]);
+      }
+      return trait_color_dict;
+    };
+
+    return Bar_Chart;
+
+  })();
+
+  root.Bar_Chart = Bar_Chart;
+
+}).call(this);
diff --git a/gn2/wqflask/static/new/javascript/box.js b/gn2/wqflask/static/new/javascript/box.js
new file mode 100644
index 00000000..aae80f05
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/box.js
@@ -0,0 +1,307 @@
+//Taken from http://bl.ocks.org/mbostock/4061502

+

+(function() {

+

+// Inspired by http://informationandvisualization.de/blog/box-plot

+d3.box = function() {

+  var width = 1,

+      height = 1,

+      duration = 0,

+      domain = null,

+      value = Number,

+      whiskers = boxWhiskers,

+      quartiles = boxQuartiles,

+      tickFormat = null;

+

+  // For each small multiple…

+  function box(g) {

+    g.each(function(d, i) {

+      console.log("d:", d)

+      console.log("domain:", domain)

+      d = d.map(value).sort(d3.ascending);

+      var g = d3.select(this),

+          n = d.length,

+          min = d[0],

+          max = d[n - 1];

+

+      // Compute quartiles. Must return exactly 3 elements.

+      var quartileData = d.quartiles = quartiles(d);

+

+      // Compute whiskers. Must return exactly 2 elements, or null.

+      var whiskerIndices = whiskers && whiskers.call(this, d, i),

+          whiskerData = whiskerIndices && whiskerIndices.map(function(i) { return d[i]; });

+

+      // Compute outliers. If no whiskers are specified, all data are "outliers".

+      // We compute the outliers as indices, so that we can join across transitions!

+      var outlierIndices = whiskerIndices

+          ? d3.range(0, whiskerIndices[0]).concat(d3.range(whiskerIndices[1] + 1, n))

+          : d3.range(n);

+

+      // Compute the new x-scale.

+      var x1 = d3.scale.linear()

+          .domain(domain && domain.call(this, d, i) || [min, max])

+          .range([height, 0]);

+

+      // Retrieve the old x-scale, if this is an update.

+      var x0 = this.__chart__ || d3.scale.linear()

+          .domain([0, Infinity])

+          .range(x1.range());

+

+      // Stash the new scale.

+      this.__chart__ = x1;

+

+      // Note: the box, median, and box tick elements are fixed in number,

+      // so we only have to handle enter and update. In contrast, the outliers

+      // and other elements are variable, so we need to exit them! Variable

+      // elements also fade in and out.

+

+      // Update center line: the vertical line spanning the whiskers.

+      var center = g.selectAll("line.center")

+          .data(whiskerData ? [whiskerData] : []);

+

+      center.enter().insert("line", "rect")

+          .attr("class", "center")

+          .attr("x1", width / 2)

+          .attr("y1", function(d) { return x0(d[0]); })

+          .attr("x2", width / 2)

+          .attr("y2", function(d) { return x0(d[1]); })

+          .style("opacity", 1e-6)

+        .transition()

+          .duration(duration)

+          .style("opacity", 1)

+          .attr("y1", function(d) { return x1(d[0]); })

+          .attr("y2", function(d) { return x1(d[1]); });

+

+      center.transition()

+          .duration(duration)

+          .style("opacity", 1)

+          .attr("y1", function(d) { return x1(d[0]); })

+          .attr("y2", function(d) { return x1(d[1]); });

+

+      center.exit().transition()

+          .duration(duration)

+          .style("opacity", 1e-6)

+          .attr("y1", function(d) { return x1(d[0]); })

+          .attr("y2", function(d) { return x1(d[1]); })

+          .remove();

+

+      // Update innerquartile box.

+      var box = g.selectAll("rect.box")

+          .data([quartileData]);

+

+      box.enter().append("rect")

+          .attr("class", "box")

+          .attr("x", 0)

+          .attr("y", function(d) { return x0(d[2]); })

+          .attr("width", width)

+          .attr("height", function(d) { return x0(d[0]) - x0(d[2]); })

+        .transition()

+          .duration(duration)

+          .attr("y", function(d) { return x1(d[2]); })

+          .attr("height", function(d) { return x1(d[0]) - x1(d[2]); });

+

+      box.transition()

+          .duration(duration)

+          .attr("y", function(d) { return x1(d[2]); })

+          .attr("height", function(d) { return x1(d[0]) - x1(d[2]); });

+

+      // Update median line.

+      var medianLine = g.selectAll("line.median")

+          .data([quartileData[1]]);

+

+      medianLine.enter().append("line")

+          .attr("class", "median")

+          .attr("x1", 0)

+          .attr("y1", x0)

+          .attr("x2", width)

+          .attr("y2", x0)

+        .transition()

+          .duration(duration)

+          .attr("y1", x1)

+          .attr("y2", x1);

+

+      medianLine.transition()

+          .duration(duration)

+          .attr("y1", x1)

+          .attr("y2", x1);

+

+      // Update whiskers.

+      var whisker = g.selectAll("line.whisker")

+          .data(whiskerData || []);

+

+      whisker.enter().insert("line", "circle, text")

+          .attr("class", "whisker")

+          .attr("x1", 0)

+          .attr("y1", x0)

+          .attr("x2", width)

+          .attr("y2", x0)

+          .style("opacity", 1e-6)

+        .transition()

+          .duration(duration)

+          .attr("y1", x1)

+          .attr("y2", x1)

+          .style("opacity", 1);

+

+      whisker.transition()

+          .duration(duration)

+          .attr("y1", x1)

+          .attr("y2", x1)

+          .style("opacity", 1);

+

+      whisker.exit().transition()

+          .duration(duration)

+          .attr("y1", x1)

+          .attr("y2", x1)

+          .style("opacity", 1e-6)

+          .remove();

+

+      // Update outliers.

+      var outlier = g.selectAll("circle.outlier")

+          .data(outlierIndices, Number);

+

+      outlier.enter().insert("circle", "text")

+          .attr("class", "outlier")

+          .attr("r", 5)

+          .attr("cx", width / 2)

+          .attr("cy", function(i) { return x0(d[i]); })

+          .style("opacity", 1e-6)

+        .transition()

+          .duration(duration)

+          .attr("cy", function(i) { return x1(d[i]); })

+          .style("opacity", 1);

+

+      outlier.transition()

+          .duration(duration)

+          .attr("cy", function(i) { return x1(d[i]); })

+          .style("opacity", 1);

+

+      outlier.exit().transition()

+          .duration(duration)

+          .attr("cy", function(i) { return x1(d[i]); })

+          .style("opacity", 1e-6)

+          .remove();

+

+      // Compute the tick format.

+      var format = tickFormat || x1.tickFormat(8);

+

+      // Update box ticks.

+      var boxTick = g.selectAll("text.box")

+          .data(quartileData);

+

+      console.log("quartileData:", quartileData);

+          

+      boxTick.enter().append("text")

+          .attr("class", "box")

+          .attr("dy", ".3em")

+          .attr("dx", function(d, i) { return i & 1 ? 6 : -6 })

+          .attr("x", function(d, i) { return i & 1 ? width : 0 })

+          .attr("y", x0)

+          .attr("text-anchor", function(d, i) { return i & 1 ? "start" : "end"; })

+          .text(format)

+        .transition()

+          .duration(duration)

+          .attr("y", x1);

+

+      boxTick.transition()

+          .duration(duration)

+          .text(format)

+          .attr("y", x1);

+

+      // Update whisker ticks. These are handled separately from the box

+      // ticks because they may or may not exist, and we want don't want

+      // to join box ticks pre-transition with whisker ticks post-.

+      var whiskerTick = g.selectAll("text.whisker")

+          .data(whiskerData || []);

+

+      whiskerTick.enter().append("text")

+          .attr("class", "whisker")

+          .attr("dy", ".3em")

+          .attr("dx", 6)

+          .attr("x", width)

+          .attr("y", x0)

+          .text(format)

+          .style("opacity", 1e-6)

+        .transition()

+          .duration(duration)

+          .attr("y", x1)

+          .style("opacity", 1);

+

+      whiskerTick.transition()

+          .duration(duration)

+          .text(format)

+          .attr("y", x1)

+          .style("opacity", 1);

+

+      whiskerTick.exit().transition()

+          .duration(duration)

+          .attr("y", x1)

+          .style("opacity", 1e-6)

+          .remove();

+    });

+    d3.timer.flush();

+  }

+

+  box.width = function(x) {

+    if (!arguments.length) return width;

+    width = x;

+    return box;

+  };

+

+  box.height = function(x) {

+    if (!arguments.length) return height;

+    height = x;

+    return box;

+  };

+

+  box.tickFormat = function(x) {

+    if (!arguments.length) return tickFormat;

+    tickFormat = x;

+    return box;

+  };

+

+  box.duration = function(x) {

+    if (!arguments.length) return duration;

+    duration = x;

+    return box;

+  };

+

+  box.domain = function(x) {

+    if (!arguments.length) return domain;

+    domain = x == null ? x : d3.functor(x);

+    return box;

+  };

+

+  box.value = function(x) {

+    if (!arguments.length) return value;

+    value = x;

+    return box;

+  };

+

+  box.whiskers = function(x) {

+    if (!arguments.length) return whiskers;

+    whiskers = x;

+    return box;

+  };

+

+  box.quartiles = function(x) {

+    if (!arguments.length) return quartiles;

+    quartiles = x;

+    return box;

+  };

+

+  return box;

+};

+

+function boxWhiskers(d) {

+  return [0, d.length - 1];

+}

+

+function boxQuartiles(d) {

+  return [

+    d3.quantile(d, .25),

+    d3.quantile(d, .5),

+    d3.quantile(d, .75)

+  ];

+}

+

+})();
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/box_plot.js b/gn2/wqflask/static/new/javascript/box_plot.js
new file mode 100644
index 00000000..566a8eb8
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/box_plot.js
@@ -0,0 +1,80 @@
+// Generated by CoffeeScript 1.8.0
+var Box_Plot, root;
+
+root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+Box_Plot = (function() {
+  function Box_Plot(sample_list, sample_group) {
+    this.sample_list = sample_list;
+    this.sample_group = sample_group;
+    this.get_samples();
+    this.margin = {
+      top: 10,
+      right: 50,
+      bottom: 20,
+      left: 50
+    };
+    this.plot_width = 200 - this.margin.left - this.margin.right;
+    this.plot_height = 500 - this.margin.top - this.margin.bottom;
+    this.min = d3.min(this.sample_vals);
+    this.max = d3.max(this.sample_vals);
+    this.svg = this.create_svg();
+    this.enter_data();
+  }
+
+  Box_Plot.prototype.get_samples = function() {
+    var sample;
+    return this.sample_vals = (function() {
+      var _i, _len, _ref, _results;
+      _ref = this.sample_list;
+      _results = [];
+      for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+        sample = _ref[_i];
+        if (sample.value !== null) {
+          _results.push(sample.value);
+        }
+      }
+      return _results;
+    }).call(this);
+  };
+
+  Box_Plot.prototype.create_svg = function() {
+    var svg;
+    svg = d3.box().whiskers(this.inter_quartile_range(1.5)).width(this.plot_width - 30).height(this.plot_height - 30).domain([this.min, this.max]);
+    return svg;
+  };
+
+  Box_Plot.prototype.enter_data = function() {
+    return d3.select("#box_plot").selectAll("svg").data([this.sample_vals]).enter().append("svg:svg").attr("class", "box").attr("width", this.plot_width).attr("height", this.plot_height).append("svg:g").call(this.svg);
+  };
+
+  Box_Plot.prototype.inter_quartile_range = function(k) {
+    return (function(_this) {
+      return function(d, i) {
+        var inter_quartile_range, j, q1, q3;
+        console.log("iqr d:", d);
+        q1 = d.quartiles[0];
+        q3 = d.quartiles[2];
+        inter_quartile_range = (q3 - q1) * k;
+        console.log("iqr:", inter_quartile_range);
+        i = 0;
+        j = d.length;
+        console.log("d[-1]:", d[1]);
+        console.log("q1 - iqr:", q1 - inter_quartile_range);
+        while (d[i] < q1 - inter_quartile_range) {
+          i++;
+        }
+        while (d[j] > q3 + inter_quartile_range) {
+          j--;
+        }
+        console.log("[i, j]", [i, j]);
+        return [i, j];
+      };
+    })(this);
+  };
+
+  return Box_Plot;
+
+})();
+
+root.Box_Plot = Box_Plot;
diff --git a/gn2/wqflask/static/new/javascript/chr_lod_chart.js b/gn2/wqflask/static/new/javascript/chr_lod_chart.js
new file mode 100644
index 00000000..c6cbd01b
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/chr_lod_chart.js
@@ -0,0 +1,297 @@
+// Generated by CoffeeScript 1.9.2
+var Chr_Lod_Chart;
+
+Chr_Lod_Chart = (function() {
+  function Chr_Lod_Chart(plot_height, plot_width, chr, manhattanPlot, mappingScale) {
+    this.plot_height = plot_height;
+    this.plot_width = plot_width;
+    this.chr = chr;
+    this.manhattanPlot = manhattanPlot;
+    this.mappingScale = mappingScale;
+    this.qtl_results = js_data.qtl_results;
+    console.log("qtl_results are:", this.qtl_results);
+    console.log("chr is:", this.chr);
+    this.get_max_chr();
+    this.filter_qtl_results();
+    console.log("filtered results:", this.these_results);
+    this.get_qtl_count();
+    this.x_coords = [];
+    this.y_coords = [];
+    this.marker_names = [];
+    console.time('Create coordinates');
+    this.create_coordinates();
+    console.log("@x_coords: ", this.x_coords);
+    console.log("@y_coords: ", this.y_coords);
+    console.timeEnd('Create coordinates');
+    this.x_buffer = this.plot_width / 30;
+    this.y_buffer = this.plot_height / 20;
+    this.x_max = d3.max(this.x_coords);
+    this.y_max = d3.max(this.y_coords) * 1.2;
+    this.y_threshold = this.get_lod_threshold();
+    this.svg = this.create_svg();
+    this.plot_coordinates = _.zip(this.x_coords, this.y_coords, this.marker_names);
+    console.log("coordinates:", this.plot_coordinates);
+    this.plot_height -= this.y_buffer;
+    this.create_scales();
+    console.time('Create graph');
+    this.create_graph();
+    console.timeEnd('Create graph');
+  }
+
+  Chr_Lod_Chart.prototype.get_max_chr = function() {
+    var key, results;
+    this.max_chr = 0;
+    results = [];
+    for (key in js_data.chromosomes) {
+      console.log("key is:", key);
+      if (parseInt(key) > this.max_chr) {
+        results.push(this.max_chr = parseInt(key));
+      } else {
+        results.push(void 0);
+      }
+    }
+    return results;
+  };
+
+  Chr_Lod_Chart.prototype.filter_qtl_results = function() {
+    var i, len, ref, result, results, this_chr;
+    this.these_results = [];
+    this_chr = 100;
+    ref = this.qtl_results;
+    results = [];
+    for (i = 0, len = ref.length; i < len; i++) {
+      result = ref[i];
+      if (result.chr === "X") {
+        this_chr = this.max_chr;
+      } else {
+        this_chr = result.chr;
+      }
+      if (this_chr > parseInt(this.chr[0])) {
+        break;
+      }
+      if (parseInt(this_chr) === parseInt(this.chr[0])) {
+        results.push(this.these_results.push(result));
+      } else {
+        results.push(void 0);
+      }
+    }
+    return results;
+  };
+
+  Chr_Lod_Chart.prototype.get_qtl_count = function() {
+    var high_qtl_count, i, len, ref, result;
+    high_qtl_count = 0;
+    ref = this.these_results;
+    for (i = 0, len = ref.length; i < len; i++) {
+      result = ref[i];
+      if (result.lod_score > 1) {
+        high_qtl_count += 1;
+      }
+    }
+    console.log("high_qtl_count:", high_qtl_count);
+    return this.y_axis_filter = 2;
+  };
+
+  Chr_Lod_Chart.prototype.create_coordinates = function() {
+    var i, len, ref, result, results;
+    ref = this.these_results;
+    console.log("THESE_RESULTS:", ref)
+    results = [];
+    for (i = 0, len = ref.length; i < len; i++) {
+      result = ref[i];
+      this.x_coords.push(parseFloat(result.Mb));
+      if (js_data.result_score_type == "LOD") {
+        this.y_coords.push(result.lod_score);
+      }
+      else {
+        console.log("LRS VALUE:", result['lrs_value'])
+        this.y_coords.push(result['lrs_value']);
+      }
+      results.push(this.marker_names.push(result.name));
+    }
+    return results;
+  };
+
+  Chr_Lod_Chart.prototype.create_svg = function() {
+    var svg;
+    svg = d3.select("#topchart").append("svg").attr("class", "chr_manhattan_plot").attr("width", this.plot_width + this.x_buffer).attr("height", this.plot_height + this.y_buffer).append("g");
+    return svg;
+  };
+
+  Chr_Lod_Chart.prototype.create_scales = function() {
+    if (this.mappingScale == "morgan") {
+        max_pos = 0
+        for (i = 0, len = this.these_results.length; i < len; i++) {
+           marker = this.these_results[i]
+           if (parseFloat(marker['Mb']) > max_pos){
+               max_pos = parseFloat(marker.Mb)
+           }
+        }
+        this.x_scale = d3.scale.linear().domain([0, max_pos]).range([this.x_buffer, this.plot_width]);
+    }
+    else {
+        this.x_scale = d3.scale.linear().domain([0, this.chr[1]]).range([this.x_buffer, this.plot_width]);
+    }
+    return this.y_scale = d3.scale.linear().domain([0, this.y_max]).range([this.plot_height, this.y_buffer]);
+  };
+
+  Chr_Lod_Chart.prototype.get_lod_threshold = function() {
+    if (this.y_max / 2 > 2) {
+      return this.y_max / 2;
+    } else {
+      return 2;
+    }
+  };
+
+  Chr_Lod_Chart.prototype.create_graph = function() {
+    this.add_border();
+    this.add_x_axis();
+    this.add_y_axis();
+    this.add_title();
+    this.add_back_button();
+    if (this.manhattanPlot) {
+      return this.add_plot_points();
+    } else {
+      return this.add_path();
+    }
+  };
+
+  Chr_Lod_Chart.prototype.add_border = function() {
+    var border_coords;
+    border_coords = [[this.y_buffer, this.plot_height, this.x_buffer, this.x_buffer], [this.y_buffer, this.plot_height, this.plot_width, this.plot_width], [this.y_buffer, this.y_buffer, this.x_buffer, this.plot_width], [this.plot_height, this.plot_height, this.x_buffer, this.plot_width]];
+    return this.svg.selectAll("line").data(border_coords).enter().append("line").attr("y1", (function(_this) {
+      return function(d) {
+        return d[0];
+      };
+    })(this)).attr("y2", (function(_this) {
+      return function(d) {
+        return d[1];
+      };
+    })(this)).attr("x1", (function(_this) {
+      return function(d) {
+        return d[2];
+      };
+    })(this)).attr("x2", (function(_this) {
+      return function(d) {
+        return d[3];
+      };
+    })(this)).style("stroke", "#000");
+  };
+
+  Chr_Lod_Chart.prototype.add_x_axis = function() {
+    this.xAxis = d3.svg.axis().scale(this.x_scale).orient("bottom").ticks(20);
+    this.xAxis.tickFormat((function(_this) {
+      return function(d) {
+        d3.format("d");
+        return d;
+      };
+    })(this));
+    return this.svg.append("g").attr("class", "x_axis").attr("transform", "translate(0," + this.plot_height + ")").call(this.xAxis).selectAll("text").attr("text-anchor", "right").attr("font-size", "12px").attr("dx", "-1.6em").attr("transform", (function(_this) {
+      return function(d) {
+        return "translate(-12,0) rotate(-90)";
+      };
+    })(this));
+  };
+
+  Chr_Lod_Chart.prototype.add_y_axis = function() {
+    this.yAxis = d3.svg.axis().scale(this.y_scale).orient("left").ticks(5);
+    return this.svg.append("g").attr("class", "y_axis").attr("transform", "translate(" + this.x_buffer + ",0)").call(this.yAxis);
+  };
+
+  Chr_Lod_Chart.prototype.add_title = function() {
+    return this.svg.append("text").attr("class", "title").text("Chr " + this.chr[0]).attr("x", (function(_this) {
+      return function(d) {
+        return (_this.plot_width + _this.x_buffer) / 2;
+      };
+    })(this)).attr("y", this.y_buffer + 20).attr("dx", "0em").attr("text-anchor", "middle").attr("font-family", "sans-serif").attr("font-size", "18px").attr("fill", "black");
+  };
+
+  Chr_Lod_Chart.prototype.add_back_button = function() {
+    return $("#return_to_full_view").show().click((function(_this) {
+      return function() {
+        return _this.return_to_full_view();
+      };
+    })(this));
+  };
+
+  Chr_Lod_Chart.prototype.add_path = function() {
+    var line_function, line_graph;
+    line_function = d3.svg.line().x((function(_this) {
+      return function(d) {
+        return _this.x_scale(d[0]);
+      };
+    })(this)).y((function(_this) {
+      return function(d) {
+        return _this.y_scale(d[1]);
+      };
+    })(this)).interpolate("linear");
+    return line_graph = this.svg.append("path").attr("d", line_function(this.plot_coordinates)).attr("stroke", "blue").attr("stroke-width", 1).attr("fill", "none");
+  };
+
+  Chr_Lod_Chart.prototype.add_plot_points = function() {
+    return this.plot_point = this.svg.selectAll("circle").data(this.plot_coordinates).enter().append("circle").attr("cx", (function(_this) {
+      return function(d) {
+        return _this.x_scale(d[0]);
+      };
+    })(this)).attr("cy", (function(_this) {
+      return function(d) {
+        return _this.y_scale(d[1]);
+      };
+    })(this)).attr("r", (function(_this) {
+      return function(d) {
+        return 2;
+      };
+    })(this)).attr("fill", (function(_this) {
+      return function(d) {
+        return "black";
+      };
+    })(this)).attr("stroke", "black").attr("stroke-width", "1").attr("id", (function(_this) {
+      return function(d) {
+        return "point_" + String(d[2]);
+      };
+    })(this)).classed("circle", true).on("mouseover", (function(_this) {
+      return function(d) {
+        var this_id;
+        console.log("d3.event is:", d3.event);
+        console.log("d is:", d);
+        this_id = "point_" + String(d[2]);
+        return d3.select("#" + this_id).classed("d3_highlight", true).attr("r", 5).attr("stroke", "none").attr("fill", "blue").call(_this.show_marker_in_table(d));
+      };
+    })(this)).on("mouseout", (function(_this) {
+      return function(d) {
+        var this_id;
+        this_id = "point_" + String(d[2]);
+        return d3.select("#" + this_id).classed("d3_highlight", false).attr("r", function(d) {
+          return 2;
+        }).attr("fill", function(d) {
+          return "black";
+        }).attr("stroke", "black").attr("stroke-width", "1");
+      };
+    })(this)).append("svg:title").text((function(_this) {
+      return function(d) {
+        return d[2];
+      };
+    })(this));
+  };
+
+  Chr_Lod_Chart.prototype.return_to_full_view = function() {
+    $("#return_to_full_view").hide();
+    $('#topchart').remove();
+    $('#chart_container').append('<div class="qtlcharts" id="topchart"></div>');
+    return create_lod_chart();
+  };
+
+  Chr_Lod_Chart.prototype.show_marker_in_table = function(marker_info) {
+    var marker_name;
+    console.log("in show_marker_in_table");
+
+    /* Searches for the select marker in the results table below */
+    if (marker_info) {
+      marker_name = marker_info[2];
+      return $("#qtl_results_filter").find("input:first").val(marker_name).change();
+    }
+  };
+
+  return Chr_Lod_Chart;
+
+})();
diff --git a/gn2/wqflask/static/new/javascript/chr_manhattan_plot.js b/gn2/wqflask/static/new/javascript/chr_manhattan_plot.js
new file mode 100644
index 00000000..c661edc7
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/chr_manhattan_plot.js
@@ -0,0 +1,273 @@
+// Generated by CoffeeScript 1.8.0
+var Chr_Manhattan_Plot;
+
+Chr_Manhattan_Plot = (function() {
+  function Chr_Manhattan_Plot(plot_height, plot_width, chr, manhattanPlot) {
+    this.plot_height = plot_height;
+    this.plot_width = plot_width;
+    this.chr = chr;
+    this.qtl_results = js_data.qtl_results;
+    console.log("qtl_results are:", this.qtl_results);
+    console.log("chr is:", this.chr);
+    this.get_max_chr();
+    this.filter_qtl_results();
+    console.log("filtered results:", this.these_results);
+    this.get_qtl_count();
+    this.x_coords = [];
+    this.y_coords = [];
+    this.marker_names = [];
+    console.time('Create coordinates');
+    this.create_coordinates();
+    console.log("@x_coords: ", this.x_coords);
+    console.log("@y_coords: ", this.y_coords);
+    console.timeEnd('Create coordinates');
+    this.x_buffer = this.plot_width / 30;
+    this.y_buffer = this.plot_height / 20;
+    this.x_max = d3.max(this.x_coords);
+    this.y_max = d3.max(this.y_coords) * 1.2;
+    this.y_threshold = this.get_lod_threshold();
+    this.svg = this.create_svg();
+    this.plot_coordinates = _.zip(this.x_coords, this.y_coords, this.marker_names);
+    console.log("coordinates:", this.plot_coordinates);
+    this.plot_height -= this.y_buffer;
+    this.create_scales();
+    console.time('Create graph');
+    this.create_graph();
+    console.timeEnd('Create graph');
+  }
+
+  Chr_Manhattan_Plot.prototype.get_max_chr = function() {
+    var key, _results;
+    this.max_chr = 0;
+    _results = [];
+    for (key in js_data.chromosomes) {
+      console.log("key is:", key);
+      if (parseInt(key) > this.max_chr) {
+        _results.push(this.max_chr = parseInt(key));
+      } else {
+        _results.push(void 0);
+      }
+    }
+    return _results;
+  };
+
+  Chr_Manhattan_Plot.prototype.filter_qtl_results = function() {
+    var result, this_chr, _i, _len, _ref, _results;
+    this.these_results = [];
+    this_chr = 100;
+    _ref = this.qtl_results;
+    _results = [];
+    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+      result = _ref[_i];
+      if (result.chr === "X") {
+        this_chr = this.max_chr;
+      } else {
+        this_chr = result.chr;
+      }
+      console.log("this_chr is:", this_chr);
+      console.log("@chr[0] is:", parseInt(this.chr[0]));
+      if (this_chr > parseInt(this.chr[0])) {
+        break;
+      }
+      if (parseInt(this_chr) === parseInt(this.chr[0])) {
+        _results.push(this.these_results.push(result));
+      } else {
+        _results.push(void 0);
+      }
+    }
+    return _results;
+  };
+
+  Chr_Manhattan_Plot.prototype.get_qtl_count = function() {
+    var high_qtl_count, result, _i, _len, _ref;
+    high_qtl_count = 0;
+    _ref = this.these_results;
+    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+      result = _ref[_i];
+      if (result.lod_score > 1) {
+        high_qtl_count += 1;
+      }
+    }
+    console.log("high_qtl_count:", high_qtl_count);
+    return this.y_axis_filter = 2;
+  };
+
+  Chr_Manhattan_Plot.prototype.create_coordinates = function() {
+    var result, _i, _len, _ref, _results;
+    _ref = this.these_results;
+    _results = [];
+    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+      result = _ref[_i];
+      this.x_coords.push(parseFloat(result.Mb));
+      this.y_coords.push(result.lod_score);
+      _results.push(this.marker_names.push(result.name));
+    }
+    return _results;
+  };
+
+  Chr_Manhattan_Plot.prototype.create_svg = function() {
+    var svg;
+    svg = d3.select("#topchart").append("svg").attr("class", "chr_manhattan_plot").attr("width", this.plot_width + this.x_buffer).attr("height", this.plot_height + this.y_buffer).append("g");
+    return svg;
+  };
+
+  Chr_Manhattan_Plot.prototype.create_scales = function() {
+    this.x_scale = d3.scale.linear().domain([0, this.chr[1]]).range([this.x_buffer, this.plot_width]);
+    return this.y_scale = d3.scale.linear().domain([0, this.y_max]).range([this.plot_height, this.y_buffer]);
+  };
+
+  Chr_Manhattan_Plot.prototype.get_lod_threshold = function() {
+    if (this.y_max / 2 > 2) {
+      return this.y_max / 2;
+    } else {
+      return 2;
+    }
+  };
+
+  Chr_Manhattan_Plot.prototype.create_graph = function() {
+    this.add_border();
+    this.add_x_axis();
+    this.add_y_axis();
+    this.add_title();
+    this.add_back_button();
+    if (manhattanPlot) {
+      return this.add_plot_points();
+    } else {
+      return this.add_path();
+    }
+  };
+
+  Chr_Manhattan_Plot.prototype.add_border = function() {
+    var border_coords;
+    border_coords = [[this.y_buffer, this.plot_height, this.x_buffer, this.x_buffer], [this.y_buffer, this.plot_height, this.plot_width, this.plot_width], [this.y_buffer, this.y_buffer, this.x_buffer, this.plot_width], [this.plot_height, this.plot_height, this.x_buffer, this.plot_width]];
+    return this.svg.selectAll("line").data(border_coords).enter().append("line").attr("y1", (function(_this) {
+      return function(d) {
+        return d[0];
+      };
+    })(this)).attr("y2", (function(_this) {
+      return function(d) {
+        return d[1];
+      };
+    })(this)).attr("x1", (function(_this) {
+      return function(d) {
+        return d[2];
+      };
+    })(this)).attr("x2", (function(_this) {
+      return function(d) {
+        return d[3];
+      };
+    })(this)).style("stroke", "#000");
+  };
+
+  Chr_Manhattan_Plot.prototype.add_x_axis = function() {
+    this.xAxis = d3.svg.axis().scale(this.x_scale).orient("bottom").ticks(20);
+    this.xAxis.tickFormat((function(_this) {
+      return function(d) {
+        d3.format("d");
+        return d;
+      };
+    })(this));
+    return this.svg.append("g").attr("class", "x_axis").attr("transform", "translate(0," + this.plot_height + ")").call(this.xAxis).selectAll("text").attr("text-anchor", "right").attr("font-size", "12px").attr("dx", "-1.6em").attr("transform", (function(_this) {
+      return function(d) {
+        return "translate(-12,0) rotate(-90)";
+      };
+    })(this));
+  };
+
+  Chr_Manhattan_Plot.prototype.add_y_axis = function() {
+    this.yAxis = d3.svg.axis().scale(this.y_scale).orient("left").ticks(5);
+    return this.svg.append("g").attr("class", "y_axis").attr("transform", "translate(" + this.x_buffer + ",0)").call(this.yAxis);
+  };
+
+  Chr_Manhattan_Plot.prototype.add_title = function() {
+    return this.svg.append("text").attr("class", "title").text("Chr " + this.chr[0]).attr("x", (function(_this) {
+      return function(d) {
+        return (_this.plot_width + _this.x_buffer) / 2;
+      };
+    })(this)).attr("y", this.y_buffer + 20).attr("dx", "0em").attr("text-anchor", "middle").attr("font-family", "sans-serif").attr("font-size", "18px").attr("fill", "black");
+  };
+
+  Chr_Manhattan_Plot.prototype.add_back_button = function() {
+    return this.svg.append("text").attr("class", "back").text("Return to full view").attr("x", this.x_buffer * 2).attr("y", this.y_buffer / 2).attr("dx", "0em").attr("text-anchor", "middle").attr("font-family", "sans-serif").attr("font-size", "18px").attr("cursor", "pointer").attr("fill", "black").on("click", this.return_to_full_view);
+  };
+
+  Chr_Manhattan_Plot.prototype.add_path = function() {
+    var line_function, line_graph;
+    line_function = d3.svg.line().x((function(_this) {
+      return function(d) {
+        return _this.x_scale(d[0]);
+      };
+    })(this)).y((function(_this) {
+      return function(d) {
+        return _this.y_scale(d[1]);
+      };
+    })(this)).interpolate("linear");
+    return line_graph = this.svg.append("path").attr("d", line_function(this.plot_coordinates)).attr("stroke", "blue").attr("stroke-width", 1).attr("fill", "none");
+  };
+
+  Chr_Manhattan_Plot.prototype.add_plot_points = function() {
+    return this.plot_point = this.svg.selectAll("circle").data(this.plot_coordinates).enter().append("circle").attr("cx", (function(_this) {
+      return function(d) {
+        return _this.x_scale(d[0]);
+      };
+    })(this)).attr("cy", (function(_this) {
+      return function(d) {
+        return _this.y_scale(d[1]);
+      };
+    })(this)).attr("r", (function(_this) {
+      return function(d) {
+        return 2;
+      };
+    })(this)).attr("fill", (function(_this) {
+      return function(d) {
+        return "black";
+      };
+    })(this)).attr("stroke", "black").attr("stroke-width", "1").attr("id", (function(_this) {
+      return function(d) {
+        return "point_" + String(d[2]);
+      };
+    })(this)).classed("circle", true).on("mouseover", (function(_this) {
+      return function(d) {
+        var this_id;
+        console.log("d3.event is:", d3.event);
+        console.log("d is:", d);
+        this_id = "point_" + String(d[2]);
+        return d3.select("#" + this_id).classed("d3_highlight", true).attr("r", 5).attr("stroke", "none").attr("fill", "blue").call(_this.show_marker_in_table(d));
+      };
+    })(this)).on("mouseout", (function(_this) {
+      return function(d) {
+        var this_id;
+        this_id = "point_" + String(d[2]);
+        return d3.select("#" + this_id).classed("d3_highlight", false).attr("r", function(d) {
+          return 2;
+        }).attr("fill", function(d) {
+          return "black";
+        }).attr("stroke", "black").attr("stroke-width", "1");
+      };
+    })(this)).append("svg:title").text((function(_this) {
+      return function(d) {
+        return d[2];
+      };
+    })(this));
+  };
+
+  Chr_Manhattan_Plot.prototype.return_to_full_view = function() {
+    $('#topchart').remove();
+    $('#chart_container').append('<div class="qtlcharts" id="topchart"></div>');
+    return create_manhattan_plot();
+  };
+
+  Chr_Manhattan_Plot.prototype.show_marker_in_table = function(marker_info) {
+    var marker_name;
+    console.log("in show_marker_in_table");
+
+    /* Searches for the select marker in the results table below */
+    if (marker_info) {
+      marker_name = marker_info[2];
+      return $("#qtl_results_filter").find("input:first").val(marker_name).change();
+    }
+  };
+
+  return Chr_Manhattan_Plot;
+
+})();
diff --git a/gn2/wqflask/static/new/javascript/colorbrewer.js b/gn2/wqflask/static/new/javascript/colorbrewer.js
new file mode 100644
index 00000000..2efa9632
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/colorbrewer.js
@@ -0,0 +1,302 @@
+// This product includes color specifications and designs developed by Cynthia Brewer (http://colorbrewer.org/).

+var colorbrewer = {YlGn: {

+3: ["#f7fcb9","#addd8e","#31a354"],

+4: ["#ffffcc","#c2e699","#78c679","#238443"],

+5: ["#ffffcc","#c2e699","#78c679","#31a354","#006837"],

+6: ["#ffffcc","#d9f0a3","#addd8e","#78c679","#31a354","#006837"],

+7: ["#ffffcc","#d9f0a3","#addd8e","#78c679","#41ab5d","#238443","#005a32"],

+8: ["#ffffe5","#f7fcb9","#d9f0a3","#addd8e","#78c679","#41ab5d","#238443","#005a32"],

+9: ["#ffffe5","#f7fcb9","#d9f0a3","#addd8e","#78c679","#41ab5d","#238443","#006837","#004529"]

+},YlGnBu: {

+3: ["#edf8b1","#7fcdbb","#2c7fb8"],

+4: ["#ffffcc","#a1dab4","#41b6c4","#225ea8"],

+5: ["#ffffcc","#a1dab4","#41b6c4","#2c7fb8","#253494"],

+6: ["#ffffcc","#c7e9b4","#7fcdbb","#41b6c4","#2c7fb8","#253494"],

+7: ["#ffffcc","#c7e9b4","#7fcdbb","#41b6c4","#1d91c0","#225ea8","#0c2c84"],

+8: ["#ffffd9","#edf8b1","#c7e9b4","#7fcdbb","#41b6c4","#1d91c0","#225ea8","#0c2c84"],

+9: ["#ffffd9","#edf8b1","#c7e9b4","#7fcdbb","#41b6c4","#1d91c0","#225ea8","#253494","#081d58"]

+},GnBu: {

+3: ["#e0f3db","#a8ddb5","#43a2ca"],

+4: ["#f0f9e8","#bae4bc","#7bccc4","#2b8cbe"],

+5: ["#f0f9e8","#bae4bc","#7bccc4","#43a2ca","#0868ac"],

+6: ["#f0f9e8","#ccebc5","#a8ddb5","#7bccc4","#43a2ca","#0868ac"],

+7: ["#f0f9e8","#ccebc5","#a8ddb5","#7bccc4","#4eb3d3","#2b8cbe","#08589e"],

+8: ["#f7fcf0","#e0f3db","#ccebc5","#a8ddb5","#7bccc4","#4eb3d3","#2b8cbe","#08589e"],

+9: ["#f7fcf0","#e0f3db","#ccebc5","#a8ddb5","#7bccc4","#4eb3d3","#2b8cbe","#0868ac","#084081"]

+},BuGn: {

+3: ["#e5f5f9","#99d8c9","#2ca25f"],

+4: ["#edf8fb","#b2e2e2","#66c2a4","#238b45"],

+5: ["#edf8fb","#b2e2e2","#66c2a4","#2ca25f","#006d2c"],

+6: ["#edf8fb","#ccece6","#99d8c9","#66c2a4","#2ca25f","#006d2c"],

+7: ["#edf8fb","#ccece6","#99d8c9","#66c2a4","#41ae76","#238b45","#005824"],

+8: ["#f7fcfd","#e5f5f9","#ccece6","#99d8c9","#66c2a4","#41ae76","#238b45","#005824"],

+9: ["#f7fcfd","#e5f5f9","#ccece6","#99d8c9","#66c2a4","#41ae76","#238b45","#006d2c","#00441b"]

+},PuBuGn: {

+3: ["#ece2f0","#a6bddb","#1c9099"],

+4: ["#f6eff7","#bdc9e1","#67a9cf","#02818a"],

+5: ["#f6eff7","#bdc9e1","#67a9cf","#1c9099","#016c59"],

+6: ["#f6eff7","#d0d1e6","#a6bddb","#67a9cf","#1c9099","#016c59"],

+7: ["#f6eff7","#d0d1e6","#a6bddb","#67a9cf","#3690c0","#02818a","#016450"],

+8: ["#fff7fb","#ece2f0","#d0d1e6","#a6bddb","#67a9cf","#3690c0","#02818a","#016450"],

+9: ["#fff7fb","#ece2f0","#d0d1e6","#a6bddb","#67a9cf","#3690c0","#02818a","#016c59","#014636"]

+},PuBu: {

+3: ["#ece7f2","#a6bddb","#2b8cbe"],

+4: ["#f1eef6","#bdc9e1","#74a9cf","#0570b0"],

+5: ["#f1eef6","#bdc9e1","#74a9cf","#2b8cbe","#045a8d"],

+6: ["#f1eef6","#d0d1e6","#a6bddb","#74a9cf","#2b8cbe","#045a8d"],

+7: ["#f1eef6","#d0d1e6","#a6bddb","#74a9cf","#3690c0","#0570b0","#034e7b"],

+8: ["#fff7fb","#ece7f2","#d0d1e6","#a6bddb","#74a9cf","#3690c0","#0570b0","#034e7b"],

+9: ["#fff7fb","#ece7f2","#d0d1e6","#a6bddb","#74a9cf","#3690c0","#0570b0","#045a8d","#023858"]

+},BuPu: {

+3: ["#e0ecf4","#9ebcda","#8856a7"],

+4: ["#edf8fb","#b3cde3","#8c96c6","#88419d"],

+5: ["#edf8fb","#b3cde3","#8c96c6","#8856a7","#810f7c"],

+6: ["#edf8fb","#bfd3e6","#9ebcda","#8c96c6","#8856a7","#810f7c"],

+7: ["#edf8fb","#bfd3e6","#9ebcda","#8c96c6","#8c6bb1","#88419d","#6e016b"],

+8: ["#f7fcfd","#e0ecf4","#bfd3e6","#9ebcda","#8c96c6","#8c6bb1","#88419d","#6e016b"],

+9: ["#f7fcfd","#e0ecf4","#bfd3e6","#9ebcda","#8c96c6","#8c6bb1","#88419d","#810f7c","#4d004b"]

+},RdPu: {

+3: ["#fde0dd","#fa9fb5","#c51b8a"],

+4: ["#feebe2","#fbb4b9","#f768a1","#ae017e"],

+5: ["#feebe2","#fbb4b9","#f768a1","#c51b8a","#7a0177"],

+6: ["#feebe2","#fcc5c0","#fa9fb5","#f768a1","#c51b8a","#7a0177"],

+7: ["#feebe2","#fcc5c0","#fa9fb5","#f768a1","#dd3497","#ae017e","#7a0177"],

+8: ["#fff7f3","#fde0dd","#fcc5c0","#fa9fb5","#f768a1","#dd3497","#ae017e","#7a0177"],

+9: ["#fff7f3","#fde0dd","#fcc5c0","#fa9fb5","#f768a1","#dd3497","#ae017e","#7a0177","#49006a"]

+},PuRd: {

+3: ["#e7e1ef","#c994c7","#dd1c77"],

+4: ["#f1eef6","#d7b5d8","#df65b0","#ce1256"],

+5: ["#f1eef6","#d7b5d8","#df65b0","#dd1c77","#980043"],

+6: ["#f1eef6","#d4b9da","#c994c7","#df65b0","#dd1c77","#980043"],

+7: ["#f1eef6","#d4b9da","#c994c7","#df65b0","#e7298a","#ce1256","#91003f"],

+8: ["#f7f4f9","#e7e1ef","#d4b9da","#c994c7","#df65b0","#e7298a","#ce1256","#91003f"],

+9: ["#f7f4f9","#e7e1ef","#d4b9da","#c994c7","#df65b0","#e7298a","#ce1256","#980043","#67001f"]

+},OrRd: {

+3: ["#fee8c8","#fdbb84","#e34a33"],

+4: ["#fef0d9","#fdcc8a","#fc8d59","#d7301f"],

+5: ["#fef0d9","#fdcc8a","#fc8d59","#e34a33","#b30000"],

+6: ["#fef0d9","#fdd49e","#fdbb84","#fc8d59","#e34a33","#b30000"],

+7: ["#fef0d9","#fdd49e","#fdbb84","#fc8d59","#ef6548","#d7301f","#990000"],

+8: ["#fff7ec","#fee8c8","#fdd49e","#fdbb84","#fc8d59","#ef6548","#d7301f","#990000"],

+9: ["#fff7ec","#fee8c8","#fdd49e","#fdbb84","#fc8d59","#ef6548","#d7301f","#b30000","#7f0000"]

+},YlOrRd: {

+3: ["#ffeda0","#feb24c","#f03b20"],

+4: ["#ffffb2","#fecc5c","#fd8d3c","#e31a1c"],

+5: ["#ffffb2","#fecc5c","#fd8d3c","#f03b20","#bd0026"],

+6: ["#ffffb2","#fed976","#feb24c","#fd8d3c","#f03b20","#bd0026"],

+7: ["#ffffb2","#fed976","#feb24c","#fd8d3c","#fc4e2a","#e31a1c","#b10026"],

+8: ["#ffffcc","#ffeda0","#fed976","#feb24c","#fd8d3c","#fc4e2a","#e31a1c","#b10026"],

+9: ["#ffffcc","#ffeda0","#fed976","#feb24c","#fd8d3c","#fc4e2a","#e31a1c","#bd0026","#800026"]

+},YlOrBr: {

+3: ["#fff7bc","#fec44f","#d95f0e"],

+4: ["#ffffd4","#fed98e","#fe9929","#cc4c02"],

+5: ["#ffffd4","#fed98e","#fe9929","#d95f0e","#993404"],

+6: ["#ffffd4","#fee391","#fec44f","#fe9929","#d95f0e","#993404"],

+7: ["#ffffd4","#fee391","#fec44f","#fe9929","#ec7014","#cc4c02","#8c2d04"],

+8: ["#ffffe5","#fff7bc","#fee391","#fec44f","#fe9929","#ec7014","#cc4c02","#8c2d04"],

+9: ["#ffffe5","#fff7bc","#fee391","#fec44f","#fe9929","#ec7014","#cc4c02","#993404","#662506"]

+},Purples: {

+3: ["#efedf5","#bcbddc","#756bb1"],

+4: ["#f2f0f7","#cbc9e2","#9e9ac8","#6a51a3"],

+5: ["#f2f0f7","#cbc9e2","#9e9ac8","#756bb1","#54278f"],

+6: ["#f2f0f7","#dadaeb","#bcbddc","#9e9ac8","#756bb1","#54278f"],

+7: ["#f2f0f7","#dadaeb","#bcbddc","#9e9ac8","#807dba","#6a51a3","#4a1486"],

+8: ["#fcfbfd","#efedf5","#dadaeb","#bcbddc","#9e9ac8","#807dba","#6a51a3","#4a1486"],

+9: ["#fcfbfd","#efedf5","#dadaeb","#bcbddc","#9e9ac8","#807dba","#6a51a3","#54278f","#3f007d"]

+},Blues: {

+3: ["#deebf7","#9ecae1","#3182bd"],

+4: ["#eff3ff","#bdd7e7","#6baed6","#2171b5"],

+5: ["#eff3ff","#bdd7e7","#6baed6","#3182bd","#08519c"],

+6: ["#eff3ff","#c6dbef","#9ecae1","#6baed6","#3182bd","#08519c"],

+7: ["#eff3ff","#c6dbef","#9ecae1","#6baed6","#4292c6","#2171b5","#084594"],

+8: ["#f7fbff","#deebf7","#c6dbef","#9ecae1","#6baed6","#4292c6","#2171b5","#084594"],

+9: ["#f7fbff","#deebf7","#c6dbef","#9ecae1","#6baed6","#4292c6","#2171b5","#08519c","#08306b"]

+},Greens: {

+3: ["#e5f5e0","#a1d99b","#31a354"],

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+},Spectral: {

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+},RdYlGn: {

+3: ["#fc8d59","#ffffbf","#91cf60"],

+4: ["#d7191c","#fdae61","#a6d96a","#1a9641"],

+5: ["#d7191c","#fdae61","#ffffbf","#a6d96a","#1a9641"],

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+},Accent: {

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+},Dark2: {

+3: ["#1b9e77","#d95f02","#7570b3"],

+4: ["#1b9e77","#d95f02","#7570b3","#e7298a"],

+5: ["#1b9e77","#d95f02","#7570b3","#e7298a","#66a61e"],

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+},Paired: {

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+},Pastel1: {

+3: ["#fbb4ae","#b3cde3","#ccebc5"],

+4: ["#fbb4ae","#b3cde3","#ccebc5","#decbe4"],

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+},Pastel2: {

+3: ["#b3e2cd","#fdcdac","#cbd5e8"],

+4: ["#b3e2cd","#fdcdac","#cbd5e8","#f4cae4"],

+5: ["#b3e2cd","#fdcdac","#cbd5e8","#f4cae4","#e6f5c9"],

+6: ["#b3e2cd","#fdcdac","#cbd5e8","#f4cae4","#e6f5c9","#fff2ae"],

+7: ["#b3e2cd","#fdcdac","#cbd5e8","#f4cae4","#e6f5c9","#fff2ae","#f1e2cc"],

+8: ["#b3e2cd","#fdcdac","#cbd5e8","#f4cae4","#e6f5c9","#fff2ae","#f1e2cc","#cccccc"]

+},Set1: {

+3: ["#e41a1c","#377eb8","#4daf4a"],

+4: ["#e41a1c","#377eb8","#4daf4a","#984ea3"],

+5: ["#e41a1c","#377eb8","#4daf4a","#984ea3","#ff7f00"],

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+7: ["#e41a1c","#377eb8","#4daf4a","#984ea3","#ff7f00","#ffff33","#a65628"],

+8: ["#e41a1c","#377eb8","#4daf4a","#984ea3","#ff7f00","#ffff33","#a65628","#f781bf"],

+9: ["#e41a1c","#377eb8","#4daf4a","#984ea3","#ff7f00","#ffff33","#a65628","#f781bf","#999999"]

+},Set2: {

+3: ["#66c2a5","#fc8d62","#8da0cb"],

+4: ["#66c2a5","#fc8d62","#8da0cb","#e78ac3"],

+5: ["#66c2a5","#fc8d62","#8da0cb","#e78ac3","#a6d854"],

+6: ["#66c2a5","#fc8d62","#8da0cb","#e78ac3","#a6d854","#ffd92f"],

+7: ["#66c2a5","#fc8d62","#8da0cb","#e78ac3","#a6d854","#ffd92f","#e5c494"],

+8: ["#66c2a5","#fc8d62","#8da0cb","#e78ac3","#a6d854","#ffd92f","#e5c494","#b3b3b3"]

+},Set3: {

+3: ["#8dd3c7","#ffffb3","#bebada"],

+4: ["#8dd3c7","#ffffb3","#bebada","#fb8072"],

+5: ["#8dd3c7","#ffffb3","#bebada","#fb8072","#80b1d3"],

+6: ["#8dd3c7","#ffffb3","#bebada","#fb8072","#80b1d3","#fdb462"],

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+11: ["#8dd3c7","#ffffb3","#bebada","#fb8072","#80b1d3","#fdb462","#b3de69","#fccde5","#d9d9d9","#bc80bd","#ccebc5"],

+12: ["#8dd3c7","#ffffb3","#bebada","#fb8072","#80b1d3","#fdb462","#b3de69","#fccde5","#d9d9d9","#bc80bd","#ccebc5","#ffed6f"]

+}};

diff --git a/gn2/wqflask/static/new/javascript/compare_traits_scatterplot.js b/gn2/wqflask/static/new/javascript/compare_traits_scatterplot.js
new file mode 100644
index 00000000..5c0ef16c
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/compare_traits_scatterplot.js
@@ -0,0 +1,121 @@
+// Generated by CoffeeScript 1.8.0
+var root;
+
+root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+root.create_scatterplot = function(json_ids, json_data) {
+  var data, h, halfh, halfw, indID, margin, mychart, totalh, totalw, w;
+  console.log("TESTING2");
+  h = 400;
+  w = 500;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  halfh = h + margin.top + margin.bottom;
+  totalh = halfh * 2;
+  halfw = w + margin.left + margin.right;
+  totalw = halfw * 2;
+  mychart = scatterplot().xvar(0).yvar(1).xlab("X").ylab("Y").height(h).width(w).margin(margin);
+  data = json_data;
+  indID = json_ids;
+  d3.select("div#comparison_scatterplot").datum({
+    data: data,
+    indID: indID
+  }).call(mychart);
+  return mychart.pointsSelect().on("mouseover", function(d) {
+    return d3.select(this).attr("r", mychart.pointsize() * 3);
+  }).on("mouseout", function(d) {
+    return d3.select(this).attr("r", mychart.pointsize());
+  });
+};
+
+root.create_scatterplots = function(trait_names, json_ids, json_data) {
+  var brush, brushend, brushmove, brushstart, chart, data, h, halfh, halfw, i, indID, margin, mychart, num_traits, svg, totalh, totalw, w, xscale, xshift, xvar, yscale, yshift, yvar, _i, _j, _k, _ref, _ref1, _ref2, _results;
+  console.log("json_data:", json_data);
+  console.log("trait_names:", trait_names);
+  num_traits = json_data.length;
+  console.log("num_traits:", num_traits);
+  h = 300;
+  w = 400;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  halfh = h + margin.top + margin.bottom;
+  totalh = halfh * (num_traits - 1);
+  halfw = w + margin.left + margin.right;
+  totalw = halfw;
+  xvar = [];
+  yvar = [];
+  xshift = [];
+  yshift = [];
+  for (i = _i = 0, _ref = num_traits - 1; 0 <= _ref ? _i <= _ref : _i >= _ref; i = 0 <= _ref ? ++_i : --_i) {
+    xvar.push(i);
+    yvar.push(0);
+    xshift.push(0);
+    yshift.push(halfh * i);
+  }
+  console.log("xvar:", xvar);
+  console.log("yvar:", yvar);
+  svg = d3.select("div#comparison_scatterplot").append("svg").attr("height", totalh).attr("width", totalw);
+  mychart = [];
+  chart = [];
+  for (i = _j = 1, _ref1 = num_traits - 1; 1 <= _ref1 ? _j <= _ref1 : _j >= _ref1; i = 1 <= _ref1 ? ++_j : --_j) {
+    mychart[i - 1] = scatterplot().xvar(xvar[i]).yvar(yvar[i]).nxticks(6).height(h).width(w).margin(margin).pointsize(4).xlab("" + trait_names[i - 1]).ylab("" + trait_names[0]).title("" + trait_names[0] + " vs. " + trait_names[i - 1]);
+    data = json_data;
+    indID = json_ids;
+    chart[i - 1] = svg.append("g").attr("id", "chart" + (i - 1)).attr("transform", "translate(" + xshift[i] + "," + yshift[i - 1] + ")");
+    chart[i - 1].datum({
+      data: data,
+      indID: indID
+    }).call(mychart[i - 1]);
+  }
+  brush = [];
+  brushstart = function(i) {
+    return function() {
+      var j, _k, _ref2;
+      for (j = _k = 0, _ref2 = num_traits - 2; 0 <= _ref2 ? _k <= _ref2 : _k >= _ref2; j = 0 <= _ref2 ? ++_k : --_k) {
+        if (j !== i) {
+          chart[j].call(brush[j].clear());
+        }
+      }
+      return svg.selectAll("circle").attr("opacity", 0.6).classed("selected", false);
+    };
+  };
+  brushmove = function(i) {
+    return function() {
+      var e;
+      svg.selectAll("circle").classed("selected", false);
+      e = brush[i].extent();
+      return chart[i].selectAll("circle").classed("selected", function(d, j) {
+        var circ, cx, cy, selected;
+        circ = d3.select(this);
+        cx = circ.attr("cx");
+        cy = circ.attr("cy");
+        selected = e[0][0] <= cx && cx <= e[1][0] && e[0][1] <= cy && cy <= e[1][1];
+        if (selected) {
+          svg.selectAll("circle.pt" + j).classed("selected", true);
+        }
+        return selected;
+      });
+    };
+  };
+  brushend = function() {
+    return svg.selectAll("circle").attr("opacity", 1);
+  };
+  xscale = d3.scale.linear().domain([margin.left, margin.left + w]).range([margin.left, margin.left + w]);
+  yscale = d3.scale.linear().domain([margin.top, margin.top + h]).range([margin.top, margin.top + h]);
+  _results = [];
+  for (i = _k = 0, _ref2 = num_traits - 2; 0 <= _ref2 ? _k <= _ref2 : _k >= _ref2; i = 0 <= _ref2 ? ++_k : --_k) {
+    brush[i] = d3.svg.brush().x(xscale).y(yscale).on("brushstart", brushstart(i)).on("brush", brushmove(i)).on("brushend", brushend);
+    _results.push(chart[i].call(brush[i]));
+  }
+  return _results;
+};
diff --git a/gn2/wqflask/static/new/javascript/comparison_bar_chart.js b/gn2/wqflask/static/new/javascript/comparison_bar_chart.js
new file mode 100644
index 00000000..5e73807c
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/comparison_bar_chart.js
@@ -0,0 +1,25 @@
+generate_traces = function() {
+  traces = [];
+  for (i = 0, _len = js_data.traits.length; i < _len; i++) {
+    this_trace = {
+      x: js_data.samples,
+      y: js_data.sample_data[i],
+      name: js_data.traits[i],
+      type: 'bar',
+      bargap: 20
+    }
+
+    traces.push(this_trace)   
+  }
+
+  return traces
+}
+
+create_bar_chart = function() {
+  var data = generate_traces()
+  var layout = {barmode: 'group', bargap: 5};
+
+  Plotly.newPlot('comp_bar_chart', data, layout);
+}
+
+create_bar_chart();
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/corr_matrix.js b/gn2/wqflask/static/new/javascript/corr_matrix.js
new file mode 100644
index 00000000..ad0fc8b8
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/corr_matrix.js
@@ -0,0 +1,159 @@
+// Generated by CoffeeScript 1.8.0
+var iplotCorr, root;
+
+root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+iplotCorr = function(data, chartOpts) {
+  var cells, chartdivid, colorScale, corXscale, corYscale, corZscale, corcolors, corr, corr_tip, corrplot, cortitle, drawScatter, height, i, j, margin, nGroup, ncorrX, ncorrY, nind, nvar, pixel_height, pixel_width, rectcolor, scat_tip, scatcolors, scatterplot, scattitle, svg, totalh, totalw, width, zlim, _ref, _ref1, _ref2, _ref3, _ref4, _ref5, _ref6, _ref7, _ref8, _ref9;
+  height = (_ref = chartOpts != null ? chartOpts.height : void 0) != null ? _ref : 450;
+  width = (_ref1 = chartOpts != null ? chartOpts.width : void 0) != null ? _ref1 : height;
+  margin = (_ref2 = chartOpts != null ? chartOpts.margin : void 0) != null ? _ref2 : {
+    left: 70,
+    top: 40,
+    right: 5,
+    bottom: 70,
+    inner: 5
+  };
+  corcolors = (_ref3 = chartOpts != null ? chartOpts.corcolors : void 0) != null ? _ref3 : ["darkslateblue", "white", "crimson"];
+  zlim = (_ref4 = chartOpts != null ? chartOpts.zlim : void 0) != null ? _ref4 : [-1, 0, 1];
+  rectcolor = (_ref5 = chartOpts != null ? chartOpts.rectcolor : void 0) != null ? _ref5 : d3.rgb(230, 230, 230);
+  cortitle = (_ref6 = chartOpts != null ? chartOpts.cortitle : void 0) != null ? _ref6 : "";
+  scattitle = (_ref7 = chartOpts != null ? chartOpts.scattitle : void 0) != null ? _ref7 : "";
+  scatcolors = (_ref8 = chartOpts != null ? chartOpts.scatcolors : void 0) != null ? _ref8 : null;
+  chartdivid = (_ref9 = chartOpts != null ? chartOpts.chartdivid : void 0) != null ? _ref9 : 'chart';
+  totalh = height + margin.top + margin.bottom;
+  totalw = (width + margin.left + margin.right) * 2;
+  svg = d3.select("div#" + chartdivid).append("svg").attr("height", totalh).attr("width", totalw);
+  corrplot = svg.append("g").attr("id", "corplot").attr("transform", "translate(" + margin.left + "," + margin.top + ")");
+  scatterplot = svg.append("g").attr("id", "scatterplot").attr("transform", "translate(" + (margin.left * 2 + margin.right + width) + "," + margin.top + ")");
+  nind = data.indID.length;
+  nvar = data["var"].length;
+  ncorrX = data.cols.length;
+  ncorrY = data.rows.length;
+  corXscale = d3.scale.ordinal().domain(d3.range(ncorrX)).rangeBands([0, width]);
+  corYscale = d3.scale.ordinal().domain(d3.range(ncorrY)).rangeBands([0, height]);
+  corZscale = d3.scale.linear().domain(zlim).range(corcolors);
+  pixel_width = corXscale(1) - corXscale(0);
+  pixel_height = corYscale(0) - corYscale(1);
+  corr = [];
+  for (i in data.corr) {
+    for (j in data.corr[i]) {
+      corr.push({
+        row: i,
+        col: j,
+        value: data.corr[i][j]
+      });
+    }
+    corrplot.append("text").attr("class", "corrlabel_y").attr("y", corYscale(i) - pixel_height / 2).attr("x", -margin.left * 0.1).text(data["var"][data.rows[i]]).attr("dominant-baseline", "middle").attr("text-anchor", "end");
+    //corrplot.append("text").attr("class", "corrlabel_x").attr("x", corXscale(i) + pixel_width / 2).attr("y", height + margin.bottom * 0.2).text(data["var"][data.cols[i]]).attr("dominant-baseline", "middle").attr("text-anchor", "middle");
+
+  }
+  scatterplot.append("rect").attr("height", height).attr("width", width).attr("fill", rectcolor).attr("stroke", "black").attr("stroke-width", 1).attr("pointer-events", "none");
+  corr_tip = d3.tip().attr('class', 'd3-tip').html(function(d) {
+    return d3.format(".2f")(d.value);
+  }).direction('e').offset([0, 10]);
+  corrplot.call(corr_tip);
+
+  cells = corrplot.selectAll("empty").data(corr).enter().append("rect").attr("class", "cell").attr("x", function(d) {
+    return corXscale(d.col);
+  }).attr("y", function(d) {
+    return corYscale(d.row);
+  }).attr("width", corXscale.rangeBand()).attr("height", corYscale.rangeBand()).attr("fill", function(d) {
+    return corZscale(d.value);
+  }).attr("stroke", "none").attr("stroke-width", 2).on("mouseover", function(d) {
+    d3.select(this).attr("stroke", "black");
+    corr_tip.show(d);
+    //corrplot.append("text").attr("class", "corrlabel").attr("x", corXscale(d.col) + pixel_width / 2).attr("y", height + margin.bottom * 0.2).text(data["var"][data.cols[d.col]]).attr("dominant-baseline", "middle").attr("text-anchor", "middle");
+    //return corrplot.append("text").attr("class", "corrlabel_x").attr("y", corYscale(d.row) + pixel_height / 2).attr("x", -margin.left * 0.1).text(data["var"][data.rows[d.row]]).attr("dominant-baseline", "middle").attr("text-anchor", "end");
+    return corrplot.append("text").attr("class", "corrlabel_x").attr("x", corXscale(d.col) + pixel_width / 2).attr("y", height + margin.bottom * 0.2).text(data["var"][data.cols[d.col]]).attr("dominant-baseline", "middle").attr("text-anchor", "middle");
+  }).on("mouseout", function(d) {
+    corr_tip.hide(d);
+    d3.selectAll("text.corrlabel_x").remove();
+    return d3.select(this).attr("stroke", "none");
+  }).on("click", function(d) {
+    return drawScatter(d.col, d.row);
+  });
+  nGroup = d3.max(data.group);
+  if (!(scatcolors != null) || scatcolors.length < nGroup) {
+    if (nGroup === 1) {
+      scatcolors = [d3.rgb(150, 150, 150)];
+    } else if (nGroup <= 3) {
+      scatcolors = ["crimson", "green", "darkslateblue"];
+    } else {
+      if (nGroup <= 10) {
+        colorScale = d3.scale.category10();
+      } else {
+        colorScale = d3.scale.category20();
+      }
+      scatcolors = (function() {
+        var _results;
+        _results = [];
+        for (i in d3.range(nGroup)) {
+          _results.push(colorScale(i));
+        }
+        return _results;
+      })();
+    }
+  }
+  scat_tip = d3.tip().attr('class', 'd3-tip').html(function(d, i) {
+    return data.indID[i];
+  }).direction('e').offset([0, 10]);
+  scatterplot.call(scat_tip);
+  drawScatter = function(i, j) {
+    var xScale, xticks, yScale, yticks;
+    d3.selectAll("circle.points").remove();
+    d3.selectAll("text.axes").remove();
+    d3.selectAll("line.axes").remove();
+    console.log("data.dat:", data.dat);
+    console.log("data.cols:", data.cols);
+    xScale = d3.scale.linear().domain(d3.extent(data.dat[data.cols[i]])).range([margin.inner, width - margin.inner]);
+    yScale = d3.scale.linear().domain(d3.extent(data.dat[data.rows[j]])).range([height - margin.inner, margin.inner]);
+    scatterplot.append("text").attr("id", "xaxis").attr("class", "axes").attr("x", width / 2).attr("y", height + margin.bottom * 0.7).text(data["var"][data.cols[i]]).attr("dominant-baseline", "middle").attr("text-anchor", "middle").attr("fill", "slateblue");
+    scatterplot.append("text").attr("id", "yaxis").attr("class", "axes").attr("x", -margin.left * 0.8).attr("y", height / 2).text(data["var"][data.rows[j]]).attr("dominant-baseline", "middle").attr("text-anchor", "middle").attr("transform", "rotate(270," + (-margin.left * 0.8) + "," + (height / 2) + ")").attr("fill", "slateblue");
+    xticks = xScale.ticks(5);
+    yticks = yScale.ticks(5);
+    scatterplot.selectAll("empty").data(xticks).enter().append("text").attr("class", "axes").text(function(d) {
+      return formatAxis(xticks)(d);
+    }).attr("x", function(d) {
+      return xScale(d);
+    }).attr("y", height + margin.bottom * 0.3).attr("dominant-baseline", "middle").attr("text-anchor", "middle");
+    scatterplot.selectAll("empty").data(yticks).enter().append("text").attr("class", "axes").text(function(d) {
+      return formatAxis(yticks)(d);
+    }).attr("x", -margin.left * 0.1).attr("y", function(d) {
+      return yScale(d);
+    }).attr("dominant-baseline", "middle").attr("text-anchor", "end");
+    scatterplot.selectAll("empty").data(xticks).enter().append("line").attr("class", "axes").attr("x1", function(d) {
+      return xScale(d);
+    }).attr("x2", function(d) {
+      return xScale(d);
+    }).attr("y1", 0).attr("y2", height).attr("stroke", "white").attr("stroke-width", 1);
+    scatterplot.selectAll("empty").data(yticks).enter().append("line").attr("class", "axes").attr("y1", function(d) {
+      return yScale(d);
+    }).attr("y2", function(d) {
+      return yScale(d);
+    }).attr("x1", 0).attr("x2", width).attr("stroke", "white").attr("stroke-width", 1);
+    return scatterplot.selectAll("empty").data(d3.range(nind)).enter().append("circle").attr("class", "points").attr("cx", function(d) {
+      return xScale(data.dat[data.cols[i]][d]);
+    }).attr("cy", function(d) {
+      return yScale(data.dat[data.rows[j]][d]);
+    }).attr("r", function(d) {
+      var x, y;
+      x = data.dat[data.cols[i]][d];
+      y = data.dat[data.rows[j]][d];
+      if ((x != "") && (y != "")) {
+        return 3;
+      } else {
+        return null;
+      }
+    }).attr("stroke", "black").attr("stroke-width", 1).attr("fill", function(d) {
+      return scatcolors[data.group[d] - 1];
+    }).on("mouseover", scat_tip.show).on("mouseout", scat_tip.hide);
+  };
+  corrplot.append("rect").attr("height", height).attr("width", width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", 1).attr("pointer-events", "none");
+  scatterplot.append("rect").attr("height", height).attr("width", width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", 1).attr("pointer-events", "none");
+  corrplot.append("text").text(cortitle).attr("id", "corrtitle").attr("x", width / 2).attr("y", -margin.top / 2).attr("dominant-baseline", "middle").attr("text-anchor", "middle");
+  scatterplot.append("text").text(scattitle).attr("id", "scattitle").attr("x", width / 2).attr("y", -margin.top / 2).attr("dominant-baseline", "middle").attr("text-anchor", "middle");
+  return d3.select("div#caption").style("opacity", 1);
+};
+
+root.corr_matrix = iplotCorr;
diff --git a/gn2/wqflask/static/new/javascript/corr_scatter_plot.js b/gn2/wqflask/static/new/javascript/corr_scatter_plot.js
new file mode 100644
index 00000000..553423cf
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/corr_scatter_plot.js
@@ -0,0 +1,73 @@
+// Generated by CoffeeScript 1.8.0
+var Scatter_Plot, root;
+
+root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+Scatter_Plot = (function() {
+  function Scatter_Plot() {
+    var chart, data, g, height, i, main, margin, maxx, maxy, minx, miny, sample1, sample2, samplename, samples_1, samples_2, text, width, x, xAxis, y, yAxis;
+    data = new Array();
+    samples_1 = js_data.samples_1;
+    samples_2 = js_data.samples_2;
+    i = 0;
+    for (samplename in samples_1) {
+      sample1 = samples_1[samplename];
+      sample2 = samples_2[samplename];
+      data[i++] = [sample1.value, sample2.value];
+    }
+    margin = {
+      top: 100,
+      right: 15,
+      bottom: 60,
+      left: 60
+    };
+    width = js_data.width - margin.left - margin.right;
+    height = js_data.height - margin.top - margin.bottom;
+    minx = d3.min(data, function(d) {
+      return d[0];
+    }) * 0.95;
+    maxx = d3.max(data, function(d) {
+      return d[0];
+    }) * 1.05;
+    miny = d3.min(data, function(d) {
+      return d[1];
+    }) * 0.95;
+    maxy = d3.max(data, function(d) {
+      return d[1];
+    }) * 1.05;
+    x = d3.scale.linear().domain([minx, maxx]).range([0, width]);
+    y = d3.scale.linear().domain([miny, maxy]).range([height, 0]);
+    chart = d3.select("#scatter_plot").append("svg:svg").attr("width", width + margin.right + margin.left).attr("height", height + margin.top + margin.bottom).attr("class", "chart");
+    main = chart.append("g").attr("transform", "translate(" + margin.left + "," + margin.top + ")").attr("width", width).attr("height", height).attr("class", "main");
+    xAxis = d3.svg.axis().scale(x).orient("bottom");
+    main.append("g").attr("transform", "translate(0," + height + ")").attr("class", "main axis date").call(xAxis);
+    yAxis = d3.svg.axis().scale(y).orient("left");
+    main.append("g").attr("transform", "translate(0,0)").attr("class", "main axis date").call(yAxis);
+    g = main.append("svg:g");
+    g.selectAll("scatter-dots").data(data).enter().append("svg:circle").attr("cx", function(d) {
+      return x(d[0]);
+    }).attr("cy", function(d) {
+      return y(d[1]);
+    }).attr("fill", js_data.circle_color).attr("r", js_data.circle_radius);
+    main.append("line").attr("x1", x(minx)).attr("y1", y(js_data.slope * minx + js_data.intercept)).attr("x2", x(maxx * 0.995)).attr("y2", y(js_data.slope * maxx * 0.995 + js_data.intercept)).style("stroke", js_data.line_color).style("stroke-width", js_data.line_width);
+    chart.append("text").attr("x", width / 2).attr("y", margin.top / 2 - 25).text("Sample Correlation Scatterplot");
+    text = "";
+    text += "N=" + js_data.num_overlap;
+    chart.append("text").attr("x", margin.left).attr("y", margin.top / 2 - 5).text(text);
+    text = "";
+    text += "r=" + js_data.r_value + "\t";
+    text += "p(r)=" + js_data.p_value;
+    chart.append("text").attr("x", margin.left).attr("y", margin.top / 2 + 15).text(text);
+    text = "";
+    text += "slope=" + js_data.slope + "\t";
+    text += "intercept=" + js_data.intercept;
+    chart.append("text").attr("x", margin.left).attr("y", margin.top / 2 + 35).text(text);
+    chart.append("text").attr("x", width / 2).attr("y", height + margin.top + 35).text(js_data.trait_1);
+    chart.append("text").attr("x", 20).attr("y", height / 2 + margin.top + 30).attr("transform", "rotate(-90 20," + (height / 2 + margin.top + 30) + ")").text(js_data.trait_2);
+  }
+
+  return Scatter_Plot;
+
+})();
+
+root.Scatter_Plot = Scatter_Plot;
diff --git a/gn2/wqflask/static/new/javascript/create_corr_matrix.js b/gn2/wqflask/static/new/javascript/create_corr_matrix.js
new file mode 100644
index 00000000..c0c39fbc
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/create_corr_matrix.js
@@ -0,0 +1,94 @@
+var neg_color_scale = chroma.scale(['#91bfdb', '#ffffff']).domain([-1, -0.4]);
+var pos_color_scale = chroma.scale(['#ffffff', '#fc8d59']).domain([0.4, 1])
+$('.corr_cell').each( function () {
+  corr_value = parseFloat($(this).find('span.corr_value').text())
+  if (corr_value >= 0.5){
+    $(this).css('background-color', pos_color_scale(parseFloat(corr_value))._rgb)
+  }
+  else if (corr_value <= -0.5) {
+    $(this).css('background-color', neg_color_scale(parseFloat(corr_value))._rgb)
+  }
+  else {
+    $(this).css('background-color', 'white')
+  }
+});
+
+$('#short_labels').click( function (){
+  if ($('.short_check').css("display") == "none"){
+    $('.short_check').css("display", "inline-block")
+  } else {
+    $('.short_check').css("display", "none")
+  }
+  $('.shortName').each( function() {
+    if ($(this).css("display") == "none"){
+      $(this).css("display", "block");
+    }
+    else {
+      $(this).css("display", "none");
+    }
+  });
+});
+
+$('#long_labels').click( function (){
+  if ($('.long_check').css("display") == "none"){
+    $('.long_check').css("display", "inline-block")
+  } else {
+    $('.long_check').css("display", "none")
+  }
+  $('.verboseName').each( function() {
+    if ($(this).css("display") == "none"){
+      $(this).css("display", "block");
+    }
+    else {
+      $(this).css("display", "none");
+    }
+  });
+});
+
+select_all = function() {
+  $(".trait_checkbox").each(function() {
+      $(this).prop('checked', true);
+  });
+};
+
+deselect_all = function() {
+  $(".trait_checkbox").each(function() {
+      $(this).prop('checked', false);
+  });
+};
+
+change_buttons = function() {
+  num_checked = $('.trait_checkbox:checked').length;
+  if (num_checked === 0) {
+    $("#add").prop("disabled", true);
+  } else {
+    $("#add").prop("disabled", false);
+  }
+};
+
+add = function() {
+  var traits;
+  traits = $("input[name=pca_trait]:checked").map(function() {
+    return $(this).val();
+  }).get();
+
+  var traits_hash = md5(traits.toString());
+
+  $.ajax({
+        type: "POST",
+        url: "/collections/store_trait_list",
+        data: {
+          hash: traits_hash,
+          traits: traits.toString()
+        }
+  });
+
+  return $.colorbox({
+    href: "/collections/add?hash=" + traits_hash
+  });
+}
+
+$("#select_all").click(select_all);
+$("#deselect_all").click(deselect_all);
+$("#add").click(add);
+$(".btn, .trait_checkbox").click(change_buttons);
diff --git a/gn2/wqflask/static/new/javascript/create_datatable.js b/gn2/wqflask/static/new/javascript/create_datatable.js
new file mode 100644
index 00000000..541dfdf5
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/create_datatable.js
@@ -0,0 +1,117 @@
+create_table = function(tableId="trait_table", tableData = [], columnDefs = [], customSettings = {}) {
+
+    loadDataTable(tableId=tableId, tableData=tableData, customSettings, firstRun=true)
+
+    var widthChange = 0; // For storing the change in width so overall table width can be adjusted by that amount
+    function loadDataTable(tableId, tableData, customSettings, firstRun=false){
+        if (!firstRun){
+            columnDefs = setUserColumnsDefWidths(tableId, columnDefs);
+        }
+
+        tableSettings = {
+            "drawCallback": function( settings ) {
+                $('#' + tableId + ' tr').off().on("click", function(event) {
+                  if (event.target.type !== 'checkbox' && event.target.tagName.toLowerCase() !== 'a') {
+                    var obj =$(this).find('input');
+                    obj.prop('checked', !obj.is(':checked'));
+                  }
+                  if ($(this).hasClass("selected") && event.target.tagName.toLowerCase() !== 'a'){
+                    $(this).removeClass("selected")
+                  } else if (event.target.tagName.toLowerCase() !== 'a') {
+                    $(this).addClass("selected")
+                  }
+                  change_buttons()
+                });
+            },
+            "columns": columnDefs,
+            "sDom": "iti",
+            "destroy": true,
+            "autoWidth": false,
+            "bSortClasses": false,
+            "scrollY": "100vh",
+            "scrollX": "100%",
+            "scrollCollapse": true,
+            "scroller":  true,
+            "iDisplayLength": -1,
+            "initComplete": function (settings) {
+                // Add JQueryUI resizable functionality to each th in the ScrollHead table
+                $('#' + tableId + '_wrapper .dataTables_scrollHead thead th').resizable({
+                    handles: "e",
+                    alsoResize: '#' + tableId + '_wrapper .dataTables_scrollHead table', //Not essential but makes the resizing smoother
+                    resize: function( event, ui ) {
+                        widthChange = ui.size.width - ui.originalSize.width;
+                    },
+                    stop: function () {
+                        saveColumnSettings(tableId, theTable);
+                        loadDataTable(tableId, tableData, customSettings, firstRun=false);
+                    }
+                });
+            }
+        }
+
+        if (tableData.length > 0){
+            tableSettings["data"] = tableData
+        }
+
+        // Replace default settings with custom settings or add custom settings if not already set in default settings
+        $.each(customSettings, function(key, value) {
+            tableSettings[key] = value
+        });
+
+        if (!firstRun){
+            $('#' + tableId + '_container').css("width", String($('#' + tableId).width() + widthChange + 17) + "px"); // Change the container width by the change in width of the adjusted column, so the overall table size adjusts properly
+
+            let checkedRows = getCheckedRows(tableId);
+            theTable = $('#' + tableId).DataTable(tableSettings);
+            if (checkedRows.length > 0){
+                recheckRows(theTable, checkedRows);
+            }
+        } else {
+            theTable = $('#' + tableId).DataTable(tableSettings);
+            theTable.draw();
+            $('#' + tableId + '_container').css("width", String($('#' + tableId).width() + 17) + "px");
+            theTable.columns.adjust().draw();
+        }
+    }
+
+    theTable.on( 'order.dt search.dt draw.dt', function () {
+        theTable.column(1, {search:'applied', order:'applied'}).nodes().each( function (cell, i) {
+        cell.innerHTML = i+1;
+        } );
+    } ).draw();
+
+    window.addEventListener('resize', function(){
+        theTable.columns.adjust();
+    });
+
+    $('#' + tableId + '_searchbox').on( 'keyup', function () {
+        theTable.search($(this).val()).draw();
+    } );
+
+    $('.toggle-vis').on('click', function (e) {
+        e.preventDefault();
+
+        function toggleColumn(column) {
+            // Toggle column visibility
+            column.visible( ! column.visible() );
+            if (column.visible()){
+                $(this).removeClass("active");
+            } else {
+                $(this).addClass("active");
+            }
+        }
+
+        // Get the column API object
+        var targetCols = $(this).attr('data-column').split(",")
+        for (let i = 0; i < targetCols.length; i++){
+            var column = theTable.column( targetCols[i] );
+            toggleColumn(column);
+        }
+    } );
+
+    $('#redraw').on('click', function (e) {
+        e.preventDefault();
+        trait_table.columns().visible( true );
+        $('.toggle-vis.active').removeClass('active');
+    });
+}
diff --git a/gn2/wqflask/static/new/javascript/create_heatmap.js b/gn2/wqflask/static/new/javascript/create_heatmap.js
new file mode 100644
index 00000000..f3ae2a46
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/create_heatmap.js
@@ -0,0 +1,14 @@
+// Generated by CoffeeScript 1.8.0
+var create_heatmap;
+
+create_heatmap = function() {
+  var data, h, mychart, w;
+  h = 500;
+  w = 1200;
+  mychart = lodheatmap().height(h).width(w);
+  data = js_data.json_data;
+  console.log("data:", data);
+  return d3.select("div#chart").datum(data).call(mychart);
+};
+
+create_heatmap();
diff --git a/gn2/wqflask/static/new/javascript/create_lodchart.js b/gn2/wqflask/static/new/javascript/create_lodchart.js
new file mode 100644
index 00000000..778eed3a
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/create_lodchart.js
@@ -0,0 +1,50 @@
+//var create_lod_chart;
+
+create_lod_chart = function() {
+  var additive, chrrect, data, h, halfh, margin, mychart, totalh, totalw, w;
+  h = 500;
+  w = 1200;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  halfh = h + margin.top + margin.bottom;
+  totalh = halfh * 2;
+  totalw = w + margin.left + margin.right;
+  if ('additive' in js_data) {
+    additive = js_data.additive;
+  } else {
+    additive = false;
+  }
+  console.log("js_data:", js_data);
+  mychart = lodchart().lodvarname("lod.hk").height(h).width(w).margin(margin).ylab(js_data.result_score_type + " score").manhattanPlot(js_data.manhattan_plot);
+  data = js_data.json_data;
+  d3.select("div#topchart").datum(data).call(mychart);
+  chrrect = mychart.chrSelect();
+  chrrect.on("mouseover", function() {
+    return d3.select(this).attr("fill", "#E9CFEC");
+  }).on("mouseout", function(d, i) {
+    return d3.select(this).attr("fill", function() {
+      if (i % 2) {
+        return "#F1F1F9";
+      }
+      return "#FBFBFF";
+    });
+  });
+  return mychart.markerSelect().on("click", function(d) {
+    var r;
+    r = d3.select(this).attr("r");
+    return d3.select(this).transition().duration(500).attr("r", r * 3).transition().duration(500).attr("r", r);
+  });
+};
+
+create_lod_chart()
+
+/*
+$(function() {
+  return root.create_lod_chart = create_lod_chart;
+});
+*/
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/create_manhattan_plot.js b/gn2/wqflask/static/new/javascript/create_manhattan_plot.js
new file mode 100644
index 00000000..30af484d
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/create_manhattan_plot.js
@@ -0,0 +1,68 @@
+// Generated by CoffeeScript 1.8.0
+var create_manhattan_plot;
+
+create_manhattan_plot = function() {
+  var chrrect, data, h, halfh, margin, mychart, totalh, totalw, w;
+  h = 500;
+  w = 1200;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  halfh = h + margin.top + margin.bottom;
+  totalh = halfh * 2;
+  totalw = w + margin.left + margin.right;
+  console.log("js_data:", js_data);
+  mychart = lodchart().lodvarname("lod.hk").height(h).width(w).margin(margin).ylab("LOD score").manhattanPlot(js_data.manhattan_plot);
+  data = js_data.json_data;
+  d3.select("div#topchart").datum(data).call(mychart);
+  chrrect = mychart.chrSelect();
+  chrrect.on("mouseover", function() {
+    return d3.select(this).attr("fill", "#E9CFEC");
+  }).on("mouseout", function(d, i) {
+    return d3.select(this).attr("fill", function() {
+      if (i % 2) {
+        return "#F1F1F9";
+      }
+      return "#FBFBFF";
+    });
+  });
+  return mychart.markerSelect().on("click", function(d) {
+    var r;
+    r = d3.select(this).attr("r");
+    return d3.select(this).transition().duration(500).attr("r", r * 3).transition().duration(500).attr("r", r);
+  });
+};
+
+create_manhattan_plot();
+
+$("#export").click((function(_this) {
+  return function() {
+    var filename, form, svg, svg_xml;
+    svg = $("#topchart").find("svg")[0];
+    svg_xml = (new XMLSerializer).serializeToString(svg);
+    console.log("svg_xml:", svg_xml);
+    filename = "manhattan_plot_" + js_data.this_trait;
+    form = $("#exportform");
+    form.find("#data").val(svg_xml);
+    form.find("#filename").val(filename);
+    return form.submit();
+  };
+})(this));
+
+$("#export_pdf").click((function(_this) {
+  return function() {
+    var filename, form, svg, svg_xml;
+    svg = $("#topchart").find("svg")[0];
+    svg_xml = (new XMLSerializer).serializeToString(svg);
+    console.log("svg_xml:", svg_xml);
+    filename = "manhattan_plot_" + js_data.this_trait;
+    form = $("#exportpdfform");
+    form.find("#data").val(svg_xml);
+    form.find("#filename").val(filename);
+    return form.submit();
+  };
+})(this));
diff --git a/gn2/wqflask/static/new/javascript/ctl_graph.js b/gn2/wqflask/static/new/javascript/ctl_graph.js
new file mode 100644
index 00000000..bd950592
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/ctl_graph.js
@@ -0,0 +1,193 @@
+window.onload=function() {
+    // id of Cytoscape Web container div
+    //var div_id = "cytoscapeweb";
+
+    var cy = cytoscape({
+      container: $('#cytoscapeweb'), // container to render in
+
+      elements: elements_list,
+
+      style: [ // the stylesheet for the graph
+          {    
+            selector: 'node',
+            style: {
+              'background-color': '#666',
+              'label': 'data(symbol)',
+              'font-size': 10
+            }
+          },
+
+          {
+            selector: 'edge',
+            style: {
+              'width': 'data(width)',
+              'line-color': 'data(color)',
+              'target-arrow-color': '#ccc',
+              'target-arrow-shape': 'none',
+              'font-size': 8,
+              'curve-style': 'bezier'
+            }
+          }
+      ],
+      
+      zoom: 12,
+      layout: { name: 'circle',
+                fit: true, // whether to fit the viewport to the graph
+                padding: 30 // the padding on fit
+                //idealEdgeLength: function( edge ){ return edge.data['correlation']*10; },                
+              }, 
+
+      
+      zoomingEnabled: true,
+      userZoomingEnabled: true,
+      panningEnabled: true,
+      userPanningEnabled: true,
+      boxSelectionEnabled: false,
+      selectionType: 'single',
+
+      // rendering options:
+      styleEnabled: true
+    });
+
+    var eles = cy.$() // var containing all elements, so elements can be restored after being removed
+    
+    var defaults = {
+      zoomFactor: 0.05, // zoom factor per zoom tick
+      zoomDelay: 45, // how many ms between zoom ticks
+      minZoom: 0.1, // min zoom level
+      maxZoom: 10, // max zoom level
+      fitPadding: 30, // padding when fitting
+      panSpeed: 10, // how many ms in between pan ticks
+      panDistance: 10, // max pan distance per tick
+      panDragAreaSize: 75, // the length of the pan drag box in which the vector for panning is calculated (bigger = finer control of pan speed and direction)
+      panMinPercentSpeed: 0.25, // the slowest speed we can pan by (as a percent of panSpeed)
+      panInactiveArea: 8, // radius of inactive area in pan drag box
+      panIndicatorMinOpacity: 0.5, // min opacity of pan indicator (the draggable nib); scales from this to 1.0
+      zoomOnly: false, // a minimal version of the ui only with zooming (useful on systems with bad mousewheel resolution)
+      fitSelector: undefined, // selector of elements to fit
+      animateOnFit: function(){ // whether to animate on fit
+        return false;
+      },
+      fitAnimationDuration: 1000, // duration of animation on fit
+
+      // icon class names
+      sliderHandleIcon: 'fa fa-minus',
+      zoomInIcon: 'fa fa-plus',
+      zoomOutIcon: 'fa fa-minus',
+      resetIcon: 'fa fa-expand'
+    };
+
+    cy.panzoom( defaults );
+    
+    function create_qtips(cy){
+        cy.nodes().qtip({
+                            content: function(){
+                                gn_link = '<b>'+'<a href="' + gn2_url + '/show_trait?trait_id=' + this.data().sid + '&dataset=' + this.data().dataset + '" >'+this.data().id +'</a>'+'</b><br>'
+                                ncbi_link = '<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=' + this.data().geneid + '" >NCBI<a>'+'<br>' 
+                                omim_link = '<a href="http://www.ncbi.nlm.nih.gov/omim/' + this.data().omim + '" >OMIM<a>'+'<br>' 
+                                qtip_content = gn_link + ncbi_link + omim_link
+                                return qtip_content
+                            },
+                            position: {
+                                my: 'top center',
+                                at: 'bottom center'
+                            },
+                            style: {
+                                classes: 'qtip-bootstrap',
+                                tip: {
+                                    width: 16,
+                                    height: 8
+                                }
+                            }
+                        });
+                        
+        cy.edges().qtip({
+                            content: function(){
+                                edge_ID = '<b>Edge: ' + this.data().id + '</b><br>'
+                                lod_score = 'LOD: ' + this.data().lod + '<br>'
+                                return edge_ID + lod_score
+                            },
+                            position: {
+                                my: 'top center',
+                                at: 'bottom center'
+                            },
+                            style: {
+                                classes: 'qtip-bootstrap',
+                                tip: {
+                                    width: 16,
+                                    height: 8
+                                }
+                            }
+                        });    
+    }
+    
+    create_qtips(cy)
+    
+    $('#slide').change(function() {
+        eles.restore()
+        
+        console.log(eles)
+        
+        // nodes_to_restore = eles.filter("node[max_corr >= " + $(this).val() + "], edge[correlation >= " + $(this).val() + "][correlation <= -" + $(this).val() + "]")
+        // nodes_to_restore.restore()
+        
+        // edges_to_restore = eles.filter("edge[correlation >= " + $(this).val() + "][correlation <= -" + $(this).val() + "]")
+        // edges_to_restore.restore()
+        
+        //cy.$("node[max_corr >= " + $(this).val() + "]").restore();
+        //cy.$("edge[correlation >= " + $(this).val() + "][correlation <= -" + $(this).val() + "]").restore();
+        
+        cy.$("node[max_corr < " + $(this).val() + "]").remove(); 
+        cy.$("edge[correlation < " + $(this).val() + "][correlation > -" + $(this).val() + "]").remove();
+
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  });
+        
+    });
+    
+    $('#reset_graph').click(function() {
+        eles.restore() 
+        $('#slide').val(0)
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  });
+    });
+    
+    $('select[name=focus_select]').change(function() {
+        focus_trait = $(this).val()
+
+        eles.restore()
+        cy.$('edge[source != "' + focus_trait + '"][target != "' + focus_trait + '"]').remove()
+
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  });
+    });
+    
+    $('select[name=layout_select]').change(function() {
+        layout_type = $(this).val()
+        console.log("LAYOUT:", layout_type)
+        cy.layout({ name: layout_type,
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  });
+    });
+    
+    $("a#image_link").click(function(e) {
+      var pngData = cy.png();
+
+      $(this).attr('href', pngData);
+      $(this).attr('download', 'network_graph.png');
+      
+      console.log("TESTING:", image_link)
+      
+    });
+
+    
+};
+
+
diff --git a/gn2/wqflask/static/new/javascript/curvechart.js b/gn2/wqflask/static/new/javascript/curvechart.js
new file mode 100644
index 00000000..48bf6bf3
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/curvechart.js
@@ -0,0 +1,353 @@
+// Generated by CoffeeScript 1.8.0
+var curvechart;
+
+curvechart = function() {
+  var axispos, chart, commonX, curvesSelect, height, margin, nxticks, nyticks, rectcolor, rotate_ylab, strokecolor, strokecolorhilit, strokewidth, strokewidthhilit, title, titlepos, width, xlab, xlim, xscale, xticks, ylab, ylim, yscale, yticks;
+  width = 800;
+  height = 500;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  axispos = {
+    xtitle: 25,
+    ytitle: 30,
+    xlabel: 5,
+    ylabel: 5
+  };
+  titlepos = 20;
+  xlim = null;
+  ylim = null;
+  nxticks = 5;
+  xticks = null;
+  nyticks = 5;
+  yticks = null;
+  rectcolor = "#e6e6e6";
+  strokecolor = null;
+  strokecolorhilit = null;
+  strokewidth = 2;
+  strokewidthhilit = 2;
+  title = "";
+  xlab = "X";
+  ylab = "Y";
+  rotate_ylab = null;
+  yscale = d3.scale.linear();
+  xscale = d3.scale.linear();
+  curvesSelect = null;
+  commonX = true;
+  chart = function(selection) {
+    return selection.each(function(data) {
+      var curve, curves, g, gEnter, group, i, indID, indtip, j, lastpoint, ngroup, points, pointsg, svg, titlegrp, tmp, v, xaxis, xrange, xs, yaxis, yrange, ys, _i, _j, _len, _ref, _ref1, _ref2, _ref3, _results;
+      indID = (_ref = data != null ? data.indID : void 0) != null ? _ref : null;
+      indID = indID != null ? indID : (function() {
+        _results = [];
+        for (var _i = 1, _ref1 = data.data.length; 1 <= _ref1 ? _i <= _ref1 : _i >= _ref1; 1 <= _ref1 ? _i++ : _i--){ _results.push(_i); }
+        return _results;
+      }).apply(this);
+      group = (_ref2 = data != null ? data.group : void 0) != null ? _ref2 : (function() {
+        var _results1;
+        _results1 = [];
+        for (i in data.data) {
+          _results1.push(1);
+        }
+        return _results1;
+      })();
+      ngroup = d3.max(group);
+      group = (function() {
+        var _j, _len, _results1;
+        _results1 = [];
+        for (_j = 0, _len = group.length; _j < _len; _j++) {
+          g = group[_j];
+          _results1.push(g - 1);
+        }
+        return _results1;
+      })();
+      strokecolor = strokecolor != null ? strokecolor : selectGroupColors(ngroup, "pastel");
+      strokecolor = expand2vector(strokecolor, ngroup);
+      strokecolorhilit = strokecolorhilit != null ? strokecolorhilit : selectGroupColors(ngroup, "dark");
+      strokecolorhilit = expand2vector(strokecolorhilit, ngroup);
+      if (commonX) {
+        data = (function() {
+          var _results1;
+          _results1 = [];
+          for (i in data.data) {
+            _results1.push({
+              x: data.x,
+              y: data.data[i]
+            });
+          }
+          return _results1;
+        })();
+      } else {
+        data = data.data;
+      }
+      xlim = xlim != null ? xlim : d3.extent(pullVarAsArray(data, "x"));
+      ylim = ylim != null ? ylim : d3.extent(pullVarAsArray(data, "y"));
+      for (i in data) {
+        tmp = data[i];
+        data[i] = [];
+        for (j in tmp.x) {
+          if (!((tmp.x[j] == null) || (tmp.y[j] == null))) {
+            data[i].push({
+              x: tmp.x[j],
+              y: tmp.y[j]
+            });
+          }
+        }
+      }
+      svg = d3.select(this).selectAll("svg").data([data]);
+      gEnter = svg.enter().append("svg").append("g");
+      svg.attr("width", width + margin.left + margin.right).attr("height", height + margin.top + margin.bottom);
+      g = svg.select("g");
+      g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", height).attr("width", width).attr("fill", rectcolor).attr("stroke", "none");
+      xrange = [margin.left + margin.inner, margin.left + width - margin.inner];
+      yrange = [margin.top + height - margin.inner, margin.top + margin.inner];
+      xscale.domain(xlim).range(xrange);
+      yscale.domain(ylim).range(yrange);
+      xs = d3.scale.linear().domain(xlim).range(xrange);
+      ys = d3.scale.linear().domain(ylim).range(yrange);
+      yticks = yticks != null ? yticks : ys.ticks(nyticks);
+      xticks = xticks != null ? xticks : xs.ticks(nxticks);
+      titlegrp = g.append("g").attr("class", "title").append("text").attr("x", margin.left + width / 2).attr("y", margin.top - titlepos).text(title);
+      xaxis = g.append("g").attr("class", "x axis");
+      xaxis.selectAll("empty").data(xticks).enter().append("line").attr("x1", function(d) {
+        return xscale(d);
+      }).attr("x2", function(d) {
+        return xscale(d);
+      }).attr("y1", margin.top).attr("y2", margin.top + height).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
+      xaxis.selectAll("empty").data(xticks).enter().append("text").attr("x", function(d) {
+        return xscale(d);
+      }).attr("y", margin.top + height + axispos.xlabel).text(function(d) {
+        return formatAxis(xticks)(d);
+      });
+      xaxis.append("text").attr("class", "title").attr("x", margin.left + width / 2).attr("y", margin.top + height + axispos.xtitle).text(xlab);
+      rotate_ylab = rotate_ylab != null ? rotate_ylab : ylab.length > 1;
+      yaxis = g.append("g").attr("class", "y axis");
+      yaxis.selectAll("empty").data(yticks).enter().append("line").attr("y1", function(d) {
+        return yscale(d);
+      }).attr("y2", function(d) {
+        return yscale(d);
+      }).attr("x1", margin.left).attr("x2", margin.left + width).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
+      yaxis.selectAll("empty").data(yticks).enter().append("text").attr("y", function(d) {
+        return yscale(d);
+      }).attr("x", margin.left - axispos.ylabel).text(function(d) {
+        return formatAxis(yticks)(d);
+      });
+      yaxis.append("text").attr("class", "title").attr("y", margin.top + height / 2).attr("x", margin.left - axispos.ytitle).text(ylab).attr("transform", rotate_ylab ? "rotate(270," + (margin.left - axispos.ytitle) + "," + (margin.top + height / 2) + ")" : "");
+      indtip = d3.tip().attr('class', 'd3-tip').html(function(d) {
+        return indID[d];
+      }).direction('e').offset([0, 10]);
+      svg.call(indtip);
+      curve = d3.svg.line().x(function(d) {
+        return xscale(d.x);
+      }).y(function(d) {
+        return yscale(d.y);
+      });
+      curves = g.append("g").attr("id", "curves");
+      curvesSelect = curves.selectAll("empty").data(d3.range(data.length)).enter().append("path").datum(function(d) {
+        return data[d];
+      }).attr("d", curve).attr("class", function(d, i) {
+        return "path" + i;
+      }).attr("fill", "none").attr("stroke", function(d, i) {
+        return strokecolor[group[i]];
+      }).attr("stroke-width", strokewidth).on("mouseover.panel", function(d, i) {
+        var circle;
+        d3.select(this).attr("stroke", strokecolorhilit[group[i]]).moveToFront();
+        circle = d3.select("circle#hiddenpoint" + i);
+        return indtip.show(i, circle.node());
+      }).on("mouseout.panel", function(d, i) {
+        d3.select(this).attr("stroke", strokecolor[group[i]]).moveToBack();
+        return indtip.hide();
+      });
+      lastpoint = (function() {
+        var _results1;
+        _results1 = [];
+        for (i in data) {
+          _results1.push({
+            x: null,
+            y: null
+          });
+        }
+        return _results1;
+      })();
+      for (i in data) {
+        _ref3 = data[i];
+        for (_j = 0, _len = _ref3.length; _j < _len; _j++) {
+          v = _ref3[_j];
+          if ((v.x != null) && (v.y != null)) {
+            lastpoint[i] = v;
+          }
+        }
+      }
+      pointsg = g.append("g").attr("id", "invisiblepoints");
+      points = pointsg.selectAll("empty").data(lastpoint).enter().append("circle").attr("id", function(d, i) {
+        return "hiddenpoint" + i;
+      }).attr("cx", function(d) {
+        return xscale(d.x);
+      }).attr("cy", function(d) {
+        return yscale(d.y);
+      }).attr("r", 1).attr("opacity", 0);
+      return g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", height).attr("width", width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+    });
+  };
+  chart.width = function(value) {
+    if (!arguments.length) {
+      return width;
+    }
+    width = value;
+    return chart;
+  };
+  chart.height = function(value) {
+    if (!arguments.length) {
+      return height;
+    }
+    height = value;
+    return chart;
+  };
+  chart.margin = function(value) {
+    if (!arguments.length) {
+      return margin;
+    }
+    margin = value;
+    return chart;
+  };
+  chart.axispos = function(value) {
+    if (!arguments.length) {
+      return axispos;
+    }
+    axispos = value;
+    return chart;
+  };
+  chart.titlepos = function(value) {
+    if (!arguments.length) {
+      return titlepos;
+    }
+    titlepos;
+    return chart;
+  };
+  chart.xlim = function(value) {
+    if (!arguments.length) {
+      return xlim;
+    }
+    xlim = value;
+    return chart;
+  };
+  chart.nxticks = function(value) {
+    if (!arguments.length) {
+      return nxticks;
+    }
+    nxticks = value;
+    return chart;
+  };
+  chart.xticks = function(value) {
+    if (!arguments.length) {
+      return xticks;
+    }
+    xticks = value;
+    return chart;
+  };
+  chart.ylim = function(value) {
+    if (!arguments.length) {
+      return ylim;
+    }
+    ylim = value;
+    return chart;
+  };
+  chart.nyticks = function(value) {
+    if (!arguments.length) {
+      return nyticks;
+    }
+    nyticks = value;
+    return chart;
+  };
+  chart.yticks = function(value) {
+    if (!arguments.length) {
+      return yticks;
+    }
+    yticks = value;
+    return chart;
+  };
+  chart.rectcolor = function(value) {
+    if (!arguments.length) {
+      return rectcolor;
+    }
+    rectcolor = value;
+    return chart;
+  };
+  chart.strokecolor = function(value) {
+    if (!arguments.length) {
+      return strokecolor;
+    }
+    strokecolor = value;
+    return chart;
+  };
+  chart.strokecolorhilit = function(value) {
+    if (!arguments.length) {
+      return strokecolorhilit;
+    }
+    strokecolorhilit = value;
+    return chart;
+  };
+  chart.strokewidth = function(value) {
+    if (!arguments.length) {
+      return strokewidth;
+    }
+    strokewidth = value;
+    return chart;
+  };
+  chart.strokewidthhilit = function(value) {
+    if (!arguments.length) {
+      return strokewidthhilit;
+    }
+    strokewidthhilit = value;
+    return chart;
+  };
+  chart.commonX = function(value) {
+    if (!arguments.length) {
+      return commonX;
+    }
+    commonX = value;
+    return chart;
+  };
+  chart.title = function(value) {
+    if (!arguments.length) {
+      return title;
+    }
+    title = value;
+    return chart;
+  };
+  chart.xlab = function(value) {
+    if (!arguments.length) {
+      return xlab;
+    }
+    xlab = value;
+    return chart;
+  };
+  chart.ylab = function(value) {
+    if (!arguments.length) {
+      return ylab;
+    }
+    ylab = value;
+    return chart;
+  };
+  chart.rotate_ylab = function(value) {
+    if (!arguments.length) {
+      return rotate_ylab;
+    }
+    rotate_ylab = value;
+    return chart;
+  };
+  chart.yscale = function() {
+    return yscale;
+  };
+  chart.xscale = function() {
+    return xscale;
+  };
+  chart.curvesSelect = function() {
+    return curvesSelect;
+  };
+  return chart;
+};
diff --git a/gn2/wqflask/static/new/javascript/d3panels.min.js b/gn2/wqflask/static/new/javascript/d3panels.min.js
new file mode 100644
index 00000000..dfc10643
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/d3panels.min.js
@@ -0,0 +1 @@
+!function(){var d3panels={version:"1.7.1"};"use strict";d3panels.formatAxis=function(d){var extra_digits=arguments.length>1&&arguments[1]!==undefined?arguments[1]:0;var gap,ndig;if(d[0]!=null){gap=d[1]-d[0]}else if(d.length>2){gap=d[2]-d[1]}else{gap=d[1]}ndig=Math.floor(d3panels.log10(Math.abs(gap)));if(ndig>0){ndig=0}ndig=Math.abs(ndig)+extra_digits;return function(val){if(val!=null&&val!=="NA"){return d3.format("."+ndig+"f")(val)}return"NA"}};d3panels.unique=function(x){var k,len,output,v;output={};for(k=0,len=x.length;k<len;k++){v=x[k];if(v!=null){output[v]=v}}output=function(){var results;results=[];for(v in output){results.push(output[v])}return results}();return d3panels.forceAsArray(output)};d3panels.pullVarAsArray=function(data,variable){var i,results;results=[];for(i in data){results.push(data[i][variable])}return results};d3panels.reorgByChr=function(uniquechr,chr,vector){var c,i,k,len,result;if(chr.length!==vector.length){d3panels.displayError("reorgByChr: chr.length ("+chr.length+") != vector.length ("+vector.length+")")}result={};for(i=k=0,len=uniquechr.length;k<len;i=++k){c=uniquechr[i];result[c]=function(){var results;results=[];for(i in vector){if(chr[i]===c){results.push(vector[i])}}return results}()}return result};d3panels.reorgLodData=function(data){var i;data.posByChr=d3panels.reorgByChr(data.chrname,data.chr,data.pos);data.lodByChr=d3panels.reorgByChr(data.chrname,data.chr,data.lod);if(data.poslabel!=null){data.poslabelByChr=d3panels.reorgByChr(data.chrname,data.chr,data.poslabel)}if(data.marker!=null){data.markerinfo=function(){var results;results=[];for(i in data.marker){if(data.marker[i]!==""){results.push({name:data.marker[i],chr:data.chr[i],pos:data.pos[i],lod:data.lod[i]})}}return results}()}return data};d3panels.calc_chrscales=function(plot_width,left_margin,gap,chr,start,end){var reverse=arguments.length>6&&arguments[6]!==undefined?arguments[6]:false;var chr_end_pixels,chr_length,chr_start_pixels,domain,i,k,n_chr,range,ref,right,tot_chr_length,tot_pixels,xscale;n_chr=chr.length;chr_length=function(){var results;results=[];for(i in end){results.push(end[i]-start[i])}return results}();tot_chr_length=chr_length.reduce(function(t,s){return t+s});tot_pixels=plot_width-gap*n_chr;chr_start_pixels=[left_margin+gap/2];chr_end_pixels=[left_margin+gap/2+tot_pixels/tot_chr_length*chr_length[0]];for(i=k=1,ref=n_chr-1;1<=ref?k<=ref:k>=ref;i=1<=ref?++k:--k){chr_start_pixels.push(chr_end_pixels[i-1]+gap);chr_end_pixels.push(chr_start_pixels[i]+tot_pixels/tot_chr_length*chr_length[i])}right=plot_width+left_margin*2;xscale={};for(i in chr){domain=[start[i],end[i]];range=[chr_start_pixels[i],chr_end_pixels[i]];if(reverse){domain.reverse();range=[right-range[1],right-range[0]]}xscale[chr[i]]=d3.scaleLinear().domain(domain).range(range)}return xscale};d3panels.selectGroupColors=function(ngroup,palette){var cat20,pastel1,pastel20,set1;if(ngroup===0){return[]}set1=["#e41a1c","#377eb8","#4daf4a","#984ea3","#ff7f00","#ffff33","#a65628","#f781bf","#999999"];pastel1=["#fbb4ae","#b3cde3","#ccebc5","#decbe4","#fed9a6","#ffffcc","#e5d8bd","#fddaec","#f2f2f2"];cat20=["#1f77b4","#aec7e8","#ff7f0e","#ffbb78","#2ca02c","#98df8a","#d62728","#ff9896","#9467bd","#c5b0d5","#8c564b","#c49c94","#e377c2","#f7b6d2","#7f7f7f","#c7c7c7","#bcbd22","#dbdb8d","#17becf","#9edae5"];pastel20=["#8fc7f4","#fed7f8","#ffbf8e","#fffbb8","#8ce08c","#d8ffca","#f68788","#ffd8d6","#d4a7fd","#f5f0f5","#cc968b","#f4dcd4","#f3b7f2","#f7f6f2","#bfbfbf","#f7f7f7","#fcfd82","#fbfbcd","#87feff","#defaf5"];if(palette==="dark"){if(ngroup===1){return["slateblue"]}if(ngroup===2){return["MediumVioletRed","slateblue"]}if(ngroup===3){return["MediumVioletRed","MediumSeaGreen","slateblue"]}if(ngroup<=9){return set1.slice(0,ngroup)}return cat20.slice(0,ngroup)}else{if(ngroup===1){return["#bebebe"]}if(ngroup===2){return["lightpink","lightblue"]}if(ngroup<=9){return pastel1.slice(0,ngroup)}return pastel20.slice(0,ngroup)}};d3panels.expand2vector=function(input,n){var i;if(input==null){return input}if(Array.isArray(input)&&input.length>=n){return input}if(!Array.isArray(input)){input=[input]}if(input.length>1&&n>1){input=function(){var results;results=[];for(i in d3.range(n)){results.push(input[i%input.length])}return results}()}if(input.length===1&&n>1){input=function(){var results;results=[];for(i in d3.range(n)){results.push(input[0])}return results}()}return input};d3panels.median=function(x){var n,xv;if(x==null){return null}x=function(){var k,len,results;results=[];for(k=0,len=x.length;k<len;k++){xv=x[k];if(xv!=null){results.push(xv)}}return results}();n=x.length;if(!(n>0)){return null}x.sort(function(a,b){return a-b});if(n%2===1){return x[(n-1)/2]}return(x[n/2]+x[n/2-1])/2};d3panels.pad_vector=function(x){var pad=arguments.length>1&&arguments[1]!==undefined?arguments[1]:null;if(pad==null){return[x[0]-(x[1]-x[0])].concat(x).concat([x[x.length-1]+(x[x.length-1]-x[x.length-2])])}return[x[0]-pad].concat(x).concat(x[x.length-1]+pad)};d3panels.calc_midpoints=function(x){var i,k,ref,results;results=[];for(i=k=0,ref=x.length-2;0<=ref?k<=ref:k>=ref;i=0<=ref?++k:--k){results.push((x[i]+x[i+1])/2)}return results};d3panels.calc_cell_rect=function(cells,xmid,ymid){var bottom,cell,k,left,len,results,right,top;results=[];for(k=0,len=cells.length;k<len;k++){cell=cells[k];left=xmid[cell.xindex];right=xmid[1+cell.xindex];top=ymid[cell.yindex];bottom=ymid[1+cell.yindex];cell.left=d3.min([left,right]);cell.width=Math.abs(right-left);cell.top=d3.min([top,bottom]);results.push(cell.height=Math.abs(bottom-top))}return results};d3panels.calc_chrcell_rect=function(cells,xmid,ymid){var bottom,cell,k,left,len,results,right,top;results=[];for(k=0,len=cells.length;k<len;k++){cell=cells[k];left=xmid[cell.chr][cell.posindex];right=xmid[cell.chr][1+cell.posindex];top=ymid[cell.lodindex];bottom=ymid[1+cell.lodindex];cell.left=d3.min([left,right]);cell.width=Math.abs(right-left);cell.top=d3.min([top,bottom]);results.push(cell.height=Math.abs(bottom-top))}return results};d3panels.calc_2dchrcell_rect=function(cells,xmid,ymid){var bottom,cell,k,left,len,results,right,top;results=[];for(k=0,len=cells.length;k<len;k++){cell=cells[k];left=xmid[cell.chrx][cell.xindexByChr];right=xmid[cell.chrx][1+cell.xindexByChr];top=ymid[cell.chry][cell.yindexByChr];bottom=ymid[cell.chry][1+cell.yindexByChr];cell.left=d3.min([left,right]);cell.width=Math.abs(right-left);cell.top=d3.min([top,bottom]);results.push(cell.height=Math.abs(bottom-top))}return results};d3panels.maxdiff=function(x){var d,i,k,ref,result;if(x.length<2){return null}result=x[1]-x[0];if(x.length<3){return result}for(i=k=2,ref=x.length;2<=ref?k<ref:k>ref;i=2<=ref?++k:--k){d=x[i]-x[i-1];if(d>result){result=d}}return result};d3panels.matrixMin=function(mat){var i,j,result;result=mat[0][0];for(i in mat){for(j in mat[i]){if(!(result!=null)||result>mat[i][j]&&mat[i][j]!=null){result=mat[i][j]}}}return result};d3panels.matrixMax=function(mat){var i,j,result;result=mat[0][0];for(i in mat){for(j in mat[i]){if(!(result!=null)||result<mat[i][j]&&mat[i][j]!=null){result=mat[i][j]}}}return result};d3panels.matrixMaxAbs=function(mat){var i,j,result;result=Math.abs(mat[0][0]);for(i in mat){for(j in mat[i]){if(!(result!=null)||result<Math.abs(mat[i][j])&&mat[i][j]!=null){result=Math.abs(mat[i][j])}}}return result};d3panels.matrixExtent=function(mat){return[d3panels.matrixMin(mat),d3panels.matrixMax(mat)]};d3panels.forceAsArray=function(x){if(x==null){return x}if(Array.isArray(x)){return x}return[x]};d3panels.missing2null=function(vec){var missingvalues=arguments.length>1&&arguments[1]!==undefined?arguments[1]:["NA",""];return vec.map(function(value){if(missingvalues.indexOf(value)>-1){return null}else{return value}})};d3panels.displayError=function(message){var divid=arguments.length>1&&arguments[1]!==undefined?arguments[1]:null;var div;div="div.error";if(divid!=null){div+="#"+divid}if(d3.select(div).empty()){d3.select("body").insert("div",":first-child").attr("class","error")}return d3.select(div).append("p").text(message)};d3panels.sumArray=function(vec){var x;vec=function(){var k,len,results;results=[];for(k=0,len=vec.length;k<len;k++){x=vec[k];if(x!=null){results.push(x)}}return results}();if(!(vec.length>0)){return null}return vec.reduce(function(a,b){return a*1+b*1})};d3panels.calc_crosstab=function(data){var col,cs,i,k,l,ncol,nrow,ref,ref1,result,row,rs;nrow=data.ycat.length;ncol=data.xcat.length;result=function(){var k,ref,results;results=[];for(row=k=0,ref=nrow;0<=ref?k<=ref:k>=ref;row=0<=ref?++k:--k){results.push(function(){var l,ref1,results1;results1=[];for(col=l=0,ref1=ncol;0<=ref1?l<=ref1:l>=ref1;col=0<=ref1?++l:--l){results1.push(0)}return results1}())}return results}();for(i in data.x){result[data.y[i]][data.x[i]]+=1}rs=d3panels.rowSums(result);cs=d3panels.colSums(result);for(i=k=0,ref=ncol;0<=ref?k<ref:k>ref;i=0<=ref?++k:--k){result[nrow][i]=cs[i]}for(i=l=0,ref1=nrow;0<=ref1?l<ref1:l>ref1;i=0<=ref1?++l:--l){result[i][ncol]=rs[i]}result[nrow][ncol]=d3panels.sumArray(rs);return result};d3panels.rowSums=function(mat){var k,len,results,x;results=[];for(k=0,len=mat.length;k<len;k++){x=mat[k];results.push(d3panels.sumArray(x))}return results};d3panels.transpose=function(mat){var i,j,k,ref,results;results=[];for(j=k=0,ref=mat[0].length;0<=ref?k<ref:k>ref;j=0<=ref?++k:--k){results.push(function(){var l,ref1,results1;results1=[];for(i=l=0,ref1=mat.length;0<=ref1?l<ref1:l>ref1;i=0<=ref1?++l:--l){results1.push(mat[i][j])}return results1}())}return results};d3panels.colSums=function(mat){return d3panels.rowSums(d3panels.transpose(mat))};d3panels.log2=function(x){if(x==null){return x}return Math.log(x)/Math.log(2)};d3panels.log10=function(x){if(x==null){return x}return Math.log(x)/Math.log(10)};d3panels.abs=function(x){if(x==null){return x}return Math.abs(x)};d3panels.mean_by_group=function(g,y){var i,means,n;means={};n={};for(i in g){if(n[g[i]]!=null){if(y[i]!=null){means[g[i]]+=y[i]}if(y[i]!=null){n[g[i]]+=1}}else{if(y[i]!=null){means[g[i]]=y[i]}if(y[i]!=null){n[g[i]]=1}}}for(i in means){means[i]/=n[i]}return means};d3panels.sd_by_group=function(g,y){var dev,i,means,n,sds;means=d3panels.mean_by_group(g,y);sds={};n={};for(i in g){dev=y[i]-means[g[i]];if(n[g[i]]!=null){if(y[i]!=null){sds[g[i]]+=dev*dev}if(y[i]!=null){n[g[i]]+=1}}else{if(y[i]!=null){sds[g[i]]=dev*dev}if(y[i]!=null){n[g[i]]=1}}}for(i in sds){sds[i]=n[i]<2?null:Math.sqrt(sds[i]/(n[i]-1))}return sds};d3panels.count_groups=function(g,y){var i,n;n={};for(i in g){if(n[g[i]]!=null){if(y[i]!=null){n[g[i]]+=1}}else{if(y[i]!=null){n[g[i]]=1}}}return n};d3panels.ci_by_group=function(g,y){var m=arguments.length>2&&arguments[2]!==undefined?arguments[2]:2;var ci,dev,i,means,n,sds;means=d3panels.mean_by_group(g,y);sds={};n={};for(i in g){dev=y[i]-means[g[i]];if(n[g[i]]!=null){if(y[i]!=null){sds[g[i]]+=dev*dev}if(y[i]!=null){n[g[i]]+=1}}else{if(y[i]!=null){sds[g[i]]=dev*dev}if(y[i]!=null){n[g[i]]=1}}}for(i in sds){sds[i]=n[i]<2?null:Math.sqrt(sds[i]/(n[i]-1))}ci={};for(i in means){ci[i]={mean:means[i],low:n[i]>0?means[i]-m*sds[i]/Math.sqrt(n[i]):means[i],high:n[i]>0?means[i]+m*sds[i]/Math.sqrt(n[i]):means[i]}}return ci};d3panels.pad_ylim=function(ylim){var p=arguments.length>1&&arguments[1]!==undefined?arguments[1]:.025;var d;d=ylim[1]-ylim[0];return[ylim[0]-d*p,ylim[1]+d*p]};d3panels.add_chrname_start_end=function(data){var c,i,k,l,len,len1,ref,ref1,these_pos;if(data.chrname==null){data.chrname=d3panels.unique(data.chr)}data.chrname=d3panels.forceAsArray(data.chrname);if(data.chrstart==null){data.chrstart=[];ref=data.chrname;for(k=0,len=ref.length;k<len;k++){c=ref[k];these_pos=function(){var results;results=[];for(i in data.chr){if(data.chr[i]===c){results.push(data.pos[i])}}return results}();data.chrstart.push(d3.min(these_pos))}}if(data.chrend==null){data.chrend=[];ref1=data.chrname;for(l=0,len1=ref1.length;l<len1;l++){c=ref1[l];these_pos=function(){var results;results=[];for(i in data.chr){if(data.chr[i]===c){results.push(data.pos[i])}}return results}();data.chrend.push(d3.max(these_pos))}}data.start=d3panels.forceAsArray(data.start);data.end=d3panels.forceAsArray(data.end);return data};d3panels.calc_breaks=function(number,low,high){var d,i,results;if(low>=high){d3panels.displayError("calc_breaks: should have low < high");if(low>high){var _ref=[high,low];low=_ref[0];high=_ref[1]}if(low===high){low-=.5;high+=.5}}if(number<2){d3panels.displayError("calc_breaks: number should be >= 2");number=2}d=(high-low)/(number-1);results=[];for(i in d3.range(number)){results.push(low+d*i)}return results};d3panels.calc_freq=function(values,breaks){var return_counts=arguments.length>2&&arguments[2]!==undefined?arguments[2]:false;var br,i,k,len,n,ref,result,v,z;v=values.slice(0);v.sort(function(a,b){return+a-b});br=breaks.slice(0);br.sort(function(a,b){return+a-b});br[0]-=1e-6;br[br.length-1]+=1e-6;result=function(){var k,len,ref,results;ref=d3.range(br.length-1);results=[];for(k=0,len=ref.length;k<len;k++){i=ref[k];results.push(0)}return results}();n=v.length;v=function(){var k,len,results;results=[];for(k=0,len=v.length;k<len;k++){z=v[k];if(z>br[0]&&z<br[br.length-1]){results.push(z)}}return results}();if(v.length<n){d3panels.displayError("calc_freq: values out of range of breaks")}n=v.length;ref=d3.range(br.length-1);for(k=0,len=ref.length;k<len;k++){i=ref[k];result[i]=function(){var l,len1,results;results=[];for(l=0,len1=v.length;l<len1;l++){z=v[l];if(z>=br[i]&&z<br[i+1]){results.push(z)}}return results}().length;if(!return_counts){result[i]/=n*(br[i+1]-br[i])}}return result};d3panels.calc_hist_path=function(freq,breaks){var i,result;if(freq.length!==breaks.length-1){d3panels.displayError("freq.length ("+freq.length+") should be breaks.length - 1 ("+(breaks.length-1)+")")}result=[{x:breaks[0],y:0}];for(i in freq){result.push({x:breaks[i],y:freq[i]});result.push({x:breaks[+i+1],y:freq[i]})}result.push({x:breaks[breaks.length-1],y:0});return result};d3panels.index_of_nearest=function(d,vec){var abs_diff;abs_diff=vec.map(function(val){return Math.abs(val-d)});return abs_diff.indexOf(d3.min(abs_diff))};d3panels.check_listarg_v_default=function(arg,defaults){var key;for(key in defaults){if(arg[key]==null){arg[key]=defaults[key]}}return arg};d3panels.object_position=function(object){var obj,x,y;obj=object.node().getBoundingClientRect();x=obj.left/2+obj.right/2;y=obj.top/2+obj.bottom/2;return{x:x,y:y}};"use strict";d3panels.lod2dheatmap=function(chartOpts){var cellSelect,cells,celltip,chart,chrGap,colors,equalCells,height,hilitcolor,margin,nullcolor,oneAtTop,ref,ref1,ref10,ref11,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,svg,tipclass,width,xscale,yscale,zlim,zscale,zthresh;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:800;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:40,right:40,bottom:60};chrGap=(ref3=chartOpts!=null?chartOpts.chrGap:void 0)!=null?ref3:6;equalCells=(ref4=chartOpts!=null?chartOpts.equalCells:void 0)!=null?ref4:false;oneAtTop=(ref5=chartOpts!=null?chartOpts.oneAtTop:void 0)!=null?ref5:false;colors=(ref6=chartOpts!=null?chartOpts.colors:void 0)!=null?ref6:["slateblue","white","crimson"];nullcolor=(ref7=chartOpts!=null?chartOpts.nullcolor:void 0)!=null?ref7:"#e6e6e6";zlim=(ref8=chartOpts!=null?chartOpts.zlim:void 0)!=null?ref8:null;zthresh=(ref9=chartOpts!=null?chartOpts.zthresh:void 0)!=null?ref9:null;hilitcolor=(ref10=chartOpts!=null?chartOpts.hilitcolor:void 0)!=null?ref10:"black";tipclass=(ref11=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref11:"tooltip";xscale=null;yscale=null;zscale=null;celltip=null;cells=null;svg=null;cellSelect=null;chart=function chart(selection,data){var cellg,chr,i,indexWithinChr,j,k,l,len,len1,len2,m,myframe,n_pos,posByChr,ref12,ref13,ref14,tooltipfunc,x,xmid_scaled,y,ymid_scaled,zmax,zmin;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:60});if(data.chr==null){d3panels.displayError("lod2dheatmap: data.chr is missing")}if(data.pos==null){d3panels.displayError("lod2dheatmap: data.pos is missing")}if(data.lod==null){d3panels.displayError("lod2dheatmap: data.lod is missing")}n_pos=data.chr.length;if(data.pos.length!==n_pos){d3panels.displayError("lod2dheatmap: data.pos.length ("+data.pos.length+") != data.chr.length ("+n_pos+")")}if(data.lod.length!==n_pos){d3panels.displayError("lod2dheatmap: data.lod.length ("+data.lod.length+") != data.chr.length ("+n_pos+")")}for(i in data.lod){if(data.lod[i].length!==n_pos){d3panels.displayError("lod2dheatmap: data.lod["+i+"].length ("+data.lod[i].length+") != data.chr.length ("+n_pos+")")}}if(data.poslabel!=null){if(data.poslabel.length!==n_pos){d3panels.displayError("lod2dheatmap: data.poslabel.length ("+data.poslabel.length+") != data.chr.length ("+n_pos+")")}}else{data.poslabel=function(){var results;results=[];for(i in data.chr){results.push(data.chr[i]+"@"+d3panels.formatAxis(data.pos)(data.pos[i]))}return results}()}if(data.chrname==null){data.chrname=d3panels.unique(data.chr)}data.chrname=d3panels.forceAsArray(data.chrname);if(equalCells){data.pos=[];ref12=data.chrname;for(k=0,len=ref12.length;k<len;k++){chr=ref12[k];data.pos=data.pos.concat(function(){var results;results=[];for(i in data.chr){if(data.chr[i]===chr){results.push(+i)}}return results}())}}data=d3panels.add_chrname_start_end(data);if(equalCells){chrGap=(width-margin.left-margin.right-2*data.chrname.length)/data.chr.length+2}chartOpts.chrGap=chrGap;chartOpts.width=width;chartOpts.height=height;chartOpts.margin=margin;myframe=d3panels.chr2dpanelframe(chartOpts);myframe(selection,{chr:data.chrname,start:data.chrstart,end:data.chrend});svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();posByChr=d3panels.reorgByChr(data.chrname,data.chr,data.pos);xmid_scaled={};ymid_scaled={};ref13=data.chrname;for(l=0,len1=ref13.length;l<len1;l++){chr=ref13[l];xmid_scaled[chr]=d3panels.calc_midpoints(d3panels.pad_vector(function(){var len2,m,ref14,results;ref14=posByChr[chr];results=[];for(m=0,len2=ref14.length;m<len2;m++){x=ref14[m];results.push(xscale[chr](x))}return results}(),chrGap-2));ymid_scaled[chr]=d3panels.calc_midpoints(d3panels.pad_vector(function(){var len2,m,ref14,results;ref14=posByChr[chr];results=[];for(m=0,len2=ref14.length;m<len2;m++){y=ref14[m];results.push(yscale[chr](y))}return results}(),oneAtTop?chrGap-2:2-chrGap))}zmin=d3panels.matrixMin(data.lod);zmax=d3panels.matrixMaxAbs(data.lod);zlim=zlim!=null?zlim:[-zmax,0,zmax];if(zlim.length!==colors.length){d3panels.displayError("lod2dheatmap: zlim.length ("+zlim.length+") != colors.length ("+colors.length+")")}zscale=d3.scaleLinear().domain(zlim).range(colors);zthresh=zthresh!=null?zthresh:zmin-1;indexWithinChr=[];ref14=data.chrname;for(m=0,len2=ref14.length;m<len2;m++){chr=ref14[m];indexWithinChr=indexWithinChr.concat(function(){var results;results=[];for(i in posByChr[chr]){results.push(+i)}return results}())}cells=[];for(i in data.chr){for(j in data.chr){if(Math.abs(data.lod[i][j])>=zthresh){cells.push({lod:data.lod[i][j],chrx:data.chr[i],chry:data.chr[j],poslabelx:data.poslabel[i],poslabely:data.poslabel[j],xindex:i,yindex:j,xindexByChr:indexWithinChr[i],yindexByChr:indexWithinChr[j]})}}}d3panels.calc_2dchrcell_rect(cells,xmid_scaled,ymid_scaled);cellg=svg.append("g").attr("id","cells");cellSelect=cellg.selectAll("empty").data(cells).enter().append("rect").attr("x",function(d){return d.left}).attr("y",function(d){return d.top}).attr("width",function(d){return d.width}).attr("height",function(d){return d.height}).attr("class",function(d,i){return"cell"+i}).attr("fill",function(d){if(d.lod!=null){return zscale(d.lod)}else{return nullcolor}}).attr("stroke","none").attr("stroke-width","1").on("mouseover",function(d){return d3.select(this).attr("stroke",hilitcolor).raise()}).on("mouseout",function(){return d3.select(this).attr("stroke","none")});tooltipfunc=function tooltipfunc(d){var z;z=d3.format(".2f")(Math.abs(d.lod));return"("+d.poslabelx+","+d.poslabely+") &rarr; "+z};return celltip=d3panels.tooltip_create(d3.select("body"),cellg.selectAll("rect"),{tipclass:tipclass},tooltipfunc)};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.zscale=function(){return zscale};chart.cells=function(){return cellSelect};chart.celltip=function(){return celltip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(celltip);return null};return chart};"use strict";d3panels.panelframe=function(chartOpts){var axispos,box,boxcolor,boxwidth,chart,height,margin,nxticks,nyticks,plot_height,plot_width,rectcolor,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref17,ref18,ref19,ref2,ref20,ref21,ref22,ref23,ref24,ref25,ref26,ref3,ref4,ref5,ref6,ref7,ref8,ref9,rotate_ylab,svg,title,titlepos,v_over_h,width,xNA,xNA_size,xlab,xlabels,xlim,xlineOpts,xlines,xscale,xscale_wnull,xticklab,xticks,yNA,yNA_size,ylab,ylabels,ylim,ylineOpts,ylines,yscale,yscale_wnull,yticklab,yticks;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:500;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:40,right:40,bottom:40,inner:3};axispos=(ref3=chartOpts!=null?chartOpts.axispos:void 0)!=null?ref3:{xtitle:25,ytitle:45,xlabel:5,ylabel:5};titlepos=(ref4=chartOpts!=null?chartOpts.titlepos:void 0)!=null?ref4:20;title=(ref5=chartOpts!=null?chartOpts.title:void 0)!=null?ref5:"";xlab=(ref6=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref6:"X";ylab=(ref7=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref7:"Y";rotate_ylab=(ref8=chartOpts!=null?chartOpts.rotate_ylab:void 0)!=null?ref8:null;xNA=(ref9=chartOpts!=null?chartOpts.xNA:void 0)!=null?ref9:false;yNA=(ref10=chartOpts!=null?chartOpts.yNA:void 0)!=null?ref10:false;xNA_size=(ref11=chartOpts!=null?chartOpts.xNA_size:void 0)!=null?ref11:{width:20,gap:10};yNA_size=(ref12=chartOpts!=null?chartOpts.yNA_size:void 0)!=null?ref12:{width:20,gap:10};xlim=(ref13=chartOpts!=null?chartOpts.xlim:void 0)!=null?ref13:[0,1];ylim=(ref14=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref14:[0,1];nxticks=(ref15=chartOpts!=null?chartOpts.nxticks:void 0)!=null?ref15:5;xticks=(ref16=chartOpts!=null?chartOpts.xticks:void 0)!=null?ref16:null;xticklab=(ref17=chartOpts!=null?chartOpts.xticklab:void 0)!=null?ref17:null;nyticks=(ref18=chartOpts!=null?chartOpts.nyticks:void 0)!=null?ref18:5;yticks=(ref19=chartOpts!=null?chartOpts.yticks:void 0)!=null?ref19:null;yticklab=(ref20=chartOpts!=null?chartOpts.yticklab:void 0)!=null?ref20:null;rectcolor=(ref21=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref21:"#e6e6e6";boxcolor=(ref22=chartOpts!=null?chartOpts.boxcolor:void 0)!=null?ref22:"black";boxwidth=(ref23=chartOpts!=null?chartOpts.boxwidth:void 0)!=null?ref23:2;xlineOpts=(ref24=chartOpts!=null?chartOpts.xlineOpts:void 0)!=null?ref24:{color:"white",width:2};ylineOpts=(ref25=chartOpts!=null?chartOpts.ylineOpts:void 0)!=null?ref25:{color:"white",width:2};v_over_h=(ref26=chartOpts!=null?chartOpts.v_over_h:void 0)!=null?ref26:false;xscale=null;yscale=null;xNA=xNA;yNA=yNA;xlines=null;ylines=null;xlabels=null;ylabels=null;plot_width=null;plot_height=null;box=null;svg=null;xscale_wnull=null;yscale_wnull=null;chart=function chart(selection){var boxes,boxes2include,d,g,i,inner_height,inner_width,xNA_xpos,xaxis,xrange,yNA_ypos,yaxis,ylabpos_x,ylabpos_y,yrange;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:40,inner:3});axispos=d3panels.check_listarg_v_default(axispos,{xtitle:25,ytitle:45,xlabel:5,ylabel:5});xNA_size=d3panels.check_listarg_v_default(xNA_size,{width:20,gap:10});yNA_size=d3panels.check_listarg_v_default(yNA_size,{width:20,gap:10});xlineOpts=d3panels.check_listarg_v_default(xlineOpts,{color:"white",width:2});ylineOpts=d3panels.check_listarg_v_default(ylineOpts,{color:"white",width:2});svg=selection.append("svg");svg.attr("width",width).attr("height",height).attr("class","d3panels");g=svg.append("g").attr("id","frame");if(!xNA){xNA_size={width:0,gap:0}}if(!yNA){yNA_size={width:0,gap:0}}plot_width=width-(margin.left+margin.right);plot_height=height-(margin.top+margin.bottom);inner_width=width-(margin.right+margin.left+xNA_size.width+xNA_size.gap);inner_height=height-(margin.top+margin.bottom+yNA_size.width+yNA_size.gap);boxes={left:[margin.left+xNA_size.width+xNA_size.gap,margin.left,margin.left,margin.left+xNA_size.width+xNA_size.gap],width:[inner_width,xNA_size.width,xNA_size.width,inner_width],top:[margin.top,margin.top,height-(margin.bottom+yNA_size.width),height-(margin.bottom+yNA_size.width)],height:[inner_height,inner_height,yNA_size.width,yNA_size.width]};xNA_xpos=xNA?margin.left+xNA_size.width/2:-5e4;yNA_ypos=yNA?height-margin.bottom-yNA_size.width/2:-5e4;xrange=[boxes.left[0],boxes.left[0]+boxes.width[0]];yrange=[boxes.top[0]+boxes.height[0],boxes.top[0]];for(i in boxes.left){if(boxes.width[i]>0&&boxes.height[i]>0){g.append("rect").attr("x",boxes.left[i]).attr("y",boxes.top[i]).attr("height",boxes.height[i]).attr("width",boxes.width[i]).attr("fill",rectcolor).attr("stroke","none").attr("shape-rendering","crispEdges")}}g.append("g").attr("class","title").append("text").text(title).attr("x",(width-margin.left-margin.right)/2+margin.left).attr("y",titlepos);rotate_ylab=rotate_ylab!=null?rotate_ylab:ylab.length>1;if(v_over_h){yaxis=g.append("g").attr("class","y axis");xaxis=g.append("g").attr("class","x axis")}else{xaxis=g.append("g").attr("class","x axis");yaxis=g.append("g").attr("class","y axis")}xaxis.append("text").attr("class","title").text(xlab).attr("x",(width-margin.left-margin.right)/2+margin.left).attr("y",plot_height+margin.top+axispos.xtitle);ylabpos_y=(height-margin.top-margin.bottom)/2+margin.top;ylabpos_x=margin.left-axispos.ytitle;yaxis.append("text").attr("class","title").text(ylab).attr("y",ylabpos_y).attr("x",ylabpos_x).attr("transform",rotate_ylab?"rotate(270,"+ylabpos_x+","+ylabpos_y+")":"");xscale=d3.scaleLinear().domain(xlim).range([xrange[0]+margin.inner,xrange[1]-margin.inner]);yscale=d3.scaleLinear().domain(ylim).range([yrange[0]-margin.inner,yrange[1]+margin.inner]);xscale_wnull=function xscale_wnull(val){if(val==null){return xNA_xpos}return xscale(val)};yscale_wnull=function yscale_wnull(val){if(val==null){return yNA_ypos}return yscale(val)};xticks=xticks!=null?xticks:xscale.ticks(nxticks);if(xticklab!=null&&xticklab.length!==xticks.length){d3panels.displayError("panelframe: xticklab.length ("+xticklab.length+") != xticks.length ("+xticks.length+")")}if(!(xticklab!=null&&xticklab.length===xticks.length)){xticklab=function(){var j,len,results;results=[];for(j=0,len=xticks.length;j<len;j++){d=xticks[j];results.push(d3panels.formatAxis(xticks)(d))}return results}()}if(xNA){xticks=[null].concat(xticks)}if(xNA){xticklab=["NA"].concat(xticklab)}yticks=yticks!=null?yticks:yscale.ticks(nyticks);if(yticklab!=null&&yticklab.length!==yticks.length){d3panels.displayError("panelframe: yticklab.length ("+yticklab.length+") != yticks.length ("+yticks.length+")")}if(!(yticklab!=null&&yticklab.length===yticks.length)){yticklab=function(){var j,len,results;results=[];for(j=0,len=yticks.length;j<len;j++){d=yticks[j];results.push(d3panels.formatAxis(yticks)(d))}return results}()}if(yNA){yticks=[null].concat(yticks)}if(yNA){yticklab=["NA"].concat(yticklab)}ylines=yaxis.append("g").attr("id","ylines").selectAll("empty").data(yticks.concat(yticks)).enter().append("line").attr("y1",function(d){return yscale_wnull(d)}).attr("y2",function(d){return yscale_wnull(d)}).attr("x1",function(d,i){if(i<yticks.length){return xrange[0]}return margin.left}).attr("x2",function(d,i){if(i<yticks.length){return xrange[1]}return margin.left+xNA_size.width}).attr("fill","none").attr("stroke",ylineOpts.color).attr("stroke-width",ylineOpts.width).attr("shape-rendering","crispEdges").style("pointer-events","none");xlines=xaxis.append("g").attr("id","xlines").selectAll("empty").data(xticks.concat(xticks)).enter().append("line").attr("x1",function(d){return xscale_wnull(d)}).attr("x2",function(d){return xscale_wnull(d)}).attr("y1",function(d,i){if(i<xticks.length){return yrange[0]}return height-margin.bottom}).attr("y2",function(d,i){if(i<xticks.length){return yrange[1]}return height-margin.bottom-yNA_size.width}).attr("fill","none").attr("stroke",xlineOpts.color).attr("stroke-width",xlineOpts.width).attr("shape-rendering","crispEdges").style("pointer-events","none");xlabels=xaxis.append("g").attr("id","xlabels").selectAll("empty").data(xticklab).enter().append("text").attr("x",function(d,i){return xscale_wnull(xticks[i])}).attr("y",height-margin.bottom+axispos.xlabel).text(function(d){return d});ylabels=yaxis.append("g").attr("id","ylabels").selectAll("empty").data(yticklab).enter().append("text").attr("y",function(d,i){return yscale_wnull(yticks[i])}).attr("x",margin.left-axispos.ylabel).text(function(d){return d});boxes2include=function(){var results;results=[];for(i in boxes.left){if(boxes.width[i]>0&&boxes.height[i]>0){results.push(i)}}return results}();box=svg.append("g").attr("id","box");return box.selectAll("empty").data(boxes2include).enter().append("rect").attr("x",function(i){return boxes.left[i]}).attr("y",function(i){return boxes.top[i]}).attr("height",function(i){return boxes.height[i]}).attr("width",function(i){return boxes.width[i]}).attr("fill","none").attr("stroke",boxcolor).attr("stroke-width",boxwidth).attr("shape-rendering","crispEdges")};chart.xscale=function(){return xscale_wnull};chart.yscale=function(){return yscale_wnull};chart.xNA=function(){return xNA};chart.yNA=function(){return yNA};chart.xlines=function(){return xlines};chart.ylines=function(){return ylines};chart.xlabels=function(){return xlabels};chart.ylabels=function(){return ylabels};chart.plot_width=function(){return plot_width};chart.plot_height=function(){return plot_height};chart.width=function(){return width};chart.height=function(){return height};chart.margin=function(){return margin};chart.box=function(){return box};chart.svg=function(){return svg};chart.remove=function(){svg.remove();return null};return chart};"use strict";d3panels.chrpanelframe=function(chartOpts){var altrectcolor,axispos,box,boxcolor,boxwidth,chart,chrGap,chrSelect,chrlinecolor,chrlines,chrlinewidth,height,horizontal,margin,nyticks,rectcolor,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref17,ref18,ref19,ref2,ref20,ref21,ref22,ref3,ref4,ref5,ref6,ref7,ref8,ref9,rotate_ylab,svg,title,titlepos,width,xlab,xlabels,xlineOpts,xscale,ylab,ylabels,ylim,ylineOpts,yscale,yticklab,yticks;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:500;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:40,right:40,bottom:40};axispos=(ref3=chartOpts!=null?chartOpts.axispos:void 0)!=null?ref3:{xtitle:25,ytitle:45,xlabel:5,ylabel:5};titlepos=(ref4=chartOpts!=null?chartOpts.titlepos:void 0)!=null?ref4:20;title=(ref5=chartOpts!=null?chartOpts.title:void 0)!=null?ref5:"";xlab=(ref6=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref6:null;ylab=(ref7=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref7:"LOD score";rotate_ylab=(ref8=chartOpts!=null?chartOpts.rotate_ylab:void 0)!=null?ref8:null;ylim=(ref9=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref9:[0,1];nyticks=(ref10=chartOpts!=null?chartOpts.nyticks:void 0)!=null?ref10:5;yticks=(ref11=chartOpts!=null?chartOpts.yticks:void 0)!=null?ref11:null;yticklab=(ref12=chartOpts!=null?chartOpts.yticklab:void 0)!=null?ref12:null;rectcolor=(ref13=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref13:"#e6e6e6";altrectcolor=(ref14=chartOpts!=null?chartOpts.altrectcolor:void 0)!=null?ref14:"#d4d4d4";chrlinecolor=(ref15=chartOpts!=null?chartOpts.chrlinecolor:void 0)!=null?ref15:"";chrlinewidth=(ref16=chartOpts!=null?chartOpts.chrlinewidth:void 0)!=null?ref16:2;boxcolor=(ref17=chartOpts!=null?chartOpts.boxcolor:void 0)!=null?ref17:"black";boxwidth=(ref18=chartOpts!=null?chartOpts.boxwidth:void 0)!=null?ref18:2;xlineOpts=(ref19=chartOpts!=null?chartOpts.xlineOpts:void 0)!=null?ref19:{color:"#d4d4d4",width:2};ylineOpts=(ref20=chartOpts!=null?chartOpts.ylineOpts:void 0)!=null?ref20:{color:"white",width:2};chrGap=(ref21=chartOpts!=null?chartOpts.chrGap:void 0)!=null?ref21:6;horizontal=(ref22=chartOpts.horizontal)!=null?ref22:false;xscale=null;yscale=null;xlabels=null;ylabels=null;chrSelect=null;chrlines=null;box=null;svg=null;chart=function chart(selection,data){var c,d,g,plot_height,plot_width,thechr,xaxis,xlines,xticks,yaxis,ylabpos_x,ylabpos_y,ylines;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:60});axispos=d3panels.check_listarg_v_default(axispos,{xtitle:25,ytitle:45,xlabel:5,ylabel:5});xlineOpts=d3panels.check_listarg_v_default(xlineOpts,{color:"white",width:2});ylineOpts=d3panels.check_listarg_v_default(ylineOpts,{color:"white",width:2});if(data.chr==null){d3panels.displayError("chrpanelframe: data.chr is missing")}if(data.end==null){d3panels.displayError("chrpanelframe: data.end is missing")}if(xlab==null){xlab=data.chr.length===1?"Position":"Chromosome"}svg=selection.append("svg");svg.attr("width",width).attr("height",height).attr("class","d3panels");g=svg.append("g").attr("id","frame");plot_width=width-(margin.left+margin.right);plot_height=height-(margin.top+margin.bottom);if(!(data!=null?data.start:void 0)){data.start=function(){var j,len,ref23,results;ref23=data.chr;results=[];for(j=0,len=ref23.length;j<len;j++){c=ref23[j];results.push(0)}return results}()}if(data.chr.length!==data.start.length){d3panels.displayError("chrpanelframe: data.start.length ("+data.start.length+") != data.chr.length ("+data.chr.length+")")}if(data.chr.length!==data.end.length){d3panels.displayError("chrpanelframe: data.end.length ("+data.end.length+") != data.chr.length ("+data.chr.length+")")}if(horizontal){xscale=d3panels.calc_chrscales(plot_height,margin.top,chrGap,data.chr,data.start,data.end);yscale=d3.scaleLinear().domain(ylim.reverse()).range([plot_width+margin.left,margin.left])}else{xscale=d3panels.calc_chrscales(plot_width,margin.left,chrGap,data.chr,data.start,data.end);yscale=d3.scaleLinear().domain(ylim).range([plot_height+margin.top,margin.top])}g.append("rect").attr("x",margin.left).attr("width",plot_width).attr("y",margin.top).attr("height",plot_height).attr("fill",rectcolor).attr("shape-rendering","crispEdges");if(altrectcolor!==""){chrSelect=g.append("g").selectAll("empty").data(data.chr).enter().append("rect").attr("x",function(d,i){if(horizontal){return margin.left}return xscale[d](data.start[i])-chrGap/2}).attr("width",function(d,i){if(horizontal){return plot_width}return xscale[d](data.end[i])-xscale[d](data.start[i])+chrGap}).attr("y",function(d,i){if(horizontal){return xscale[d](data.start[i])-chrGap/2}return margin.top}).attr("height",function(d,i){if(horizontal){return xscale[d](data.end[i])-xscale[d](data.start[i])+chrGap}return plot_height}).attr("fill",function(d,i){if(i%2===0){return rectcolor}return altrectcolor}).attr("shape-rendering","crispEdges")}g.append("g").attr("class","title").append("text").text(title).attr("x",(width-margin.left-margin.right)/2+margin.left).attr("y",titlepos);if(horizontal){rotate_ylab=rotate_ylab!=null?rotate_ylab:xlab.length>1}else{rotate_ylab=rotate_ylab!=null?rotate_ylab:ylab.length>1}xaxis=g.append("g").attr("class",function(){if(horizontal){return"y axis"}return"x axis"});yaxis=g.append("g").attr("class",function(){if(horizontal){return"x axis"}return"y axis"});xaxis.append("text").attr("class","title").text(function(){if(horizontal){return ylab}return xlab}).attr("x",(width-margin.left-margin.right)/2+margin.left).attr("y",plot_height+margin.top+axispos.xtitle);ylabpos_y=(height-margin.top-margin.bottom)/2+margin.top;ylabpos_x=margin.left-axispos.ytitle;yaxis.append("text").attr("class","title").text(function(){if(horizontal){return xlab}return ylab}).attr("y",ylabpos_y).attr("x",ylabpos_x).attr("transform",rotate_ylab?"rotate(270,"+ylabpos_x+","+ylabpos_y+")":"");if(data.chr.length>1){xlabels=xaxis.append("g").attr("id","xlabels").selectAll("empty").data(data.chr).enter().append("text").attr("x",function(d,i){if(horizontal){return margin.left-axispos.ylabel}return(xscale[d](data.start[i])+xscale[d](data.end[i]))/2}).attr("y",function(d,i){if(horizontal){return(xscale[d](data.start[i])+xscale[d](data.end[i]))/2}return height-margin.bottom+axispos.xlabel}).text(function(d){return d})}else{thechr=data.chr[0];xticks=xscale[thechr].ticks(5);xlabels=xaxis.append("g").attr("id","xlabels").selectAll("empty").data(xticks).enter().append("text").attr("x",function(d){if(horizontal){return margin.left-axispos.ylabel}return xscale[thechr](d)}).attr("y",function(d,i){if(horizontal){return xscale[thechr](d)}return height-margin.bottom+axispos.xlabel}).text(function(d){return d});xlines=xaxis.append("g").attr("id","xlines").selectAll("empty").data(xticks).enter().append("line").attr("x1",function(d){if(horizontal){return margin.left}return xscale[thechr](d)}).attr("x2",function(d){if(horizontal){return margin.left+plot_width}return xscale[thechr](d)}).attr("y1",function(d,i){if(horizontal){return xscale[thechr](d)}return margin.top}).attr("y2",function(d,i){if(horizontal){return xscale[thechr](d)}return plot_height+margin.top}).attr("fill","none").attr("stroke",xlineOpts.color).attr("stroke-width",xlineOpts.width).attr("shape-rendering","crispEdges").style("pointer-events","none")}yticks=yticks!=null?yticks:yscale.ticks(nyticks);if(yticklab!=null&&yticklab.length!==yticks.length){displayError("chrpanelframe: yticklab.length ("+yticklab.length+") != yticks.length ("+yticks.length+")")}if(!(yticklab!=null&&yticklab.length===yticks.length)){yticklab=function(){var j,len,results;results=[];for(j=0,len=yticks.length;j<len;j++){d=yticks[j];results.push(d3panels.formatAxis(yticks)(d))}return results}()}ylines=yaxis.append("g").attr("id","ylines").selectAll("empty").data(yticks.concat(yticks)).enter().append("line").attr("y1",function(d){if(horizontal){return margin.top}return yscale(d)}).attr("y2",function(d){if(horizontal){return margin.top+plot_height}return yscale(d)}).attr("x1",function(d,i){if(horizontal){return yscale(d)}return margin.left}).attr("x2",function(d,i){if(horizontal){return yscale(d)}return plot_width+margin.left}).attr("fill","none").attr("stroke",ylineOpts.color).attr("stroke-width",ylineOpts.width).attr("shape-rendering","crispEdges").style("pointer-events","none");ylabels=yaxis.append("g").attr("id","ylabels").selectAll("empty").data(yticklab).enter().append("text").attr("y",function(d,i){if(horizontal){return height-margin.bottom+axispos.xlabel}return yscale(yticks[i])}).attr("x",function(d,i){if(horizontal){return yscale(yticks[i])}return margin.left-axispos.ylabel}).text(function(d){return d});if(chrlinecolor!==""&&data.chr.length>1){chrlines=svg.append("g").attr("id","chrlines");chrlines.selectAll("empty").data(data.chr.slice(0,+(data.chr.length-2)+1||9e9)).enter().append("line").attr("x1",function(d,i){if(horizontal){return margin.left}return xscale[d](data.end[i])+chrGap/2}).attr("x2",function(d,i){if(horizontal){return margin.left+plot_width}return xscale[d](data.end[i])+chrGap/2}).attr("y1",function(d,i){if(horizontal){return xscale[d](data.end[i])+chrGap/2}return margin.top}).attr("y2",function(d,i){if(horizontal){return xscale[d](data.end[i])+chrGap/2}return margin.top+plot_height}).attr("stroke",chrlinecolor).attr("stroke-width",chrlinewidth).attr("shape-rendering","crispEdges")}return box=svg.append("rect").attr("class","box").attr("x",margin.left).attr("y",margin.top).attr("height",plot_height).attr("width",plot_width).attr("fill","none").attr("stroke",boxcolor).attr("stroke-width",boxwidth).attr("shape-rendering","crispEdges")};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.xlabels=function(){return xlabels};chart.ylabels=function(){return ylabels};chart.chrSelect=function(){return chrSelect};chart.chrlines=function(){return chrlines};chart.plot_width=function(){return plot_width};chart.plot_height=function(){return plot_height};chart.width=function(){return width};chart.height=function(){return height};chart.margin=function(){return margin};chart.box=function(){return box};chart.svg=function(){return svg};chart.remove=function(){svg.remove();return null};return chart};"use strict";d3panels.chr2dpanelframe=function(chartOpts){var altrectcolor,axispos,box,boxcolor,boxwidth,chart,chrGap,chrSelect,chrlinecolor,chrlines,chrlinewidth,height,margin,oneAtTop,rectcolor,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,rotate_ylab,svg,title,titlepos,width,xlab,xlabels,xscale,ylab,ylabels,yscale;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:800;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:40,right:40,bottom:60};axispos=(ref3=chartOpts!=null?chartOpts.axispos:void 0)!=null?ref3:{xtitle:25,ytitle:45,xlabel:5,ylabel:5};titlepos=(ref4=chartOpts!=null?chartOpts.titlepos:void 0)!=null?ref4:20;title=(ref5=chartOpts!=null?chartOpts.title:void 0)!=null?ref5:"";xlab=(ref6=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref6:"Chromosome";ylab=(ref7=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref7:"Chromosome";rotate_ylab=(ref8=chartOpts!=null?chartOpts.rotate_ylab:void 0)!=null?ref8:null;rectcolor=(ref9=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref9:"#e6e6e6";altrectcolor=(ref10=chartOpts!=null?chartOpts.altrectcolor:void 0)!=null?ref10:"#d4d4d4";chrlinecolor=(ref11=chartOpts!=null?chartOpts.chrlinecolor:void 0)!=null?ref11:"";chrlinewidth=(ref12=chartOpts!=null?chartOpts.chrlinewidth:void 0)!=null?ref12:2;boxcolor=(ref13=chartOpts!=null?chartOpts.boxcolor:void 0)!=null?ref13:"black";boxwidth=(ref14=chartOpts!=null?chartOpts.boxwidth:void 0)!=null?ref14:2;chrGap=(ref15=chartOpts!=null?chartOpts.chrGap:void 0)!=null?ref15:6;oneAtTop=(ref16=chartOpts!=null?chartOpts.oneAtTop:void 0)!=null?ref16:false;xscale=null;yscale=null;xlabels=null;ylabels=null;chrSelect=null;chrlines=null;box=null;svg=null;chart=function chart(selection,data){var c,chrRect,chrx,chry,g,j,k,len,len1,plot_height,plot_width,ref17,ref18,x,xaxis,y,yaxis,ylabpos_x,ylabpos_y;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:60});axispos=d3panels.check_listarg_v_default(axispos,{xtitle:25,ytitle:45,xlabel:5,ylabel:5});if(data.chr==null){d3panels.displayError("chr2dpanelframe: data.chr is missing")}if(data.end==null){d3panels.displayError("chr2dpanelframe: data.end is missing")}svg=selection.append("svg");svg.attr("width",width).attr("height",height).attr("class","d3panels");g=svg.append("g").attr("id","frame");plot_width=width-(margin.left+margin.right);plot_height=height-(margin.top+margin.bottom);if(!(data!=null?data.start:void 0)){data.start=function(){var j,len,ref17,results;ref17=data.chr;results=[];for(j=0,len=ref17.length;j<len;j++){c=ref17[j];results.push(0)}return results}()}if(data.chr.length!==data.start.length){d3panels.displayError("chr2dpanelframe: data.start.length ("+data.start.length+") != data.chr.length ("+data.chr.length+")")}if(data.chr.length!==data.end.length){d3panels.displayError("chr2dpanelframe: data.end.length ("+data.end.length+") != data.chr.length ("+data.chr.length+")")}xscale=d3panels.calc_chrscales(plot_width,margin.left,chrGap,data.chr,data.start,data.end);yscale=d3panels.calc_chrscales(plot_height,margin.top,chrGap,data.chr,data.start,data.end,!oneAtTop);g.append("rect").attr("x",margin.left).attr("width",plot_width).attr("y",margin.top).attr("height",plot_height).attr("fill",rectcolor).attr("shape-rendering","crispEdges");chrRect=[];ref17=data.chr;for(x=j=0,len=ref17.length;j<len;x=++j){chrx=ref17[x];ref18=data.chr;for(y=k=0,len1=ref18.length;k<len1;y=++k){chry=ref18[y];chrRect.push({chrx:chrx,xi:x,chry:chry,yi:y,odd:(x+y)%2})}}if(altrectcolor!==""){chrSelect=g.append("g").selectAll("empty").data(chrRect).enter().append("rect").attr("x",function(d){return xscale[d.chrx](data.start[d.xi])-chrGap/2}).attr("width",function(d){return xscale[d.chrx](data.end[d.xi])-xscale[d.chrx](data.start[d.xi])+chrGap}).attr("y",function(d){if(oneAtTop){return yscale[d.chry](data.start[d.yi])-chrGap/2}return yscale[d.chry](data.end[d.yi])-chrGap/2}).attr("height",function(d){if(oneAtTop){return yscale[d.chry](data.end[d.yi])-yscale[d.chry](data.start[d.yi])+chrGap}return yscale[d.chry](data.start[d.yi])-yscale[d.chry](data.end[d.yi])+chrGap}).attr("fill",function(d,i){if(!d.odd){return rectcolor}return altrectcolor}).attr("shape-rendering","crispEdges")}g.append("g").attr("class","title").append("text").text(title).attr("x",(width-margin.left-margin.right)/2+margin.left).attr("y",titlepos);rotate_ylab=rotate_ylab!=null?rotate_ylab:ylab.length>1;xaxis=g.append("g").attr("class","x axis");yaxis=g.append("g").attr("class","y axis");xaxis.append("text").attr("class","title").text(function(){return xlab}).attr("x",(width-margin.left-margin.right)/2+margin.left).attr("y",plot_height+margin.top+axispos.xtitle);ylabpos_y=(height-margin.top-margin.bottom)/2+margin.top;ylabpos_x=margin.left-axispos.ytitle;yaxis.append("text").attr("class","title").text(function(){return ylab}).attr("y",ylabpos_y).attr("x",ylabpos_x).attr("transform",rotate_ylab?"rotate(270,"+ylabpos_x+","+ylabpos_y+")":"");xlabels=xaxis.append("g").attr("id","xlabels").selectAll("empty").data(data.chr).enter().append("text").attr("x",function(d,i){return(xscale[d](data.start[i])+xscale[d](data.end[i]))/2}).attr("y",height-margin.bottom+axispos.xlabel).text(function(d){return d});ylabels=yaxis.append("g").attr("id","ylabels").selectAll("empty").data(data.chr).enter().append("text").attr("y",function(d,i){return(yscale[d](data.start[i])+yscale[d](data.end[i]))/2}).attr("x",margin.left-axispos.ylabel).text(function(d){return d});if(chrlinecolor!==""&&data.chr.length>1){chrlines=svg.append("g").attr("id","chrlines");chrlines.selectAll("empty").data(data.chr.slice(0,+(data.chr.length-2)+1||9e9)).enter().append("line").attr("x1",function(d,i){return xscale[d](data.end[i])+chrGap/2}).attr("x2",function(d,i){return xscale[d](data.end[i])+chrGap/2}).attr("y1",margin.top).attr("y2",margin.top+plot_height).attr("stroke",chrlinecolor).attr("stroke-width",chrlinewidth).attr("shape-rendering","crispEdges");chrlines.selectAll("empty").data(data.chr.slice(0,+(data.chr.length-2)+1||9e9)).enter().append("line").attr("y1",function(d,i){if(oneAtTop){return yscale[d](data.end[i])+chrGap/2}return yscale[d](data.end[i])-chrGap/2}).attr("y2",function(d,i){if(oneAtTop){return yscale[d](data.end[i])+chrGap/2}return yscale[d](data.end[i])-chrGap/2}).attr("x1",margin.left).attr("x2",margin.left+plot_width).attr("stroke",chrlinecolor).attr("stroke-width",chrlinewidth).attr("shape-rendering","crispEdges")}return box=svg.append("rect").attr("class","box").attr("x",margin.left).attr("y",margin.top).attr("height",plot_height).attr("width",plot_width).attr("fill","none").attr("stroke",boxcolor).attr("stroke-width",boxwidth).attr("shape-rendering","crispEdges")};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.xlabels=function(){return xlabels};chart.ylabels=function(){return ylabels};chart.chrSelect=function(){return chrSelect};chart.chrlines=function(){return chrlines};chart.plot_width=function(){return plot_width};chart.plot_height=function(){return plot_height};chart.width=function(){return width};chart.height=function(){return height};chart.margin=function(){return margin};chart.box=function(){return box};chart.svg=function(){return svg};chart.remove=function(){svg.remove();return null};return chart};"use strict";d3panels.cichart=function(chartOpts){var chart,horizontal,ref,ref1,ref10,ref11,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,segcolor,segments,segstrokewidth,segwidth,svg,tip,tipclass,v_over_h,vertsegcolor,xcatlabels,xlab,xlineOpts,xscale,ylab,ylim,yscale;if(chartOpts==null){chartOpts={}}xcatlabels=(ref=chartOpts!=null?chartOpts.xcatlabels:void 0)!=null?ref:null;segwidth=(ref1=chartOpts!=null?chartOpts.segwidth:void 0)!=null?ref1:.4;segcolor=(ref2=chartOpts!=null?chartOpts.segcolor:void 0)!=null?ref2:"slateblue";segstrokewidth=(ref3=chartOpts!=null?chartOpts.segstrokewidth:void 0)!=null?ref3:"3";vertsegcolor=(ref4=chartOpts!=null?chartOpts.vertsegcolor:void 0)!=null?ref4:"slateblue";xlab=(ref5=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref5:"Group";ylab=(ref6=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref6:"Response";ylim=(ref7=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref7:null;xlineOpts=(ref8=chartOpts!=null?chartOpts.xlineOpts:void 0)!=null?ref8:{color:"#CDCDCD",width:5};horizontal=(ref9=chartOpts!=null?chartOpts.horizontal:void 0)!=null?ref9:false;v_over_h=(ref10=chartOpts!=null?chartOpts.v_over_h:void 0)!=null?ref10:horizontal;tipclass=(ref11=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref11:"tooltip";xscale=null;yscale=null;segments=null;tip=null;svg=null;chart=function chart(selection,data){var direction,high,i,low,mean,myframe,ncat,segmentGroup,tipfunc,xlim,xticks,xval,yval;xlineOpts=d3panels.check_listarg_v_default(xlineOpts,{color:"#CDCDCD",width:5});if(data.mean==null){d3panels.displayError("cichart: data.mean is missing")}if(data.low==null){d3panels.displayError("cichart: data.low is missing")}if(data.high==null){d3panels.displayError("cichart: data.high is missing")}mean=data.mean;low=data.low;high=data.high;ncat=mean.length;if(ncat!==low.length){d3panels.displayError("cichart: low.length ["+low.length+"] != mean.length ["+ncat+"]")}if(ncat!==high.length){d3panels.displayError("cichart: high.length ["+high.length+"] != mean.length ["+ncat+"]")}xticks=function(){var results;results=[];for(i in mean){results.push(+i+1)}return results}();xcatlabels=xcatlabels!=null?xcatlabels:xticks;if(xcatlabels.length!==mean.length){d3panels.displayError("cichart: xcatlabels.length ["+xcatlabels.length+"] != mean.length ["+ncat+"]")}ylim=ylim!=null?ylim:d3panels.pad_ylim(d3.extent(low.concat(high)));xlim=[.5,mean.length+.5];segcolor=d3panels.expand2vector(d3panels.forceAsArray(segcolor),mean.length);vertsegcolor=d3panels.expand2vector(d3panels.forceAsArray(vertsegcolor),mean.length);if(horizontal){chartOpts.ylim=xlim.reverse();chartOpts.xlim=ylim;chartOpts.xlab=ylab;chartOpts.ylab=xlab;chartOpts.xlineOpts=chartOpts.ylineOpts;chartOpts.ylineOpts=xlineOpts;chartOpts.yNA=chartOpts.xNA;chartOpts.xNA=chartOpts.yNA;chartOpts.yticks=xticks;chartOpts.yticklab=xcatlabels;chartOpts.v_over_h=v_over_h}else{chartOpts.ylim=ylim;chartOpts.xlim=xlim;chartOpts.xlab=xlab;chartOpts.ylab=ylab;chartOpts.ylineOpts=chartOpts.ylineOpts;chartOpts.xlineOpts=xlineOpts;chartOpts.xticks=xticks;chartOpts.xticklab=xcatlabels;chartOpts.v_over_h=v_over_h}myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();segmentGroup=svg.append("g").attr("id","segments");segments=segmentGroup.selectAll("empty").data(low).enter().append("line").attr("x1",function(d,i){if(!horizontal){return xscale(i+1)}return xscale(d)}).attr("x2",function(d,i){if(!horizontal){return xscale(i+1)}return xscale(high[i])}).attr("y1",function(d,i){if(!horizontal){return yscale(d)}return yscale(i+1)}).attr("y2",function(d,i){if(!horizontal){return yscale(high[i])}return yscale(i+1)}).attr("fill","none").attr("stroke",function(d,i){return vertsegcolor[i]}).attr("stroke-width",segstrokewidth).attr("shape-rendering","crispEdges");yval=mean.concat(low,high);xval=function(){var results;results=[];for(i in yval){results.push(+(i%ncat)+1)}return results}();segments=segmentGroup.selectAll("empty").data(yval).enter().append("line").attr("x1",function(d,i){if(horizontal){return xscale(d)}else{if(i<ncat){return xscale(xval[i]-segwidth/2)}return xscale(xval[i]-segwidth/3)}}).attr("x2",function(d,i){if(horizontal){return xscale(d)}else{if(i<ncat){return xscale(xval[i]+segwidth/2)}return xscale(xval[i]+segwidth/3)}}).attr("y1",function(d,i){if(horizontal){if(i<ncat){return yscale(xval[i]-segwidth/2)}return yscale(xval[i]-segwidth/3)}else{return yscale(d)}}).attr("y2",function(d,i){if(horizontal){if(i<ncat){return yscale(xval[i]+segwidth/2)}return yscale(xval[i]+segwidth/3)}else{return yscale(d)}}).attr("fill","none").attr("stroke",function(d,i){return segcolor[i%mean.length]}).attr("stroke-width",segstrokewidth).attr("shape-rendering","crispEdges");direction=horizontal?"north":"east";tipfunc=function tipfunc(d,i){var f,index;index=i%mean.length;f=d3panels.formatAxis([low[index],mean[index]],1);return f(mean[index])+" ("+f(low[index])+" - "+f(high[index])+")"};tip=d3panels.tooltip_create(d3.select("body"),segments,{direction:direction,tipclass:tipclass},tipfunc);return myframe.box().raise()};chart.yscale=function(){return yscale};chart.xscale=function(){return xscale};chart.segments=function(){return segments};chart.tip=function(){return tip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(tip);return null};return chart};"use strict";d3panels.crosstab=function(chartOpts){var bordercolor,cellPad,chart,colrect,fontsize,height,hilitcolor,margin,rectcolor,ref,ref1,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,rowrect,svg,title,titlepos,width;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:600;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:300;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:80,right:40,bottom:20};cellPad=(ref3=chartOpts!=null?chartOpts.cellPad:void 0)!=null?ref3:null;titlepos=(ref4=chartOpts!=null?chartOpts.titlepos:void 0)!=null?ref4:50;title=(ref5=chartOpts!=null?chartOpts.title:void 0)!=null?ref5:"";fontsize=(ref6=chartOpts!=null?chartOpts.fontsize:void 0)!=null?ref6:null;rectcolor=(ref7=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref7:"#e6e6e6";hilitcolor=(ref8=chartOpts!=null?chartOpts.hilitcolor:void 0)!=null?ref8:"#e9cfec";bordercolor=(ref9=chartOpts!=null?chartOpts.bordercolor:void 0)!=null?ref9:"black";rowrect=null;colrect=null;svg=null;chart=function chart(selection,data){var borders,cell,cellHeight,cellWidth,cells,collab,denom,i,j,k,l,n,ncol,nrow,plot_height,plot_width,rect,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref17,rowlab,tab,titles,values,xscale,xv,yscale,yv;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:60});if(data.x==null){d3panels.displayError("crosstab: data.x is missing")}if(data.y==null){d3panels.displayError("crosstab: data.y is missing")}n=data.x.length;if(data.y.length!==n){d3panels.displayError("crosstab: data.x.length ["+data.x.length+"] != data.y.length ["+data.y.length+"]")}data.xcat=(ref10=data!=null?data.xcat:void 0)!=null?ref10:function(){var k,len,ref11,results;ref11=d3.range(d3.max(data.x));results=[];for(k=0,len=ref11.length;k<len;k++){xv=ref11[k];results.push(xv+1)}return results}();data.ycat=(ref11=data!=null?data.ycat:void 0)!=null?ref11:function(){var k,len,ref12,results;ref12=d3.range(d3.max(data.y));results=[];for(k=0,len=ref12.length;k<len;k++){yv=ref12[k];results.push(yv+1)}return results}();ncol=data.xcat.length;if(d3.max(data.x)>ncol||d3.min(data.x)<=0){d3panels.displayError("crosstab: data.x should be in range 1-"+ncol+" [was "+d3.min(data.x)+" - "+d3.max(data.x)+"]")}nrow=data.ycat.length;if(d3.max(data.y)>nrow||d3.min(data.y)<=0){d3panels.displayError("crosstab: data.y should be in range 1-"+nrow+" [was "+d3.min(data.y)+" - "+d3.max(data.y)+"]")}data.x=function(){var k,len,ref12,results;ref12=data.x;results=[];for(k=0,len=ref12.length;k<len;k++){xv=ref12[k];results.push(xv-1)}return results}();data.y=function(){var k,len,ref12,results;ref12=data.y;results=[];for(k=0,len=ref12.length;k<len;k++){yv=ref12[k];results.push(yv-1)}return results}();tab=d3panels.calc_crosstab(data);data.xlabel=(ref12=data!=null?data.xlabel:void 0)!=null?ref12:"";data.ylabel=(ref13=data!=null?data.ylabel:void 0)!=null?ref13:"";cells=[];for(i=k=0,ref14=nrow;0<=ref14?k<=ref14:k>=ref14;i=0<=ref14?++k:--k){for(j=l=0,ref15=ncol;0<=ref15?l<=ref15:l>=ref15;j=0<=ref15?++l:--l){cell={value:tab[i][j],row:i,col:j,shaded:false,rowpercent:"",colpercent:""};if(i<nrow-1&&(j<ncol-1||j===ncol)){cell.shaded=true}if(j<ncol-1&&(i<nrow-1||i===nrow)){cell.shaded=true}if(i<nrow-1){denom=tab[nrow][j]-tab[nrow-1][j];cell.colpercent=denom>0?Math.round(100*tab[i][j]/denom)+"%":"—"}else if(i===nrow-1){denom=tab[nrow][j];cell.colpercent=denom>0?"("+Math.round(100*tab[i][j]/denom)+"%)":"—"}else{cell.colpercent=cell.value}if(j<ncol-1){denom=tab[i][ncol]-tab[i][ncol-1];cell.rowpercent=denom>0?Math.round(100*tab[i][j]/denom)+"%":"—"}else if(j===ncol-1){denom=tab[i][ncol];cell.rowpercent=denom>0?"("+Math.round(100*tab[i][j]/denom)+"%)":"—"}else{cell.rowpercent=cell.value}cells.push(cell)}}plot_width=width-margin.left-margin.right;plot_height=height-margin.top-margin.bottom;cellWidth=plot_width/(ncol+2);cellHeight=plot_height/(nrow+2);fontsize=fontsize!=null?fontsize:cellHeight*.5;cellPad=cellPad!=null?cellPad:cellWidth*.1;xscale=d3.scaleBand().domain(function(){var results=[];for(var m=0,ref16=ncol+1;0<=ref16?m<=ref16:m>=ref16;0<=ref16?m++:m--){results.push(m)}return results}.apply(this)).range([margin.left,width-margin.right]);yscale=d3.scaleBand().domain(function(){var results=[];for(var m=0,ref17=nrow+1;0<=ref17?m<=ref17:m>=ref17;0<=ref17?m++:m--){results.push(m)}return results}.apply(this)).range([margin.top,height-margin.bottom]);svg=selection.append("svg").attr("width",width).attr("height",height).attr("class","d3panels");rect=svg.append("g").attr("id","value_rect");rect.selectAll("empty").data(cells).enter().append("rect").attr("x",function(d){return xscale(d.col+1)}).attr("y",function(d){return yscale(d.row+1)}).attr("width",cellWidth).attr("height",cellHeight).attr("fill",function(d){if(d.shaded){return rectcolor}else{return"none"}}).attr("stroke",function(d){if(d.shaded){return rectcolor}else{return"none"}}).attr("stroke-width",0).style("pointer-events","none").attr("shape-rendering","crispEdges");values=svg.append("g").attr("id","values");values.selectAll("empty").data(cells).enter().append("text").attr("x",function(d){return xscale(d.col+1)+cellWidth-cellPad}).attr("y",function(d){return yscale(d.row+1)+cellHeight/2}).text(function(d){return d.value}).attr("class",function(d){return"crosstab row"+d.row+" col"+d.col}).style("font-size",fontsize).style("pointer-events","none");colrect=svg.append("g").attr("id","colrect");colrect.selectAll("empty").data(data.xcat.concat("Total")).enter().append("rect").attr("x",function(d,i){return xscale(i+1)}).attr("y",yscale(0)).attr("width",cellWidth).attr("height",cellHeight).attr("fill","white").attr("stroke","white").attr("shape-rendering","crispEdges").on("mouseover",function(d,i){d3.select(this).attr("fill",hilitcolor).attr("stroke",hilitcolor);return values.selectAll(".col"+i).text(function(d){return d.colpercent})}).on("mouseout",function(d,i){d3.select(this).attr("fill","white").attr("stroke","white");return values.selectAll("text.col"+i).text(function(d){return d.value})});collab=svg.append("g").attr("id","collab");collab.selectAll("empty").data(data.xcat.concat("Total")).enter().append("text").attr("x",function(d,i){return xscale(i+1)+cellWidth-cellPad}).attr("y",yscale(0)+cellHeight/2).text(function(d){return d}).attr("class","crosstab").style("font-size",fontsize).style("pointer-events","none");rowrect=svg.append("g").attr("id","rowrect");rowrect.selectAll("empty").data(data.ycat.concat("Total")).enter().append("rect").attr("x",xscale(0)).attr("y",function(d,i){return yscale(i+1)}).attr("width",cellWidth).attr("height",cellHeight).attr("fill","white").attr("stroke","white").attr("shape-rendering","crispEdges").on("mouseover",function(d,i){d3.select(this).attr("fill",hilitcolor).attr("stroke",hilitcolor);return values.selectAll(".row"+i).text(function(d){return d.rowpercent})}).on("mouseout",function(d,i){d3.select(this).attr("fill","white").attr("stroke","white");return values.selectAll(".row"+i).text(function(d){return d.value})});rowlab=svg.append("g").attr("id","rowlab");rowlab.selectAll("empty").data(data.ycat.concat("Total")).enter().append("text").attr("x",xscale(0)+cellWidth-cellPad).attr("y",function(d,i){return yscale(i+1)+cellHeight/2}).text(function(d){return d}).attr("class","crosstab").style("font-size",fontsize).style("pointer-events","none");borders=svg.append("g").attr("id","borders");borders.append("rect").attr("x",xscale(1)).attr("y",yscale(1)).attr("width",cellWidth*ncol).attr("height",cellHeight*nrow).attr("fill","none").attr("stroke",bordercolor).attr("stroke-width",2).style("pointer-events","none").attr("shape-rendering","crispEdges");borders.append("rect").attr("x",xscale(ncol+1)).attr("y",yscale(nrow+1)).attr("width",cellWidth).attr("height",cellHeight).attr("fill","none").attr("stroke",bordercolor).attr("stroke-width",2).style("pointer-events","none").attr("shape-rendering","crispEdges");titles=svg.append("g").attr("id","titles");titles.append("text").attr("class","crosstabtitle").attr("x",margin.left+(ncol+1)*cellWidth/2).attr("y",margin.top-cellHeight/2).text(data.xlabel).style("font-size",fontsize).style("font-weight","bold");titles.append("text").attr("class","crosstab").attr("x",xscale(0)+cellWidth-cellPad).attr("y",yscale(0)+cellHeight/2).text(data.ylabel).style("font-size",fontsize).style("font-weight","bold");return titles.append("text").attr("class","crosstabtitle").attr("x",margin.left+(width-margin.left-margin.right)/2).attr("y",margin.top-titlepos).text(title).style("font-size",fontsize)};chart.rowrect=function(){return rowrect};chart.colrect=function(){return colrect};chart.svg=function(){return svg};chart.remove=function(){svg.remove();return null};return chart};"use strict";d3panels.curvechart=function(chartOpts){var chart,curves,indtip,linecolor,linecolorhilit,linewidth,linewidthhilit,ref,ref1,ref2,ref3,ref4,ref5,ref6,svg,tipclass,xlim,xscale,ylim,yscale;if(chartOpts==null){chartOpts={}}xlim=(ref=chartOpts!=null?chartOpts.xlim:void 0)!=null?ref:null;ylim=(ref1=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref1:null;linecolor=(ref2=chartOpts!=null?chartOpts.linecolor:void 0)!=null?ref2:null;linecolorhilit=(ref3=chartOpts!=null?chartOpts.linecolorhilit:void 0)!=null?ref3:null;linewidth=(ref4=chartOpts!=null?chartOpts.linewidth:void 0)!=null?ref4:2;linewidthhilit=(ref5=chartOpts!=null?chartOpts.linewidthhilit:void 0)!=null?ref5:2;tipclass=(ref6=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref6:"tooltip";xscale=null;yscale=null;curves=null;indtip=null;svg=null;chart=function chart(selection,data){var add_curves,i,j,myframe,n_ind,ref7,x,y;if(data.x==null){d3panels.displayError("curvechart: data.x is missing")}if(data.y==null){d3panels.displayError("curvechart: data.y is missing")}x=data.x;y=data.y;n_ind=y.length;if(x.length===1&&y.length>1){for(j=i=2,ref7=n_ind;2<=ref7?i<=ref7:i>=ref7;j=2<=ref7?++i:--i){x.push(x[0])}}if(x.length!==n_ind){d3panels.displayError("curvechart: data.x.length ("+x.length+") != data.y.length ("+n_ind+")")}xlim=xlim!=null?xlim:d3panels.matrixExtent(x);ylim=ylim!=null?ylim:d3panels.matrixExtent(y);chartOpts.xlim=xlim;chartOpts.ylim=ylim;chartOpts.xNA=false;chartOpts.yNA=false;myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();add_curves=d3panels.add_curves({linecolor:linecolor,linecolorhilit:linecolorhilit,linewidth:linewidth,linewidthhilit:linewidthhilit,tipclass:tipclass});add_curves(myframe,data);curves=add_curves.curves();indtip=add_curves.indtip();return myframe.box().raise()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.curves=function(){return curves};chart.indtip=function(){return indtip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(indtip);return null};return chart};"use strict";var indexOf=[].indexOf;d3panels.dotchart=function(chartOpts){var chart,horizontal,indtip,jitter,pointcolor,points,pointsize,pointstroke,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,svg,tipclass,v_over_h,xNA,xNA_size,xcategories,xcatlabels,xlab,xlineOpts,xscale,yNA,yNA_size,ylab,ylim,yscale;if(chartOpts==null){chartOpts={}}xcategories=(ref=chartOpts!=null?chartOpts.xcategories:void 0)!=null?ref:null;xcatlabels=(ref1=chartOpts!=null?chartOpts.xcatlabels:void 0)!=null?ref1:null;xNA=(ref2=chartOpts!=null?chartOpts.xNA:void 0)!=null?ref2:{handle:true,force:false};yNA=(ref3=chartOpts!=null?chartOpts.yNA:void 0)!=null?ref3:{handle:true,force:false};xNA_size=(ref4=chartOpts!=null?chartOpts.xNA_size:void 0)!=null?ref4:{width:20,gap:10};yNA_size=(ref5=chartOpts!=null?chartOpts.yNA_size:void 0)!=null?ref5:{width:20,gap:10};ylim=(ref6=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref6:null;xlab=(ref7=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref7:"Group";ylab=(ref8=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref8:"Response";xlineOpts=(ref9=chartOpts!=null?chartOpts.xlineOpts:void 0)!=null?ref9:{color:"#cdcdcd",width:5};pointcolor=(ref10=chartOpts!=null?chartOpts.pointcolor:void 0)!=null?ref10:null;pointstroke=(ref11=chartOpts!=null?chartOpts.pointstroke:void 0)!=null?ref11:"black";pointsize=(ref12=chartOpts!=null?chartOpts.pointsize:void 0)!=null?ref12:3;jitter=(ref13=chartOpts!=null?chartOpts.jitter:void 0)!=null?ref13:"beeswarm";tipclass=(ref14=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref14:"tooltip";horizontal=(ref15=chartOpts!=null?chartOpts.horizontal:void 0)!=null?ref15:false;v_over_h=(ref16=chartOpts!=null?chartOpts.v_over_h:void 0)!=null?ref16:horizontal;xscale=null;yscale=null;xNA=xNA;yNA=yNA;points=null;indtip=null;svg=null;chart=function chart(selection,data){var force,g,group,i,indID,jitter_width,myframe,ngroup,pointGroup,ref17,ref18,ref19,ref20,scaledPoints,u,x,xlim,xv,y;xNA=d3panels.check_listarg_v_default(xNA,{handle:true,force:false});yNA=d3panels.check_listarg_v_default(yNA,{handle:true,force:false});xNA_size=d3panels.check_listarg_v_default(xNA,{width:20,gap:10});yNA_size=d3panels.check_listarg_v_default(yNA,{width:20,gap:10});if(data.x==null){d3panels.displayError("dotchart: data.x is missing")}if(data.y==null){d3panels.displayError("dotchart: data.y is missing")}x=d3panels.missing2null(data.x);y=d3panels.missing2null(data.y);indID=(ref17=data!=null?data.indID:void 0)!=null?ref17:function(){var results=[];for(var j=1,ref18=x.length;1<=ref18?j<=ref18:j>=ref18;1<=ref18?j++:j--){results.push(j)}return results}.apply(this);if(x.length!==y.length){d3panels.displayError("dotchart: length(x) ["+x.length+"] != length(y) ["+y.length+"]")}if(indID.length!==x.length){d3panels.displayError("dotchart: length(indID) ["+indID.length+"] != length(x) ["+x.length+"]")}group=(ref19=data!=null?data.group:void 0)!=null?ref19:function(){var j,len,results;results=[];for(j=0,len=x.length;j<len;j++){i=x[j];results.push(1)}return results}();group=d3panels.expand2vector(group,x.length);ngroup=d3.max(group);group=function(){var j,len,results;results=[];for(j=0,len=group.length;j<len;j++){g=group[j];results.push(g!=null?g-1:g)}return results}();if(d3panels.sumArray(function(){var j,len,results;results=[];for(j=0,len=group.length;j<len;j++){g=group[j];results.push(g<0||g>ngroup-1)}return results}())>0){d3panels.displayError("dotchart: group values out of range");console.log("ngroup: "+ngroup);console.log("distinct groups: "+d3panels.unique(group))}if(group.length!==x.length){d3panels.displayError("dotchart: group.length ("+group.length+") != x.length ("+x.length+")")}pointcolor=pointcolor!=null?pointcolor:d3panels.selectGroupColors(ngroup,"dark");pointcolor=d3panels.expand2vector(pointcolor,ngroup);if(pointcolor.length<ngroup){d3panels.displayError("add_points: pointcolor.length ("+pointcolor.length+") < ngroup ("+ngroup+")")}xcategories=xcategories!=null?xcategories:d3panels.unique(x);xcategories=d3panels.forceAsArray(xcategories);xcatlabels=xcatlabels!=null?xcatlabels:xcategories;xcatlabels=d3panels.forceAsArray(xcatlabels);if(xcatlabels.length!==xcategories.length){d3panels.displayError("dotchart: xcatlabels.length ["+xcatlabels.length+"] != xcategories.length ["+xcategories.length+"]")}if(d3panels.sumArray(function(){var j,len,results;results=[];for(j=0,len=x.length;j<len;j++){xv=x[j];results.push(xv!=null&&!(indexOf.call(xcategories,xv)>=0))}return results}())>0){d3panels.displayError("dotchart: Some x values not in xcategories");console.log("xcategories:");console.log(xcategories);console.log("x:");console.log(x);for(i in x){if(x[i]!=null&&!(ref20=x[i],indexOf.call(xcategories,ref20)>=0)){x[i]=null}}}ylim=ylim!=null?ylim:d3panels.pad_ylim(d3.extent(y));xlim=[d3.min(xcategories)-.5,d3.max(xcategories)+.5];xNA.handle=xNA.force||xNA.handle&&!x.every(function(v){return v!=null});yNA.handle=yNA.force||yNA.handle&&!y.every(function(v){return v!=null});if(horizontal){chartOpts.ylim=xlim.reverse();chartOpts.xlim=ylim;chartOpts.xlab=ylab;chartOpts.ylab=xlab;chartOpts.xlineOpts=chartOpts.ylineOpts;chartOpts.ylineOpts=xlineOpts;chartOpts.yNA=xNA.handle;chartOpts.xNA=yNA.handle;chartOpts.xNA_size=yNA_size;chartOpts.yNA_size=xNA_size;chartOpts.yticks=xcategories;chartOpts.yticklab=xcatlabels;chartOpts.v_over_h=v_over_h}else{chartOpts.ylim=ylim;chartOpts.xlim=xlim;chartOpts.xlab=xlab;chartOpts.ylab=ylab;chartOpts.ylineOpts=chartOpts.ylineOpts;chartOpts.xlineOpts=xlineOpts;chartOpts.xNA=xNA.handle;chartOpts.yNA=yNA.handle;chartOpts.xNA_size=xNA_size;chartOpts.yNA_size=yNA_size;chartOpts.xticks=xcategories;chartOpts.xticklab=xcatlabels;chartOpts.v_over_h=v_over_h}myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();if(horizontal){scaledPoints=function(){var results;results=[];for(i in x){results.push({x:xscale(y[i]),y:yscale(x[i])})}return results}()}else{scaledPoints=function(){var results;results=[];for(i in x){results.push({x:xscale(x[i]),y:yscale(y[i])})}return results}()}pointGroup=svg.append("g").attr("id","points");points=pointGroup.selectAll("empty").data(scaledPoints).enter().append("circle").attr("class",function(d,i){return"pt"+i}).attr("r",pointsize).attr("fill",function(d,i){return pointcolor[group[i]]}).attr("stroke",pointstroke).attr("stroke-width","1").attr("cx",function(d){return d.x}).attr("cy",function(d){return d.y});indtip=d3panels.tooltip_create(d3.select("body"),points,{tipclass:tipclass},function(d,i){return indID[i]});if(jitter==="random"){jitter_width=.2;u=function(){var results;results=[];for(i in scaledPoints){results.push((Math.random()-.5)*jitter_width)}return results}();if(horizontal){points.attr("cy",function(d,i){if(x[i]!=null){return yscale(x[i]+u[i])}return yscale(x[i])+u[i]/jitter_width*xNA_size.width/2})}else{points.attr("cx",function(d,i){if(x[i]!=null){return xscale(x[i]+u[i])}return xscale(x[i])+u[i]/jitter_width*xNA_size.width/2})}}else if(jitter==="beeswarm"){if(horizontal){d3.range(scaledPoints.length).map(function(i){return scaledPoints[i].fx=scaledPoints[i].x});force=d3.forceSimulation(scaledPoints).force("y",d3.forceY(function(d){return d.y})).force("collide",d3.forceCollide(pointsize*1.1)).stop()}else{d3.range(scaledPoints.length).map(function(i){return scaledPoints[i].fy=scaledPoints[i].y});force=d3.forceSimulation(scaledPoints).force("x",d3.forceX(function(d){return d.x})).force("collide",d3.forceCollide(pointsize*1.1)).stop()}(function(){var results=[];for(var j=0;j<=30;j++){results.push(j)}return results}).apply(this).map(function(d){force.tick();return points.attr("cx",function(d){return d.x}).attr("cy",function(d){return d.y})})}else if(jitter!=="none"){d3panels.displayError('dotchart: jitter should be "beeswarm", "random", or "none"')}return myframe.box().raise()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.xNA=function(){return xNA.handle};chart.yNA=function(){return yNA.handle};chart.points=function(){return points};chart.indtip=function(){return indtip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(indtip);return null};return chart};"use strict";d3panels.heatmap=function(chartOpts){var cellSelect,cells,celltip,chart,colors,hilitcolor,margin,nullcolor,ref,ref1,ref2,ref3,ref4,ref5,ref6,ref7,ref8,svg,tipclass,xlim,xscale,ylim,yscale,zlim,zscale,zthresh;if(chartOpts==null){chartOpts={}}margin=(ref=chartOpts!=null?chartOpts.margin:void 0)!=null?ref:{left:60,top:40,right:40,bottom:40,inner:0};xlim=(ref1=chartOpts!=null?chartOpts.xlim:void 0)!=null?ref1:null;ylim=(ref2=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref2:null;nullcolor=(ref3=chartOpts!=null?chartOpts.nullcolor:void 0)!=null?ref3:"#e6e6e6";colors=(ref4=chartOpts!=null?chartOpts.colors:void 0)!=null?ref4:["slateblue","white","crimson"];zlim=(ref5=chartOpts!=null?chartOpts.zlim:void 0)!=null?ref5:null;zthresh=(ref6=chartOpts!=null?chartOpts.zthresh:void 0)!=null?ref6:null;hilitcolor=(ref7=chartOpts!=null?chartOpts.hilitcolor:void 0)!=null?ref7:"black";tipclass=(ref8=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref8:"tooltip";xscale=null;yscale=null;zscale=null;cells=null;celltip=null;svg=null;cellSelect=null;chart=function chart(selection,data){var cell,cellrect,i,j,myframe,nx,ny,ref10,ref9,tooltipfunc,xlabels,xmid,xmid_scaled,xv,ylabels,ymid,ymid_scaled,yv,zmax,zmin;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:40,inner:0});if(!(data.x!=null||data.xcat!=null)){d3panels.displayError("heatmap: data.x is missing")}if(!(data.y!=null||data.ycat!=null)){d3panels.displayError("heatmap: data.y is missing")}if(data.z==null){d3panels.displayError("heatmap: data.z is missing")}if(data.xcat!=null){data.x=function(){var results;results=[];for(i in data.xcat){results.push(+i)}return results}();xlim=xlim!=null?xlim:[-.5,data.x.length-.5];chartOpts.xticks=data.x;chartOpts.xlineOpts={color:"none",width:0};chartOpts.xlab=(ref9=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref9:""}if(data.ycat!=null){data.y=function(){var results;results=[];for(i in data.ycat){results.push(+i)}return results}();ylim=ylim!=null?ylim:[-.5,data.x.length-.5];chartOpts.yticks=data.y;chartOpts.ylineOpts={color:"none",width:0};chartOpts.ylab=(ref10=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref10:""}nx=data.x.length;ny=data.y.length;if(data.z.length!==nx){d3panels.displayError("heatmap: data.x.length ("+nx+") != data.z.length ("+data.z.length+")")}for(i in data.z){if(data.z[i].length!==ny){d3panels.displayError("heatmap: data.y.length ("+ny+") != data.z["+i+"].length ("+data.z[i].length+")")}}cells=[];for(i in data.z){for(j in data.z[i]){cells.push({x:data.x[i],y:data.y[j],z:data.z[i][j],xindex:+i,yindex:+j})}}xmid=d3panels.calc_midpoints(d3panels.pad_vector(data.x));ymid=d3panels.calc_midpoints(d3panels.pad_vector(data.y));xlim=xlim!=null?xlim:d3.extent(xmid);ylim=ylim!=null?ylim:d3.extent(ymid);zmin=d3panels.matrixMin(data.z);zmax=d3panels.matrixMaxAbs(data.z);zlim=zlim!=null?zlim:[-zmax,0,zmax];if(zlim.length!==colors.length){d3panels.displayError("heatmap: zlim.length ("+zlim.length+") != colors.length ("+colors.length+")")}zscale=d3.scaleLinear().domain(zlim).range(colors);zthresh=zthresh!=null?zthresh:zmin-1;cells=function(){var k,len,results;results=[];for(k=0,len=cells.length;k<len;k++){cell=cells[k];if(Math.abs(cell.z)>=zthresh){results.push(cell)}}return results}();chartOpts.margin=margin;chartOpts.xlim=xlim;chartOpts.ylim=ylim;chartOpts.xNA=false;chartOpts.yNA=false;myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();xlabels=myframe.xlabels();ylabels=myframe.ylabels();xmid_scaled=function(){var k,len,results;results=[];for(k=0,len=xmid.length;k<len;k++){xv=xmid[k];results.push(xscale(xv))}return results}();ymid_scaled=function(){var k,len,results;results=[];for(k=0,len=ymid.length;k<len;k++){yv=ymid[k];results.push(yscale(yv))}return results}();d3panels.calc_cell_rect(cells,xmid_scaled,ymid_scaled);cellrect=svg.append("g").attr("id","cells");cellSelect=cellrect.selectAll("empty").data(cells).enter().append("rect").attr("x",function(d){return d.left}).attr("y",function(d){return d.top}).attr("width",function(d){return d.width}).attr("height",function(d){return d.height}).attr("class",function(d,i){return"cell"+i}).attr("fill",function(d){if(d.z!=null){return zscale(d.z)}else{return nullcolor}}).attr("stroke","none").attr("stroke-width","1").attr("shape-rendering","crispEdges").on("mouseover",function(d){d3.select(this).attr("stroke",hilitcolor).raise();if(data.xcat!=null){svg.select("text#xlab"+d.x).attr("opacity",1)}if(data.ycat!=null){return svg.select("text#ylab"+d.y).attr("opacity",1)}}).on("mouseout",function(d){d3.select(this).attr("stroke","none");if(data.xcat!=null){svg.select("text#xlab"+d.x).attr("opacity",0)}if(data.ycat!=null){return svg.select("text#ylab"+d.y).attr("opacity",0)}});tooltipfunc=function tooltipfunc(d,i){var x,y,z;x=d3panels.formatAxis(data.x)(d.x);y=d3panels.formatAxis(data.y)(d.y);z=d3panels.formatAxis([0,zmax/100])(d.z);if(data.xcat!=null&&data.ycat!=null){return""+z}if(data.xcat!=null){return"("+y+") &rarr; "+z}if(data.ycat!=null){return"("+x+") &rarr; "+z}return"("+x+", "+y+") &rarr; "+z};celltip=d3panels.tooltip_create(d3.select("body"),cellrect.selectAll("rect"),{tipclass:tipclass},tooltipfunc);if(data.xcat!=null){xlabels.text(function(d,i){return data.xcat[i]}).attr("opacity",0).attr("id",function(d,i){return"xlab"+data.x[i]})}if(data.ycat!=null){ylabels.text(function(d,i){return data.ycat[i]}).attr("opacity",0).attr("id",function(d,i){return"ylab"+data.y[i]})}return myframe.box().raise()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.zscale=function(){return zscale};chart.cells=function(){return cellSelect};chart.celltip=function(){return celltip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(celltip);return null};return chart};"use strict";d3panels.lodchart=function(chartOpts){var chart,chrSelect,linecolor,linewidth,markerSelect,markertip,pointcolor,pointsize,pointstroke,ref,ref1,ref2,ref3,ref4,ref5,ref6,_svg,tipclass,_xscale,ylim,_yscale;if(chartOpts==null){chartOpts={}}linecolor=(ref=chartOpts!=null?chartOpts.linecolor:void 0)!=null?ref:"darkslateblue";linewidth=(ref1=chartOpts!=null?chartOpts.linewidth:void 0)!=null?ref1:2;pointcolor=(ref2=chartOpts!=null?chartOpts.pointcolor:void 0)!=null?ref2:"#e9cfec";pointsize=(ref3=chartOpts!=null?chartOpts.pointsize:void 0)!=null?ref3:0;pointstroke=(ref4=chartOpts!=null?chartOpts.pointstroke:void 0)!=null?ref4:"black";ylim=(ref5=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref5:null;tipclass=(ref6=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref6:"tooltip";_xscale=null;_yscale=null;chrSelect=null;markerSelect=null;markertip=null;_svg=null;chart=function chart(selection,data){var add2chart,i,myframe,self_chart;if(data.chr==null){d3panels.displayError("lodchart: data.chr is missing")}if(data.pos==null){d3panels.displayError("lodchart: data.pos is missing")}if(data.lod==null){d3panels.displayError("lodchart: data.lod is missing")}if(data.marker==null){d3panels.displayError("lodchart: data.marker is missing")}if(data.pos.length!==data.chr.length){d3panels.displayError("lodchart: data.pos.length ("+data.pos.length+") != data.chr.length ("+data.chr.length+")")}if(data.lod.length!==data.chr.length){d3panels.displayError("lodchart: data.lod.length ("+data.lod.length+") != data.chr.length ("+data.chr.length+")")}if(data.marker==null){data.marker=[function(){var results;results=[];for(i in data.chr){results.push("")}return results}()]}if(data.marker.length!==data.chr.length){d3panels.displayError("lodchart: data.marker.length ("+data.marker.length+") != data.chr.length ("+data.chr.length+")")}data=d3panels.add_chrname_start_end(data);data=d3panels.reorgLodData(data);chartOpts.ylim=ylim!=null?ylim:[0,d3.max(data.lod)*1.05];myframe=d3panels.chrpanelframe(chartOpts);myframe(selection,{chr:data.chrname,start:data.chrstart,end:data.chrend});_svg=myframe.svg();_xscale=myframe.xscale();_yscale=myframe.yscale();chrSelect=myframe.chrSelect();self_chart={svg:function svg(){return _svg},xscale:function xscale(){return _xscale},yscale:function yscale(){return _yscale}};add2chart=d3panels.add_lodcurve(chartOpts);add2chart(self_chart,data);markerSelect=add2chart.markerSelect();markertip=add2chart.markertip();return myframe.box().raise()};chart.xscale=function(){return _xscale};chart.yscale=function(){return _yscale};chart.chrSelect=function(){return chrSelect};chart.markerSelect=function(){return markerSelect};chart.markertip=function(){return markertip};chart.svg=function(){return _svg};chart.remove=function(){_svg.remove();d3panels.tooltip_destroy(markertip);return null};return chart};"use strict";d3panels.add_lodcurve=function(chartOpts){var chart,g,horizontal,linecolor,linedash,linewidth,markerSelect,markertip,pointcolor,pointsize,pointstroke,ref,ref1,ref2,ref3,ref4,ref5,ref6,ref7,tipclass;if(chartOpts==null){chartOpts={}}linecolor=(ref=chartOpts!=null?chartOpts.linecolor:void 0)!=null?ref:"darkslateblue";linewidth=(ref1=chartOpts!=null?chartOpts.linewidth:void 0)!=null?ref1:2;linedash=(ref2=chartOpts!=null?chartOpts.linedash:void 0)!=null?ref2:"";pointcolor=(ref3=chartOpts!=null?chartOpts.pointcolor:void 0)!=null?ref3:"#e9cfec";pointsize=(ref4=chartOpts!=null?chartOpts.pointsize:void 0)!=null?ref4:0;pointstroke=(ref5=chartOpts!=null?chartOpts.pointstroke:void 0)!=null?ref5:"black";tipclass=(ref6=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref6:"tooltip";horizontal=(ref7=chartOpts!=null?chartOpts.horizontal:void 0)!=null?ref7:false;markerSelect=null;markertip=null;g=null;chart=function chart(prevchart,data){var bigpointsize,chr,curves,hiddenpoints,i,j,len,lodcurve,markerpoints,ref8,svg,xscale,yscale;if(data.chr==null){d3panels.displayError("add_lodcurve: data.chr is missing")}if(data.pos==null){d3panels.displayError("add_lodcurve: data.pos is missing")}if(data.lod==null){d3panels.displayError("add_lodcurve: data.lod is missing")}if(data.marker==null){d3panels.displayError("add_lodcurve: data.marker is missing")}if(data.pos.length!==data.chr.length){d3panels.displayError("add_lodcurve: data.pos.length ("+data.pos.length+") != data.chr.length ("+data.chr.length+")")}if(data.lod.length!==data.chr.length){d3panels.displayError("add_lodcurve: data.lod.length ("+data.lod.length+") != data.chr.length ("+data.chr.length+")")}if(data.marker==null){data.marker=[function(){var results;results=[];for(i in data.chr){results.push("")}return results}()]}if(data.marker.length!==data.chr.length){d3panels.displayError("add_lodcurve: data.marker.length ("+data.lod.length+") != data.chr.length ("+data.chr.length+")")}data=d3panels.add_chrname_start_end(data);if(!(data.posByChr!=null&&data.lodByChr!=null&&data.markerinfo!=null)){data=d3panels.reorgLodData(data)}svg=prevchart.svg();g=svg.append("g").attr("id","lod_curve");xscale=prevchart.xscale();yscale=prevchart.yscale();lodcurve=function lodcurve(chr){return d3.line().x(function(d,i){if(horizontal){return yscale(data.lodByChr[chr][i])}return xscale[chr](d)}).y(function(d,i){if(horizontal){return xscale[chr](d)}return yscale(data.lodByChr[chr][i])})};if(linewidth>0){curves=g.append("g").attr("id","curves");ref8=data.chrname;for(j=0,len=ref8.length;j<len;j++){chr=ref8[j];curves.append("path").datum(data.posByChr[chr]).attr("d",lodcurve(chr)).attr("stroke",linecolor).attr("fill","none").attr("stroke-width",linewidth).attr("stroke-dasharray",linedash).style("pointer-events","none")}}if(pointsize>0){markerpoints=g.append("g").attr("id","markerpoints_visible");markerpoints.selectAll("empty").data(data.markerinfo).enter().append("circle").attr("cx",function(d){if(horizontal){return yscale(d.lod)}return xscale[d.chr](d.pos)}).attr("cy",function(d){if(horizontal){return xscale[d.chr](d.pos)}return yscale(d.lod)}).attr("r",function(d){if(d.lod!=null){return pointsize}else{return null}}).attr("fill",pointcolor).attr("stroke",pointstroke).attr("pointer-events","hidden")}hiddenpoints=g.append("g").attr("id","markerpoints_hidden");bigpointsize=d3.max([2*pointsize,3]);markerSelect=hiddenpoints.selectAll("empty").data(data.markerinfo).enter().append("circle").attr("cx",function(d){if(horizontal){return yscale(d.lod)}return xscale[d.chr](d.pos)}).attr("cy",function(d){if(horizontal){return xscale[d.chr](d.pos)}return yscale(d.lod)}).attr("id",function(d){return d.name}).attr("r",function(d){if(d.lod!=null){return bigpointsize}else{return null}}).attr("opacity",0).attr("fill",pointcolor).attr("stroke",pointstroke).attr("stroke-width","1").on("mouseover",function(d){return d3.select(this).attr("opacity",1)}).on("mouseout",function(){return d3.select(this).attr("opacity",0)});return markertip=d3panels.tooltip_create(d3.select("body"),markerSelect,{tipclass:tipclass},function(d,i){return[d.name," LOD = "+d3.format(".2f")(d.lod)]})};chart.markerSelect=function(){return markerSelect};chart.markertip=function(){return markertip};chart.remove=function(){g.remove();d3panels.tooltip_destroy(markertip);return null};return chart};"use strict";d3panels.add_curves=function(chartOpts){var chart,curveGroup,curves,indtip,linecolor,linecolorhilit,linewidth,linewidthhilit,ref,ref1,ref2,ref3,ref4,tipclass;if(chartOpts==null){chartOpts={}}linecolor=(ref=chartOpts!=null?chartOpts.linecolor:void 0)!=null?ref:null;linecolorhilit=(ref1=chartOpts!=null?chartOpts.linecolorhilit:void 0)!=null?ref1:null;linewidth=(ref2=chartOpts!=null?chartOpts.linewidth:void 0)!=null?ref2:2;linewidthhilit=(ref3=chartOpts!=null?chartOpts.linewidthhilit:void 0)!=null?ref3:2;tipclass=(ref4=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref4:"tooltip";curves=null;indtip=null;curveGroup=null;chart=function chart(prevchart,data){var curvefunc,dataByPoint,g,group,i,indID,j,k,n_ind,ngroup,ref5,ref6,ref7,svg,x,xscale,y,yscale;if(data.x==null){d3panels.displayError("add_curves: data.x is missing")}if(data.y==null){d3panels.displayError("add_curves: data.y is missing")}x=function(){var k,len,ref5,results;ref5=data.x;results=[];for(k=0,len=ref5.length;k<len;k++){x=ref5[k];results.push(d3panels.missing2null(x))}return results}();y=function(){var k,len,ref5,results;ref5=data.y;results=[];for(k=0,len=ref5.length;k<len;k++){y=ref5[k];results.push(d3panels.missing2null(y))}return results}();n_ind=y.length;if(x.length===1&&y.length>1){for(j=k=2,ref5=n_ind;2<=ref5?k<=ref5:k>=ref5;j=2<=ref5?++k:--k){x.push(x[0])}}if(x.length!==n_ind){d3panels.displayError("add_curves: data.x.length ("+x.length+") != data.y.length ("+n_ind+")")}indID=(ref6=data!=null?data.indID:void 0)!=null?ref6:function(){var results=[];for(var l=1;1<=n_ind?l<=n_ind:l>=n_ind;1<=n_ind?l++:l--){results.push(l)}return results}.apply(this);if(indID.length!==n_ind){d3panels.displayError("add_curves: data.indID.length ("+indID.length+") != data.y.length ("+n_ind+")")}group=(ref7=data!=null?data.group:void 0)!=null?ref7:function(){var results;results=[];for(i in y){results.push(1)}return results}();group=d3panels.expand2vector(group,n_ind);ngroup=d3.max(group);group=function(){var l,len,results;results=[];for(l=0,len=group.length;l<len;l++){g=group[l];results.push(g!=null?g-1:g)}return results}();if(d3panels.sumArray(function(){var l,len,results;results=[];for(l=0,len=group.length;l<len;l++){g=group[l];results.push(g<0||g>ngroup-1)}return results}())>0){d3panels.displayError("add_curves: group values out of range");console.log("distinct groups: "+d3panels.unique(group))}if(group.length!==n_ind){d3panels.displayError("add_curves: data.group.length ("+group.length+") != data.y.length ("+n_ind+")")}for(i in y){if(x[i].length!==y[i].length){d3panels.displayError("add_curves: length(x) ("+x[i].length+") != length(y) ("+y[i].length+") for individual "+indID[i]+" (index "+(i+1)+")")}}linecolor=linecolor!=null?linecolor:d3panels.selectGroupColors(ngroup,"pastel");linecolor=d3panels.expand2vector(linecolor,ngroup);linecolorhilit=linecolorhilit!=null?linecolorhilit:d3panels.selectGroupColors(ngroup,"dark");linecolorhilit=d3panels.expand2vector(linecolorhilit,ngroup);svg=prevchart.svg();xscale=prevchart.xscale();yscale=prevchart.yscale();dataByPoint=[];for(i in y){dataByPoint.push(function(){var results;results=[];for(j in y[i]){if(x[i][j]!=null&&y[i][j]!=null){results.push({x:x[i][j],y:y[i][j]})}}return results}())}curvefunc=d3.line().x(function(d){return xscale(d.x)}).y(function(d){return yscale(d.y)});curveGroup=svg.append("g").attr("id","curves");curves=curveGroup.selectAll("empty").data(d3.range(n_ind)).enter().append("path").datum(function(d){return dataByPoint[d]}).attr("d",curvefunc).attr("class",function(d,i){return"path"+i}).attr("fill","none").attr("stroke",function(d,i){return linecolor[group[i]]}).attr("stroke-width",linewidth).on("mouseover.panel",function(d,i){return d3.select(this).attr("stroke",linecolorhilit[group[i]]).attr("stroke-width",linewidthhilit).raise()}).on("mouseout.panel",function(d,i){return d3.select(this).attr("stroke",linecolor[group[i]]).attr("stroke-width",linewidth)});indtip=d3panels.tooltip_create(d3.select("body"),curves,{tipclass:tipclass},function(d,i){return indID[i]});return prevchart.box().raise()};chart.curves=function(){return curves};chart.indtip=function(){return indtip};chart.remove=function(){curveGroup.remove();d3panels.tooltip_destroy(indtip);return null};return chart};"use strict";d3panels.add_points=function(chartOpts){var chart,indtip,jitter,pointGroup,pointcolor,points,pointsize,pointstroke,ref,ref1,ref2,ref3,ref4,tipclass;if(chartOpts==null){chartOpts={}}pointcolor=(ref=chartOpts!=null?chartOpts.pointcolor:void 0)!=null?ref:null;pointsize=(ref1=chartOpts!=null?chartOpts.pointsize:void 0)!=null?ref1:3;pointstroke=(ref2=chartOpts!=null?chartOpts.pointstroke:void 0)!=null?ref2:"black";jitter=(ref3=chartOpts!=null?chartOpts.jitter:void 0)!=null?ref3:"beeswarm";tipclass=(ref4=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref4:"tooltip";points=null;indtip=null;pointGroup=null;chart=function chart(prevchart,data){var force,g,group,i,indID,ngroup,ref5,ref6,ref7,scaledPoints,svg,ux,uy,x,xscale,xwid,y,yscale,ywid;if(data.x==null){d3panels.displayError("add_points: data.x is missing")}if(data.y==null){d3panels.displayError("add_points: data.y is missing")}x=d3panels.missing2null(data.x);y=d3panels.missing2null(data.y);if(x.length!==y.length){d3panels.displayError("add_points: x.length ("+x.length+") != y.length ("+y.length+")")}indID=(ref5=data!=null?data.indID:void 0)!=null?ref5:null;indID=indID!=null?indID:function(){var results=[];for(var j=1,ref6=x.length;1<=ref6?j<=ref6:j>=ref6;1<=ref6?j++:j--){results.push(j)}return results}.apply(this);if(indID.length!==x.length){d3panels.displayError("add_points: indID.length ("+indID.length+") != x.length ("+x.length+")")}group=(ref7=data!=null?data.group:void 0)!=null?ref7:function(){var j,len,results;results=[];for(j=0,len=x.length;j<len;j++){i=x[j];results.push(1)}return results}();group=d3panels.expand2vector(group,x.length);ngroup=d3.max(group);group=function(){var j,len,results;results=[];for(j=0,len=group.length;j<len;j++){g=group[j];results.push(g!=null?g-1:g)}return results}();if(d3panels.sumArray(function(){var j,len,results;results=[];for(j=0,len=group.length;j<len;j++){g=group[j];results.push(g<0||g>ngroup-1)}return results}())>0){d3panels.displayError("add_points: group values out of range");console.log("ngroup: "+ngroup);console.log("distinct groups: "+d3panels.unique(group))}if(group.length!==x.length){d3panels.displayError("add_points: group.length ("+group.length+") != x.length ("+x.length+")")}pointcolor=pointcolor!=null?pointcolor:d3panels.selectGroupColors(ngroup,"dark");pointcolor=d3panels.expand2vector(pointcolor,ngroup);if(pointcolor.length<ngroup){d3panels.displayError("add_points: pointcolor.length ("+pointcolor.length+") < ngroup ("+ngroup+")")}svg=prevchart.svg();xscale=prevchart.xscale();yscale=prevchart.yscale();pointGroup=svg.append("g").attr("id","points");points=pointGroup.selectAll("empty").data(d3.range(x.length)).enter().append("circle").attr("cx",function(d,i){return xscale(x[i])}).attr("cy",function(d,i){return yscale(y[i])}).attr("class",function(d,i){return"pt"+i}).attr("r",pointsize).attr("fill",function(d,i){return pointcolor[group[i]]}).attr("stroke",pointstroke).attr("stroke-width","1");indtip=d3panels.tooltip_create(d3.select("body"),points,{tipclass:tipclass},function(d,i){return indID[i]});if(prevchart.xNA()||prevchart.yNA()){if(jitter==="random"){xwid=20-pointsize-2;xwid=xwid<=2?2:xwid;ywid=20-pointsize-2;ywid=ywid<=2?2:ywid;ux=function(){var results;results=[];for(i in x){results.push((Math.random()-.5)*xwid)}return results}();uy=function(){var results;results=[];for(i in x){results.push((Math.random()-.5)*ywid)}return results}();points.attr("cx",function(d,i){if(x[i]!=null){return xscale(x[i])}return xscale(x[i])+ux[i]}).attr("cy",function(d,i){if(y[i]!=null){return yscale(y[i])}return yscale(y[i])+uy[i]})}else if(jitter==="beeswarm"){scaledPoints=function(){var results;results=[];for(i in x){results.push({x:xscale(x[i]),y:yscale(y[i]),xnull:x[i]==null,ynull:y[i]==null})}return results}();d3.range(scaledPoints.length).map(function(i){if(!scaledPoints[i].xnull){scaledPoints[i].fx=scaledPoints[i].x}if(!scaledPoints[i].ynull){return scaledPoints[i].fy=scaledPoints[i].y}});force=d3.forceSimulation(scaledPoints).force("x",d3.forceX(function(d){return d.x})).force("y",d3.forceY(function(d){return d.y})).force("collide",d3.forceCollide(pointsize*1.1)).stop();(function(){var results=[];for(var j=0;j<=30;j++){results.push(j)}return results}).apply(this).map(function(d){force.tick();return points.attr("cx",function(d,i){return scaledPoints[i].x}).attr("cy",function(d,i){return scaledPoints[i].y})})}else if(jitter!=="none"){d3panels.displayError('add_points: jitter should be "beeswarm", "random", or "none"')}}return prevchart.box().raise()};chart.points=function(){return points};chart.indtip=function(){return indtip};chart.remove=function(){pointGroup.remove();d3panels.tooltip_destroy(indtip);return null};return chart};"use strict";d3panels.lodheatmap=function(chartOpts){var cellSelect,cells,celltip,chart,chrGap,colors,equalCells,height,hilitcolor,horizontal,margin,nullcolor,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,svg,tipclass,width,xlab,xscale,ylab,ylim,yscale,zlim,zscale,zthresh;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:500;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:40,right:40,bottom:40};colors=(ref3=chartOpts!=null?chartOpts.colors:void 0)!=null?ref3:["slateblue","white","crimson"];nullcolor=(ref4=chartOpts!=null?chartOpts.nullcolor:void 0)!=null?ref4:"#e6e6e6";xlab=(ref5=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref5:null;ylab=(ref6=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref6:"";ylim=(ref7=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref7:null;zlim=(ref8=chartOpts!=null?chartOpts.zlim:void 0)!=null?ref8:null;zthresh=(ref9=chartOpts!=null?chartOpts.zthresh:void 0)!=null?ref9:null;horizontal=(ref10=chartOpts!=null?chartOpts.horizontal:void 0)!=null?ref10:false;hilitcolor=(ref11=chartOpts!=null?chartOpts.hilitcolor:void 0)!=null?ref11:"black";chrGap=(ref12=chartOpts!=null?chartOpts.chrGap:void 0)!=null?ref12:6;equalCells=(ref13=chartOpts!=null?chartOpts.equalCells:void 0)!=null?ref13:false;tipclass=(ref14=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref14:"tooltip";xscale=null;yscale=null;zscale=null;cells=null;celltip=null;svg=null;cellSelect=null;chart=function chart(selection,data){var cellg,celltipfunc,chr,direction,i,j,k,l,len,len1,len2,len3,len4,lod,m,myframe,n,n_lod,n_pos,o,pos,ref15,ref16,ref17,ref18,ref19,x,xmid_scaled,y,ylabels,ymid,ymid_scaled,yv,zmax,zmin;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:40,bottom:40});if(data.chr==null){d3panels.displayError("lodheatmap: data.chr is missing")}if(data.pos==null){d3panels.displayError("lodheatmap: data.pos is missing")}if(data.lod==null){d3panels.displayError("lodheatmap: data.lod is missing")}if(data.ycat!=null){data.y=function(){var results;results=[];for(i in data.ycat){results.push(i+1)}return results}()}if(data.y==null){data.ycat=function(){var results;results=[];for(i in data.lod[0]){results.push(i+1)}return results}();data.y=function(){var results;results=[];for(i in data.lod[0]){results.push(i+1)}return results}()}data.y=function(){var k,len,ref15,results;ref15=data.y;results=[];for(k=0,len=ref15.length;k<len;k++){yv=ref15[k];results.push(+yv)}return results}();n_pos=data.chr.length;n_lod=data.y.length;if(n_pos!==data.pos.length){d3panels.displayError("lodheatmap: data.pos.length ("+data.pos.length+") != data.chr.length ("+n_pos+")")}if(n_pos!==data.lod.length){d3panels.displayError("lodheatmap: data.lod.length ("+data.lod.length+") != data.chr.length ("+n_pos+")")}for(i in data.lod){if(data.lod[i].length!==data.y.length){d3panels.displayError("lodheatmap: data.lod["+i+"].length ("+data.lod[i].length+") != data.y.length ("+n_lod+")")}}if(data.poslabel!=null){if(data.poslabel.length!==n_pos){d3panels.displayError("lodheatmap: data.poslabel.length ("+data.poslabel.length+") != data.chr.length ("+n_pos+")")}}else{data.poslabel=function(){var results;results=[];for(i in data.chr){results.push(data.chr[i]+"@"+d3panels.formatAxis(data.pos)(data.pos[i]))}return results}()}if(data.chrname==null){data.chrname=d3panels.unique(data.chr)}data.chrname=d3panels.forceAsArray(data.chrname);if(equalCells){data.pos=[];ref15=data.chrname;for(k=0,len=ref15.length;k<len;k++){chr=ref15[k];data.pos=data.pos.concat(function(){var results;results=[];for(i in data.chr){if(data.chr[i]===chr){results.push(+i)}}return results}())}}data=d3panels.add_chrname_start_end(data);if(equalCells){chrGap=(width-margin.left-margin.right-2*data.chrname.length)/data.chr.length+2}data=d3panels.reorgLodData(data);ymid=d3panels.calc_midpoints(d3panels.pad_vector(data.y));chartOpts.ylim=ylim!=null?ylim:d3.extent(ymid);chartOpts.horizontal=horizontal;chartOpts.xlab=xlab;chartOpts.ylab=ylab;chartOpts.chrGap=chrGap;chartOpts.width=width;chartOpts.height=height;chartOpts.margin=margin;if(data.ycat!=null){chartOpts.yticks=data.y;chartOpts.yticklab=data.ycat}myframe=d3panels.chrpanelframe(chartOpts);myframe(selection,{chr:data.chrname,start:data.chrstart,end:data.chrend});svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();ylabels=myframe.ylabels();ymid_scaled=function(){var l,len1,results;results=[];for(l=0,len1=ymid.length;l<len1;l++){y=ymid[l];results.push(yscale(y))}return results}();xmid_scaled={};ref16=data.chrname;for(l=0,len1=ref16.length;l<len1;l++){chr=ref16[l];xmid_scaled[chr]=d3panels.calc_midpoints(d3panels.pad_vector(function(){var len2,m,ref17,results;ref17=data.posByChr[chr];results=[];for(m=0,len2=ref17.length;m<len2;m++){x=ref17[m];results.push(xscale[chr](x))}return results}(),(chrGap-2)/2))}zmin=d3panels.matrixMin(data.lod);zmax=d3panels.matrixMaxAbs(data.lod);zlim=zlim!=null?zlim:[-zmax,0,zmax];if(zlim.length!==colors.length){d3panels.displayError("lodheatmap: zlim.length ("+zlim.length+") != colors.length ("+colors.length+")")}zscale=d3.scaleLinear().domain(zlim).range(colors);zthresh=zthresh!=null?zthresh:zmin-1;cells=[];ref17=data.chrname;for(m=0,len2=ref17.length;m<len2;m++){chr=ref17[m];ref18=data.posByChr[chr];for(i=n=0,len3=ref18.length;n<len3;i=++n){pos=ref18[i];ref19=data.lodByChr[chr][i];for(j=o=0,len4=ref19.length;o<len4;j=++o){lod=ref19[j];if(Math.abs(lod)>=zthresh){cells.push({lod:lod,chr:chr,pos:pos,poslabel:data.poslabelByChr[chr][i],posindex:+i,lodindex:+j})}}}}d3panels.calc_chrcell_rect(cells,xmid_scaled,ymid_scaled);cellg=svg.append("g").attr("id","cells");cellSelect=cellg.selectAll("empty").data(cells).enter().append("rect").attr("x",function(d){if(horizontal){return d.top}return d.left}).attr("y",function(d){if(horizontal){return d.left}return d.top}).attr("width",function(d){if(horizontal){return d.height}return d.width}).attr("height",function(d){if(horizontal){return d.width}return d.height}).attr("class",function(d,i){return"cell"+i}).attr("fill",function(d){if(d.lod!=null){return zscale(d.lod)}else{return nullcolor}}).attr("stroke","none").attr("stroke-width","1").attr("shape-rendering","crispEdges").on("mouseover",function(d){d3.select(this).attr("stroke",hilitcolor).raise();if(data.ycat!=null){return svg.select("text#ylab"+d.lodindex).attr("opacity",1)}}).on("mouseout",function(d){d3.select(this).attr("stroke","none");if(data.ycat!=null){return svg.select("text#ylab"+d.lodindex).attr("opacity",0)}});if(data.ycat!=null){svg.selectAll("g#ylines").remove();ylabels.attr("opacity",0).attr("id",function(d,i){return"ylab"+i})}celltipfunc=function celltipfunc(d){var lodlabel,z;z=d3.format(".2f")(Math.abs(d.lod));lodlabel=data.ycat!=null?data.ycat[d.lodindex]:d3panels.formatAxis(data.y)(data.y[d.lodindex]);if(horizontal){return lodlabel+", "+d.poslabel+" &rarr; "+z}return d.poslabel+", "+lodlabel+" &rarr; "+z};direction=horizontal?"north":"east";celltip=d3panels.tooltip_create(d3.select("body"),cellg.selectAll("rect"),{direction:direction,tipclass:tipclass},celltipfunc);return myframe.box().raise()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.zscale=function(){return yscale};chart.cells=function(){return cellSelect};chart.celltip=function(){return celltip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(celltip);return null};return chart};"use strict";d3panels.mapchart=function(chartOpts){var chart,horizontal,linecolor,linecolorhilit,linewidth,markerSelect,martip,ref,ref1,ref10,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,shiftStart,svg,tickwidth,tipclass,v_over_h,xlab,xlineOpts,xscale,ylab,yscale;if(chartOpts==null){chartOpts={}}tickwidth=(ref=chartOpts!=null?chartOpts.tickwidth:void 0)!=null?ref:10;linecolor=(ref1=chartOpts!=null?chartOpts.linecolor:void 0)!=null?ref1:"slateblue";linecolorhilit=(ref2=chartOpts!=null?chartOpts.linecolorhilit:void 0)!=null?ref2:"Orchid";linewidth=(ref3=chartOpts!=null?chartOpts.linewidth:void 0)!=null?ref3:3;xlab=(ref4=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref4:"Chromosome";ylab=(ref5=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref5:"Position (cM)";xlineOpts=(ref6=chartOpts!=null?chartOpts.xlineOpts:void 0)!=null?ref6:{color:"#cdcdcd",width:5};horizontal=(ref7=chartOpts!=null?chartOpts.horizontal:void 0)!=null?ref7:false;v_over_h=(ref8=chartOpts!=null?chartOpts.v_over_h:void 0)!=null?ref8:horizontal;shiftStart=(ref9=chartOpts!=null?chartOpts.shiftStart:void 0)!=null?ref9:false;tipclass=(ref10=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref10:"tooltip";xscale=null;yscale=null;markerSelect=null;martip=null;svg=null;chart=function chart(selection,data){var chr,chrscale,direction,extentByChr,i,j,k,l,len,len1,markerpos,markers,minpos,myframe,n_chr,n_pos,pos,ref11,ref12,these_index,these_pos,tipfunc,x,xlim,xticklab,xticks,ylim;xlineOpts=d3panels.check_listarg_v_default(xlineOpts,{color:"#cdcdcd",width:5});if(data.chr==null){d3panels.displayError("mapchart: data.chr is missing")}if(data.pos==null){d3panels.displayError("mapchart: data.pos is missing")}if(data.marker==null){d3panels.displayError("mapchart: data.marker is missing")}n_pos=data.pos.length;if(data.chr.length!==n_pos){d3panels.displayError("mapchart: data.chr.length ("+data.chr.length+") != data.pos.length ("+n_pos+")")}if(data.marker.length!==n_pos){d3panels.displayError("mapchart: data.marker.length ("+data.marker.length+") != data.pos.length ("+n_pos+")")}if(data.chrname==null){data.chrname=d3panels.unique(data.chr)}data.chrname=d3panels.forceAsArray(data.chrname);data.adjpos=data.pos.slice(0);if(shiftStart){ref11=data.chrname;for(k=0,len=ref11.length;k<len;k++){chr=ref11[k];these_pos=function(){var results;results=[];for(i in data.pos){if(data.chr[i]===chr){results.push(data.pos[i])}}return results}();these_index=function(){var results;results=[];for(i in data.pos){if(data.chr[i]===chr){results.push(i)}}return results}();minpos=d3.min(these_pos);these_pos=function(){var l,len1,results;results=[];for(l=0,len1=these_pos.length;l<len1;l++){x=these_pos[l];results.push(x-minpos)}return results}();for(j in these_pos){data.adjpos[these_index[j]]=these_pos[j]}}}extentByChr={};ref12=data.chrname;for(l=0,len1=ref12.length;l<len1;l++){chr=ref12[l];pos=function(){var results;results=[];for(i in data.adjpos){if(data.chr[i]===chr){results.push(data.adjpos[i])}}return results}();extentByChr[chr]=d3.extent(pos)}ylim=ylim!=null?ylim:d3.extent(data.adjpos);n_chr=data.chrname.length;xlim=[.5,n_chr+.5];xticks=function(){var len2,m,ref13,results;ref13=d3.range(n_chr);results=[];for(m=0,len2=ref13.length;m<len2;m++){i=ref13[m];results.push(i+1)}return results}();xticklab=data.chrname;chartOpts.xNA=false;chartOpts.yNA=false;if(horizontal){chartOpts.xlim=ylim;chartOpts.ylim=xlim.reverse();chartOpts.xlineOpts=chartOpts.ylineOpts;chartOpts.ylineOpts=xlineOpts;chartOpts.xlab=ylab;chartOpts.ylab=xlab;chartOpts.xticks=chartOpts.yticks;chartOpts.yticks=xticks;chartOpts.nxticks=chartOpts.nyticks;chartOpts.xticklab=chartOpts.yticklab;chartOpts.yticklab=xticklab;chartOpts.v_over_h=v_over_h}else{chartOpts.xlim=xlim;chartOpts.ylim=ylim.reverse();chartOpts.xlineOpts=xlineOpts;chartOpts.xlab=xlab;chartOpts.ylab=ylab;chartOpts.xticks=xticks;chartOpts.xticklab=xticklab;chartOpts.v_over_h=v_over_h}myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();chrscale=function chrscale(chr){var chrpos;chrpos=data.chrname.indexOf(chr)+1;if(!horizontal){return xscale(chrpos)}return yscale(chrpos)};svg.append("g").attr("id","chromosomes").selectAll("empty").data(data.chrname).enter().append("line").attr("x1",function(d){if(horizontal){return xscale(extentByChr[d][0])}return chrscale(d)}).attr("x2",function(d){if(horizontal){return xscale(extentByChr[d][1])}return chrscale(d)}).attr("y1",function(d){if(horizontal){return chrscale(d)}return yscale(extentByChr[d][0])}).attr("y2",function(d){if(horizontal){return chrscale(d)}return yscale(extentByChr[d][1])}).attr("fill","none").attr("stroke",linecolor).attr("stroke-width",linewidth).attr("shape-rendering","crispEdges").style("pointer-events","none");markerpos={};for(i in data.marker){markerpos[data.marker[i]]=d3.format(".1f")(data.pos[i])}markers=svg.append("g").attr("id","points");markerSelect=markers.selectAll("empty").data(data.marker).enter().append("line").attr("x1",function(d,i){if(horizontal){return xscale(data.adjpos[i])}return chrscale(data.chr[i])-tickwidth}).attr("x2",function(d,i){if(horizontal){return xscale(data.adjpos[i])}return chrscale(data.chr[i])+tickwidth}).attr("y1",function(d,i){if(horizontal){return chrscale(data.chr[i])-tickwidth}return yscale(data.adjpos[i])}).attr("y2",function(d,i){if(horizontal){return chrscale(data.chr[i])+tickwidth}return yscale(data.adjpos[i])}).attr("id",function(d){return d}).attr("fill","none").attr("stroke",linecolor).attr("stroke-width",linewidth).attr("shape-rendering","crispEdges").on("mouseover.paneltip",function(d){return d3.select(this).attr("stroke",linecolorhilit)}).on("mouseout.paneltip",function(){return d3.select(this).attr("stroke",linecolor)});tipfunc=function tipfunc(d,i){return d+" ("+markerpos[d]+")"};direction=horizontal?"north":"east";martip=d3panels.tooltip_create(d3.select("body"),markers.selectAll("line"),{direction:direction,tipclass:tipclass},tipfunc);return myframe.box().raise()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.markerSelect=function(){return markerSelect};chart.martip=function(){return martip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(martip);return null};return chart};"use strict";d3panels.scatterplot=function(chartOpts){var chart,indtip,jitter,pointcolor,points,pointsize,pointstroke,ref,ref1,ref10,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,svg,tipclass,xNA,xNA_size,xlim,xscale,yNA,yNA_size,ylim,yscale;if(chartOpts==null){chartOpts={}}xNA=(ref=chartOpts!=null?chartOpts.xNA:void 0)!=null?ref:{handle:true,force:false};yNA=(ref1=chartOpts!=null?chartOpts.yNA:void 0)!=null?ref1:{handle:true,force:false};xNA_size=(ref2=chartOpts!=null?chartOpts.xNA_size:void 0)!=null?ref2:{width:20,gap:10};yNA_size=(ref3=chartOpts!=null?chartOpts.yNA_size:void 0)!=null?ref3:{width:20,gap:10};xlim=(ref4=chartOpts!=null?chartOpts.xlim:void 0)!=null?ref4:null;ylim=(ref5=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref5:null;pointcolor=(ref6=chartOpts!=null?chartOpts.pointcolor:void 0)!=null?ref6:null;pointstroke=(ref7=chartOpts!=null?chartOpts.pointstroke:void 0)!=null?ref7:"black";pointsize=(ref8=chartOpts!=null?chartOpts.pointsize:void 0)!=null?ref8:3;jitter=(ref9=chartOpts!=null?chartOpts.jitter:void 0)!=null?ref9:"beeswarm";tipclass=(ref10=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref10:"tooltip";xscale=null;yscale=null;xNA=xNA;yNA=yNA;points=null;indtip=null;svg=null;chart=function chart(selection,data){var addpts,myframe,x,y;xNA=d3panels.check_listarg_v_default(xNA,{handle:true,force:false});yNA=d3panels.check_listarg_v_default(yNA,{handle:true,force:false});xNA_size=d3panels.check_listarg_v_default(xNA,{width:20,gap:10});yNA_size=d3panels.check_listarg_v_default(yNA,{width:20,gap:10});if(data.x==null){d3panels.displayError("scatterplot: data.x is missing")}if(data.y==null){d3panels.displayError("scatterplot: data.y is missing")}x=d3panels.missing2null(data.x);y=d3panels.missing2null(data.y);if(x.length!==y.length){d3panels.displayError("scatterplot: x.length ("+x.length+") != y.length ("+y.length+")")}xNA.handle=xNA.force||xNA.handle&&!x.every(function(v){return v!=null});yNA.handle=yNA.force||yNA.handle&&!y.every(function(v){return v!=null});xlim=xlim!=null?xlim:d3panels.pad_ylim(d3.extent(x));ylim=ylim!=null?ylim:d3panels.pad_ylim(d3.extent(y));chartOpts.xlim=xlim;chartOpts.ylim=ylim;chartOpts.xNA=xNA.handle;chartOpts.yNA=yNA.handle;chartOpts.xNA_size=xNA_size;chartOpts.yNA_size=yNA_size;myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();addpts=d3panels.add_points({pointcolor:pointcolor,pointstroke:pointstroke,pointsize:pointsize,jitter:jitter,tipclass:tipclass});addpts(myframe,{x:x,y:y,indID:data.indID,group:data.group});points=addpts.points();return indtip=addpts.indtip()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.xNA=function(){return xNA.handle};chart.yNA=function(){return yNA.handle};chart.points=function(){return points};chart.indtip=function(){return indtip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(indtip);return null};return chart};"use strict";d3panels.trichart=function(chartOpts){var boxcolor,boxwidth,chart,gridcolor,gridlines,gridwidth,height,indtip,labelpos,labels,margin,pointcolor,points,pointsize,pointstroke,pscale,rectcolor,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,svg,tipclass,title,titlepos,width,xscale,yscale;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:600;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:520;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:60,top:40,right:60,bottom:10};labelpos=(ref3=chartOpts!=null?chartOpts.labelpos:void 0)!=null?ref3:10;titlepos=(ref4=chartOpts!=null?chartOpts.titlepos:void 0)!=null?ref4:20;title=(ref5=chartOpts!=null?chartOpts.title:void 0)!=null?ref5:"";labels=(ref6=chartOpts!=null?chartOpts.labels:void 0)!=null?ref6:["(1,0,0)","(0,1,0)","(0,0,1)"];rectcolor=(ref7=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref7:"#e6e6e6";boxcolor=(ref8=chartOpts!=null?chartOpts.boxcolor:void 0)!=null?ref8:"black";boxwidth=(ref9=chartOpts!=null?chartOpts.boxwidth:void 0)!=null?ref9:2;pointcolor=(ref10=chartOpts!=null?chartOpts.pointcolor:void 0)!=null?ref10:null;pointstroke=(ref11=chartOpts!=null?chartOpts.pointstroke:void 0)!=null?ref11:"black";pointsize=(ref12=chartOpts!=null?chartOpts.pointsize:void 0)!=null?ref12:3;gridlines=(ref13=chartOpts!=null?chartOpts.gridlines:void 0)!=null?ref13:0;gridcolor=(ref14=chartOpts!=null?chartOpts.gridcolor:void 0)!=null?ref14:"white";gridwidth=(ref15=chartOpts!=null?chartOpts.gridwidth:void 0)!=null?ref15:1;tipclass=(ref16=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref16:"tooltip";xscale=null;yscale=null;pscale=null;points=null;indtip=null;svg=null;chart=function chart(selection,data){var d,first,flag_length_not_3,flag_out_of_range,flag_sum_not_1,frame,framefunc,g,gr,group,i,indID,indices,j,len,n,ngroup,p,p1,p2,p3,p4,plot_height,plot_width,ref17,ref18,second,sum,v,vertices,vv,xlim,xy,ylim;margin=d3panels.check_listarg_v_default(margin,{left:60,top:40,right:60,bottom:10});if(data.p==null){d3panels.displayError("trichart: data.p is missing")}p=function(){var j,len,ref17,results;ref17=data.p;results=[];for(j=0,len=ref17.length;j<len;j++){v=ref17[j];results.push(d3panels.missing2null(v))}return results}();flag_length_not_3=false;flag_sum_not_1=false;flag_out_of_range=false;for(j=0,len=p.length;j<len;j++){v=p[j];if(v.length!==3){flag_length_not_3=true}sum=d3panels.sumArray(v);if(d3panels.abs(sum-1)>1e-6){flag_sum_not_1}if(d3panels.sumArray(function(){var k,len1,results;results=[];for(k=0,len1=v.length;k<len1;k++){vv=v[k];results.push(vv<0||vv>1)}return results}())>0){flag_out_of_range=true}}if(flag_length_not_3){d3panels.displayError("trichart: points not all of length 3")}if(flag_sum_not_1){d3panels.displayError("trichart: points not all summing to 1")}if(flag_out_of_range){d3panels.displayError("trichart: points not all in [0,1]")}n=p.length;indID=(ref17=data!=null?data.indID:void 0)!=null?ref17:function(){var results;results=[];for(i in p){results.push(+i+1)}return results}();if(indID.length!==n){d3panels.displayError("trichart: data.indID.length ("+indID.length+") != data.p.length ("+n+")")}group=(ref18=data!=null?data.group:void 0)!=null?ref18:function(){var results;results=[];for(i in p){results.push(1)}return results}();group=d3panels.expand2vector(group,n);ngroup=d3.max(group);group=function(){var k,len1,results;results=[];for(k=0,len1=group.length;k<len1;k++){g=group[k];results.push(g!=null?g-1:g)}return results}();if(d3panels.sumArray(function(){var k,len1,results;results=[];for(k=0,len1=group.length;k<len1;k++){g=group[k];results.push(g<0||g>ngroup-1)}return results}())>0){d3panels.displayError("add_points: group values out of range");console.log("ngroup: "+ngroup);console.log("distinct groups: "+d3panels.unique(group))}if(group.length!==n){d3panels.displayError("trichart: data.group.length ("+group.length+") != data.p.length ("+n+")")}pointcolor=pointcolor!=null?pointcolor:d3panels.selectGroupColors(ngroup,"dark");pointcolor=d3panels.expand2vector(pointcolor,ngroup);if(pointcolor.length<ngroup){d3panels.displayError("add_points: pointcolor.length ("+pointcolor.length+") < ngroup ("+ngroup+")")}xlim=[0,2/Math.sqrt(3)];ylim=[0,1];plot_height=height-margin.top-margin.bottom;plot_width=width-margin.left-margin.right;if(plot_height>plot_width/xlim[1]){d=plot_height-plot_width/xlim[1];margin.top+=d/2;margin.bottom+=d/2;plot_height-=d}else{d=plot_width-plot_height*xlim[1];margin.left+=d/2;margin.right+=d/2;plot_width-=d}xscale=d3.scaleLinear().domain(xlim).range([margin.left,margin.left+plot_width]);yscale=d3.scaleLinear().domain(ylim).range([plot_height+margin.top,margin.top]);pscale=function pscale(p){sum=d3panels.sumArray(p);return{x:xscale((p[0]*2+p[1])/Math.sqrt(3)/sum),y:yscale(p[1]/sum)}};xy=function(){var k,len1,results;results=[];for(k=0,len1=p.length;k<len1;k++){v=p[k];results.push({x:(v[0]*2+v[1])/Math.sqrt(3),y:v[1]})}return results}();svg=selection.append("svg");svg.attr("width",width).attr("height",height).attr("class","d3panels");frame=svg.append("g").attr("id","frame");vertices=[{x:xlim[0],y:ylim[0]},{x:xlim[1]/2,y:ylim[1]},{x:xlim[1],y:ylim[0]}];framefunc=d3.line().x(function(d){return xscale(vertices[d].x)}).y(function(d){return yscale(vertices[d].y)});indices=function(){var results;results=[];for(i in vertices){results.push(+i)}return results}().concat(0);frame.append("path").datum(indices).attr("d",framefunc).attr("fill",rectcolor).attr("stroke",boxcolor).attr("stroke-width",boxwidth);if(gridlines>0){gr=function(){var results=[];for(var k=1;1<=gridlines?k<=gridlines:k>=gridlines;1<=gridlines?k++:k--){results.push(k)}return results}.apply(this).map(function(i){return i/(gridlines+1)});p1=gr.map(function(x){return[x,0,1-x]});p2=gr.map(function(x){return[x,1-x,0]});p3=gr.map(function(x){return[0,1-x,x]});p4=gr.map(function(x){return[1-x,0,x]});first=p1.concat(p2).concat(p3);second=p2.concat(p3).concat(p4);g=frame.append("g").attr("class","gridlines").selectAll("empty").data(first).enter().append("line").attr("x1",function(d){return pscale(d).x}).attr("y1",function(d){return pscale(d).y}).attr("x2",function(d,i){return pscale(second[i]).x}).attr("y2",function(d,i){return pscale(second[i]).y}).attr("stroke",gridcolor).attr("stroke-width",gridwidth).attr("shape-rendering","crispEdges").style("pointer-events","none").attr("fill","none");frame.append("path").datum(indices).attr("d",framefunc).attr("fill","none").attr("stroke",boxcolor).attr("stroke-width",boxwidth)}frame.append("g").attr("class","title").append("text").text(title).attr("x",plot_width/2+margin.left).attr("y",margin.top-titlepos);frame.append("g").attr("id","labels").selectAll("empty").data(vertices).enter().append("text").attr("x",function(d,i){return xscale(d.x)+[-1,+1,+1][i]*labelpos}).attr("y",function(d){return yscale(d.y)}).style("dominant-baseline","middle").style("text-anchor",function(d,i){return["end","start","start"][i]}).text(function(d,i){return labels[i]});points=svg.append("g").attr("id","points").selectAll("empty").data(p).enter().append("circle").attr("r",pointsize).attr("cx",function(d){return pscale(d).x}).attr("cy",function(d){return pscale(d).y}).attr("fill",function(d,i){return pointcolor[group[i]]}).attr("stroke",pointstroke).attr("stroke-width",1);return indtip=d3panels.tooltip_create(d3.select("body"),points,{tipclass:tipclass},function(d,i){return indID[i]})};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.pscale=function(){return pscale};chart.points=function(){return points};chart.indtip=function(){return indtip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_destroy(indtip);return null};return chart};"use strict";d3panels.histchart=function(chartOpts){var chart,curves,density,indtip,linecolor,linecolorhilit,linewidth,linewidthhilit,ref,ref1,ref10,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,rotate_ylab,svg,tipclass,xlab,xlim,xscale,ylab,ylim,yscale;if(chartOpts==null){chartOpts={}}xlim=(ref=chartOpts!=null?chartOpts.xlim:void 0)!=null?ref:null;ylim=(ref1=chartOpts!=null?chartOpts.ylim:void 0)!=null?ref1:null;xlab=(ref2=chartOpts!=null?chartOpts.xlab:void 0)!=null?ref2:"";ylab=(ref3=chartOpts!=null?chartOpts.ylab:void 0)!=null?ref3:"";rotate_ylab=(ref4=chartOpts!=null?chartOpts.rotate_ylab:void 0)!=null?ref4:null;linecolor=(ref5=chartOpts!=null?chartOpts.linecolor:void 0)!=null?ref5:null;linecolorhilit=(ref6=chartOpts!=null?chartOpts.linecolorhilit:void 0)!=null?ref6:null;linewidth=(ref7=chartOpts!=null?chartOpts.linewidth:void 0)!=null?ref7:2;linewidthhilit=(ref8=chartOpts!=null?chartOpts.linewidthhilit:void 0)!=null?ref8:2;density=(ref9=chartOpts!=null?chartOpts.density:void 0)!=null?ref9:true;tipclass=(ref10=chartOpts!=null?chartOpts.tipclass:void 0)!=null?ref10:"tooltip";xscale=null;yscale=null;curves=null;indtip=null;svg=null;chart=function chart(selection,data){var add_curves,breaks,brlim,d,f,freq,i,j,k,l,len,len1,maxn,maxpos,myframe,n_ind,p,path_data,path_x,path_y,pt,ref11,x,xv,xx;if(data.x==null){d3panels.displayError("histchart: data.x is missing")}x=data.x;data.group=function(){var results;results=[];for(i in x){results.push(+i+1)}return results}();n_ind=x.length;if(data.breaks==null){maxn=d3.max(function(){var k,len,results;results=[];for(k=0,len=x.length;k<len;k++){xv=x[k];results.push(xv.length)}return results}());data.breaks=[2*Math.ceil(Math.sqrt(maxn)+1)]}breaks=d3panels.forceAsArray(data.breaks);xlim=xlim!=null?xlim:d3panels.matrixExtent(x);if(breaks.length===1){breaks=d3panels.calc_breaks(breaks[0],xlim[0],xlim[1])}brlim=[d3.min(breaks)-1e-6,d3.max(breaks)+1e-6];x=function(){var k,len,results;results=[];for(k=0,len=x.length;k<len;k++){xx=x[k];results.push(function(){var l,len1,results1;results1=[];for(l=0,len1=xx.length;l<len1;l++){xv=xx[l];if(xv>=brlim[0]&xv<=brlim[1]){results1.push(xv)}}return results1}())}return results}();freq=function(){var k,len,results;results=[];for(k=0,len=x.length;k<len;k++){xv=x[k];results.push(d3panels.calc_freq(xv,breaks,!density))}return results}();maxpos=[];for(k=0,len=freq.length;k<len;k++){f=freq[k];pt={x:breaks[1],y:f[0]};ref11=d3.range(f.length);for(l=0,len1=ref11.length;l<len1;l++){j=ref11[l];if(f[j]>pt.y){pt.y=f[j];pt.x=breaks[j+1]}}maxpos.push(pt)}ylim=ylim!=null?ylim:[0,d3panels.matrixMax(freq)*1.05];chartOpts.xlim=xlim;chartOpts.ylim=ylim;chartOpts.xNA=false;chartOpts.yNA=false;chartOpts.xlab=xlab;chartOpts.ylab=ylab;chartOpts.rotate_ylab=rotate_ylab;myframe=d3panels.panelframe(chartOpts);myframe(selection);svg=myframe.svg();xscale=myframe.xscale();yscale=myframe.yscale();path_data=function(){var len2,m,results;results=[];for(m=0,len2=freq.length;m<len2;m++){f=freq[m];results.push(d3panels.calc_hist_path(f,breaks))}return results}();path_x=function(){var len2,m,results;results=[];for(m=0,len2=path_data.length;m<len2;m++){p=path_data[m];results.push(function(){var len3,n,results1;results1=[];for(n=0,len3=p.length;n<len3;n++){d=p[n];results1.push(d.x)}return results1}())}return results}();path_y=function(){var len2,m,results;results=[];for(m=0,len2=path_data.length;m<len2;m++){p=path_data[m];results.push(function(){var len3,n,results1;results1=[];for(n=0,len3=p.length;n<len3;n++){d=p[n];results1.push(d.y)}return results1}())}return results}();add_curves=d3panels.add_curves({linecolor:linecolor,linecolorhilit:linecolorhilit,linewidth:linewidth,linewidthhilit:linewidthhilit,tipclass:tipclass});add_curves(myframe,{x:path_x,y:path_y,indID:data.indID,group:data.group});curves=add_curves.curves();indtip=add_curves.indtip();return myframe.box().raise()};chart.xscale=function(){return xscale};chart.yscale=function(){return yscale};chart.curves=function(){return curves};chart.indtip=function(){return indtip};chart.svg=function(){return svg};chart.remove=function(){svg.remove();d3panels.tooltip_dstroy(indtip);return null};return chart};"use strict";d3panels.slider=function(chartOpts){var buttoncolor,buttondotcolor,buttondotsize,buttonround,buttonsize,buttonstroke,_chart,height,margin,nticks,rectcolor,rectheight,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,slider_svg,stopindex,textsize,tickgap,tickheight,ticks,ticks_at_stops,value,width;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:80;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:25,right:25,inner:0,top:40,bottom:40};rectheight=(ref3=chartOpts!=null?chartOpts.rectheight:void 0)!=null?ref3:10;rectcolor=(ref4=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref4:"#ccc";buttonsize=(ref5=chartOpts!=null?chartOpts.buttonsize:void 0)!=null?ref5:rectheight*2;buttoncolor=(ref6=chartOpts!=null?chartOpts.buttoncolor:void 0)!=null?ref6:"#eee";buttonstroke=(ref7=chartOpts!=null?chartOpts.buttonstroke:void 0)!=null?ref7:"black";buttonround=(ref8=chartOpts!=null?chartOpts.buttonround:void 0)!=null?ref8:buttonsize*.2;buttondotcolor=(ref9=chartOpts!=null?chartOpts.buttondotcolor:void 0)!=null?ref9:"slateblue";buttondotsize=(ref10=chartOpts!=null?chartOpts.buttondotsize:void 0)!=null?ref10:buttonsize/4;tickheight=(ref11=chartOpts!=null?chartOpts.tickheight:void 0)!=null?ref11:10;tickgap=(ref12=chartOpts!=null?chartOpts.tickgap:void 0)!=null?ref12:tickheight/2;textsize=(ref13=chartOpts!=null?chartOpts.textsize:void 0)!=null?ref13:14;nticks=(ref14=chartOpts!=null?chartOpts.nticks:void 0)!=null?ref14:5;ticks=(ref15=chartOpts!=null?chartOpts.ticks:void 0)!=null?ref15:null;ticks_at_stops=(ref16=chartOpts!=null?chartOpts.ticks_at_stops:void 0)!=null?ref16:true;value=0;stopindex=0;slider_svg=null;_chart=function chart(selection,callback,range,stops,initial_value){var button,clamp_pixels,dragged,end_drag,xcscale,xscale;margin=d3panels.check_listarg_v_default(margin,{left:25,right:25,inner:0,top:40,bottom:40});margin.left+=margin.inner;margin.right+=margin.inner;if(range==null){range=[margin.left,width-margin.right]}if(margin.top!=null&&margin.top+margin.bottom>0){margin.top=height*margin.top/(margin.top+margin.bottom)}else{margin.top=height/2}if(initial_value!=null){value=initial_value;if(value<range[0]){value=range[0]}if(value>range[1]){value=range[1]}if(stops!=null){stopindex=d3panels.index_of_nearest(value,stops)}if(stops!=null){value=stops[stopindex]}}else{if(stops!=null){stopindex=Math.floor(Math.random()*stops.length);value=stops[stopindex]}else{value=(range[1]-range[0])*Math.random()+range[0]}}slider_svg=selection.insert("svg").attr("height",height).attr("width",width);xcscale=d3.scaleLinear().range([margin.left,width-margin.right]).domain(range).clamp(true);xscale=function xscale(d){if(stops!=null){return xcscale(stops[d3panels.index_of_nearest(d,stops)])}return xcscale(d)};clamp_pixels=function clamp_pixels(pixels,interval){if(pixels<interval[0]){return interval[0]}if(pixels>interval[1]){return interval[1]}return pixels};slider_svg.insert("rect").attr("x",margin.left).attr("y",margin.top-rectheight/2).attr("rx",rectheight*.3).attr("ry",rectheight*.3).attr("width",width-margin.left-margin.right).attr("height",rectheight).attr("fill",rectcolor);if(ticks==null){ticks=xcscale.ticks(nticks)}slider_svg.selectAll("empty").data(ticks).enter().insert("line").attr("x1",function(d){return xcscale(d)}).attr("x2",function(d){return xcscale(d)}).attr("y1",margin.top+rectheight/2+tickgap).attr("y2",margin.top+rectheight/2+tickgap+tickheight).attr("stroke","black").attr("shape-rendering","crispEdges");slider_svg.selectAll("empty").data(ticks).enter().insert("text").attr("x",function(d){return xcscale(d)}).attr("y",margin.top+rectheight/2+tickgap*2+tickheight).text(function(d){return d}).style("font-size",textsize).style("dominant-baseline","hanging").style("text-anchor","middle").style("pointer-events","none").style("-webkit-user-select","none").style("-moz-user-select","none").style("-ms-user-select","none");if(stops!=null&&ticks_at_stops){slider_svg.selectAll("empty").data(stops).enter().insert("line").attr("x1",function(d){return xcscale(d)}).attr("x2",function(d){return xcscale(d)}).attr("y1",margin.top-rectheight/2-tickgap).attr("y2",margin.top-rectheight/2-tickgap-tickheight).attr("stroke","black").attr("shape-rendering","crispEdges")}button=slider_svg.insert("g").attr("id","button").attr("transform","translate("+xscale(value)+",0)");button.insert("rect").attr("x",-buttonsize/2).attr("y",margin.top-buttonsize/2).attr("height",buttonsize).attr("width",buttonsize).attr("rx",buttonround).attr("ry",buttonround).attr("stroke",buttonstroke).attr("stroke-width",2).attr("fill",buttoncolor);button.insert("circle").attr("cx",0).attr("cy",margin.top).attr("r",buttondotsize).attr("fill",buttondotcolor);dragged=function dragged(d){var clamped_pixels,pixel_value;pixel_value=d3.event.x;clamped_pixels=clamp_pixels(pixel_value,[margin.left,width-margin.right]);value=xcscale.invert(clamped_pixels);d3.select(this).attr("transform","translate("+xcscale(value)+",0)");if(stops!=null){stopindex=d3panels.index_of_nearest(value,stops);value=stops[stopindex]}if(callback!=null){return callback(_chart)}};end_drag=function end_drag(d){var clamped_pixels,pixel_value;pixel_value=d3.event.x;clamped_pixels=clamp_pixels(pixel_value,[margin.left,width-margin.right]);value=xcscale.invert(clamped_pixels);if(stops!=null){stopindex=d3panels.index_of_nearest(value,stops);value=stops[stopindex]}if(callback!=null){callback(_chart)}return d3.select(this).attr("transform","translate("+xcscale(value)+",0)")};button.call(d3.drag().on("drag",dragged).on("end",end_drag));if(callback!=null){return callback(_chart)}};_chart.value=function(){return value};_chart.stopindex=function(){return stopindex};_chart.remove=function(){return slider_svg.remove()};return _chart};"use strict";d3panels.double_slider=function(chartOpts){var buttoncolor,buttondotcolor,buttondotsize,buttonround,buttonsize,buttonstroke,_chart,height,margin,nticks,rectcolor,rectheight,ref,ref1,ref10,ref11,ref12,ref13,ref14,ref15,ref16,ref2,ref3,ref4,ref5,ref6,ref7,ref8,ref9,slider_svg,stopindex,textsize,tickgap,tickheight,ticks,ticks_at_stops,value,width;if(chartOpts==null){chartOpts={}}width=(ref=chartOpts!=null?chartOpts.width:void 0)!=null?ref:800;height=(ref1=chartOpts!=null?chartOpts.height:void 0)!=null?ref1:80;margin=(ref2=chartOpts!=null?chartOpts.margin:void 0)!=null?ref2:{left:25,right:25,inner:0,top:40,bottom:40};rectheight=(ref3=chartOpts!=null?chartOpts.rectheight:void 0)!=null?ref3:10;rectcolor=(ref4=chartOpts!=null?chartOpts.rectcolor:void 0)!=null?ref4:"#ccc";buttonsize=(ref5=chartOpts!=null?chartOpts.buttonsize:void 0)!=null?ref5:rectheight*2;buttoncolor=(ref6=chartOpts!=null?chartOpts.buttoncolor:void 0)!=null?ref6:"#eee";buttonstroke=(ref7=chartOpts!=null?chartOpts.buttonstroke:void 0)!=null?ref7:"black";buttonround=(ref8=chartOpts!=null?chartOpts.buttonround:void 0)!=null?ref8:buttonsize*.2;buttondotcolor=(ref9=chartOpts!=null?chartOpts.buttondotcolor:void 0)!=null?ref9:["slateblue","orchid"];buttondotsize=(ref10=chartOpts!=null?chartOpts.buttondotsize:void 0)!=null?ref10:buttonsize/4;tickheight=(ref11=chartOpts!=null?chartOpts.tickheight:void 0)!=null?ref11:10;tickgap=(ref12=chartOpts!=null?chartOpts.tickgap:void 0)!=null?ref12:tickheight/2;textsize=(ref13=chartOpts!=null?chartOpts.textsize:void 0)!=null?ref13:14;nticks=(ref14=chartOpts!=null?chartOpts.nticks:void 0)!=null?ref14:5;ticks=(ref15=chartOpts!=null?chartOpts.ticks:void 0)!=null?ref15:null;ticks_at_stops=(ref16=chartOpts!=null?chartOpts.ticks_at_stops:void 0)!=null?ref16:true;value=[0,0];stopindex=[0,0];slider_svg=null;if(!Array.isArray(buttoncolor)){buttoncolor=[buttoncolor,buttoncolor]}if(!Array.isArray(buttonstroke)){buttonstroke=[buttonstroke,buttonstroke]}if(!Array.isArray(buttondotcolor)){buttondotcolor=[buttondotcolor,buttondotcolor]}_chart=function chart(selection,callback1,callback2,range,stops,initial_value){var buttons,callbacks,clamp_pixels,dragged,end_drag,start_drag,xcscale,xscale;margin=d3panels.check_listarg_v_default(margin,{left:25,right:25,inner:0,top:40,bottom:40});callbacks=[callback1,callback2];margin.left+=margin.inner;margin.right+=margin.inner;if(range==null){range=[margin.left,width-margin.right]}if(margin.top!=null&&margin.top+margin.bottom>0){margin.top=height*margin.top/(margin.top+margin.bottom)}else{margin.top=height/2}if(initial_value!=null){value=initial_value.map(function(d){if(d<range[0]){return range[0]}if(d>range[1]){return range[1]}return d});if(stops!=null){stopindex=value.map(function(d){return d3panels.index_of_nearest(d,stops)})}if(stops!=null){value=stopindex.map(function(i){return stops[i]})}}else{if(stops!=null){stopindex=[0,1].map(function(i){return Math.floor(Math.random()*stops.length)});value=stopindex.map(function(i){return stops[i]})}else{value=[0,1].map(function(i){return(range[1]-range[0])*Math.random()+range[0]})}}slider_svg=selection.insert("svg").attr("height",height).attr("width",width);xcscale=d3.scaleLinear().range([margin.left,width-margin.right]).domain(range).clamp(true);xscale=function xscale(d){if(stops!=null){return xcscale(stops[d3panels.index_of_nearest(d,stops)])}return xcscale(d)};clamp_pixels=function clamp_pixels(pixels,interval){if(pixels<interval[0]){return interval[0]}if(pixels>interval[1]){return interval[1]}return pixels};slider_svg.insert("rect").attr("x",margin.left).attr("y",margin.top-rectheight/2).attr("rx",rectheight*.3).attr("ry",rectheight*.3).attr("width",width-margin.left-margin.right).attr("height",rectheight).attr("fill",rectcolor);if(ticks==null){ticks=xcscale.ticks(nticks)}slider_svg.selectAll("empty").data(ticks).enter().insert("line").attr("x1",function(d){return xcscale(d)}).attr("x2",function(d){return xcscale(d)}).attr("y1",margin.top+rectheight/2+tickgap).attr("y2",margin.top+rectheight/2+tickgap+tickheight).attr("stroke","black").attr("shape-rendering","crispEdges");slider_svg.selectAll("empty").data(ticks).enter().insert("text").attr("x",function(d){return xcscale(d)}).attr("y",margin.top+rectheight/2+tickgap*2+tickheight).text(function(d){return d}).style("font-size",textsize).style("dominant-baseline","hanging").style("text-anchor","middle").style("pointer-events","none").style("-webkit-user-select","none").style("-moz-user-select","none").style("-ms-user-select","none");if(stops!=null&&ticks_at_stops){slider_svg.selectAll("empty").data(stops).enter().insert("line").attr("x1",function(d){return xcscale(d)}).attr("x2",function(d){return xcscale(d)}).attr("y1",margin.top-rectheight/2-tickgap).attr("y2",margin.top-rectheight/2-tickgap-tickheight).attr("stroke","black").attr("shape-rendering","crispEdges")}buttons=[0,1].map(function(i){return slider_svg.insert("g").attr("id","button"+(i+1)).attr("transform",function(d){return"translate("+xscale(value[i])+",0)"})});[0,1].map(function(i){buttons[i].insert("rect").attr("x",-buttonsize/2).attr("y",margin.top-buttonsize/2).attr("height",buttonsize).attr("width",buttonsize).attr("rx",buttonround).attr("ry",buttonround).attr("stroke",buttonstroke[i]).attr("stroke-width",2).attr("fill",buttoncolor[i]);return buttons[i].insert("circle").attr("cx",0).attr("cy",margin.top).attr("r",buttondotsize).attr("fill",buttondotcolor[i])});start_drag=function start_drag(i){return function(d){return buttons[i].raise()}};dragged=function dragged(i){return function(d){var clamped_pixels,pixel_value;pixel_value=d3.event.x;clamped_pixels=clamp_pixels(pixel_value,[margin.left,width-margin.right]);value[i]=xcscale.invert(clamped_pixels);d3.select(this).attr("transform","translate("+xcscale(value[i])+",0)");if(stops!=null){stopindex[i]=d3panels.index_of_nearest(value[i],stops);value[i]=stops[stopindex[i]]}if(callbacks[i]!=null){return callbacks[i](_chart)}}};end_drag=function end_drag(i){return function(d){var clamped_pixels,pixel_value;pixel_value=d3.event.x;clamped_pixels=clamp_pixels(pixel_value,[margin.left,width-margin.right]);value[i]=xcscale.invert(clamped_pixels);if(stops!=null){stopindex[i]=d3panels.index_of_nearest(value[i],stops);value[i]=stops[stopindex[i]]}if(callbacks[i]!=null){callbacks[i](_chart)}return d3.select(this).attr("transform","translate("+xcscale(value[i])+",0)")}};return[0,1].map(function(i){buttons[i].call(d3.drag().on("start",start_drag(i)).on("drag",dragged(i)).on("end",end_drag(i)));if(callbacks[i]!=null){return callbacks[i](_chart)}})};_chart.value=function(){return value};_chart.stopindex=function(){return stopindex};_chart.remove=function(){return slider_svg.remove()};return _chart};"use strict";d3panels.tooltip_create=function(selection,objects,options,tooltip_func){var direction,fill,fontcolor,fontsize,in_duration,out_duration,pad,ref,ref1,ref2,ref3,ref4,tipclass,tipdiv,tipgroup,triChar,tridiv;tipclass=(ref=options!=null?options.tipclass:void 0)!=null?ref:"d3panels-tooltip";direction=(ref1=options!=null?options.direction:void 0)!=null?ref1:"east";out_duration=(ref2=options!=null?options.out_duration:void 0)!=null?ref2:1e3;in_duration=(ref3=options!=null?options.in_duration:void 0)!=null?ref3:0;pad=(ref4=options!=null?options.pad:void 0)!=null?ref4:8;fill=options!=null?options.fill:void 0;fontcolor=options!=null?options.fontcolor:void 0;fontsize=options!=null?options.fontsize:void 0;tipgroup=selection.append("g").attr("class","d3panels-tooltip "+tipclass).style("opacity",0).datum({direction:direction,pad:pad});tipdiv=tipgroup.append("div").attr("class","d3panels-tooltip "+tipclass);if(direction==="east"){triChar="◀"}else if(direction==="west"){triChar="▶"}else if(direction==="north"){triChar="▼"}else if(direction==="south"){triChar="▲"}else{d3panels.displayError("tooltip_create: invalid direction ("+direction+")")}tridiv=tipgroup.append("div").attr("class","d3panels-tooltip-tri "+tipclass).html(triChar);if(fill!=null){tipdiv.style("background",fill)}if(fontcolor!=null){tipdiv.style("color",fontcolor)}if(fontsize!=null){tipdiv.style("font-size",fontsize+"px")}if(fill!=null){tridiv.style("color",fill)}if(fontsize!=null){tridiv.style("font-size",fontsize+"px")}objects.on("mouseover."+tipclass,function(d,i){var mouseX,mouseY;mouseX=d3.event.pageX*1;mouseY=d3.event.pageY*1;tipdiv.html(tooltip_func(d,i));d3panels.tooltip_move(tipgroup,mouseX,mouseY);return d3panels.tooltip_show(tipgroup,in_duration)});objects.on("mouseout."+tipclass,function(d){return d3panels.tooltip_hide(tipgroup,out_duration)});return tipgroup};d3panels.tooltip_move=function(tipgroup,x,y){var direction,divpad,fontsize,pad,posX,posY,shiftX,shiftY,tipbox_height,tipbox_width,tipdiv,triX,triY,tridiv;tipdiv=tipgroup.select("div.d3panels-tooltip");tridiv=tipgroup.select("div.d3panels-tooltip-tri");tipbox_height=tipdiv.node().getBoundingClientRect().height*1;tipbox_width=tipdiv.node().getBoundingClientRect().width*1;fontsize=tridiv.style("font-size").replace("px","")*1;pad=tipgroup.datum().pad*1+fontsize;direction=tipgroup.datum().direction;shiftX=shiftY=0;if(direction==="east"){posX=x+pad;posY=y-tipbox_height/2;divpad=tipdiv.style("padding-left").replace("px","")*1;shiftX=-fontsize-divpad;shiftY=tipbox_height/2-fontsize/2}else if(direction==="west"){posX=x-tipbox_width*1-pad;posY=y-tipbox_height/2;divpad=tipdiv.style("padding-right").replace("px","")*1;shiftX=tipbox_width-fontsize+divpad;shiftY=tipbox_height/2-fontsize/2}else if(direction==="north"){posX=x-tipbox_width/2;posY=y-tipbox_height-pad;divpad=tipdiv.style("padding-bottom").replace("px","")*1;shiftX=tipbox_width/2-fontsize;shiftY=tipbox_height+divpad/2-fontsize/2}else if(direction==="south"){posX=x-tipbox_width/2;posY=y+pad;divpad=tipdiv.style("padding-top").replace("px","")*1;shiftX=+tipbox_width/2-fontsize;shiftY=-fontsize}tipdiv.style("left",posX+"px").style("top",posY+"px");triX=posX+shiftX;triY=posY+shiftY;return tridiv.style("left",triX+"px").style("top",triY+"px").style("width",tipbox_width).style("height",tipbox_height)};d3panels.tooltip_text=function(tipgroup,text){return tipgroup.select("div.d3panels-tooltip").html(text)};d3panels.tooltip_show=function(tipgroup,duration){return tipgroup.transition().duration(duration).style("opacity",1)};d3panels.tooltip_hide=function(tipgroup,duration){return tipgroup.transition().duration(duration).style("opacity",0)};d3panels.tooltip_destroy=function(tipgroup){return tipgroup.remove()};if(typeof define==="function"&&define.amd)this.d3panels=d3panels,define(d3panels);else if(typeof module==="object"&&module.exports)module.exports=d3panels;else this.d3panels=d3panels}();
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/dataset_select_menu_orig.js b/gn2/wqflask/static/new/javascript/dataset_select_menu_orig.js
new file mode 100644
index 00000000..25a703e6
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/dataset_select_menu_orig.js
@@ -0,0 +1,330 @@
+var apply_default, check_search_term, dataset_info, group_info, make_default, open_window, populate_dataset, populate_group, populate_species, populate_type, process_json, redo_dropdown;
+process_json = function(data) {
+  window.jdata = data;
+  populate_species();
+  if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
+    return apply_default();
+  }
+};
+
+range = function(size, startAt=0) {
+  return [...Array(size).keys()].map(idx => idx + startAt);
+};
+
+indicate_error = function (jqXHR, textStatus, errorThrown) {
+  errorElement = document.createElement("span");
+  errorElement.setAttribute("class", "alert-danger");
+  errorText = document.createTextNode(
+	  "There was an error retrieving and setting the menu. Try again later.");
+  errorElement.appendChild(errorText);
+  if (document.getElementById("search")){
+    form = document.getElementById("search").getElementsByTagName("form")[0];
+    form.prepend(errorElement);
+    disable_element = function(select) {
+      select.setAttribute("disabled", "disabled");
+    };
+    Array.from(form.getElementsByTagName("select")).forEach(disable_element);
+    Array.from(form.getElementsByTagName("textarea")).forEach(disable_element);
+  }
+};
+
+defaultStatusCodeFunctions = range(200, 400).reduce(
+  function(acc, scode) {
+	  acc[scode] = indicate_error;
+	  return acc;
+  }, {});
+
+if (typeof gn_server_url === 'undefined'){
+  gn_server_url = $("#search form").attr("data-gn_server_url")
+}
+
+$.ajax(gn_server_url +'/menu/generate/json', {
+  dataType: 'json',
+  success: process_json,
+  error: indicate_error,
+  statusCode: {
+	  ...defaultStatusCodeFunctions,
+  }
+});
+
+populate_species = function() {
+  var species_list;
+  species_list = this.jdata.species;
+  redo_dropdown($('#species'), species_list);
+  return populate_group();
+};
+window.populate_species = populate_species;
+
+populate_group = function() {
+  var group_list, species;
+  species = $('#species').val();
+  group_list = this.jdata.groups[species];
+  for (_i = 0, _len = group_list.length; _i < (_len - 1); _i++) {
+     if (group_list[_i][0] == "BXD300"){
+         group_list.splice(_i, 1)
+     }
+  }
+  redo_dropdown($('#group'), group_list);
+  if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
+    return populate_type();
+  }
+};
+window.populate_group = populate_group;
+
+populate_type = function() {
+  var group, species, type_list;
+  species = $('#species').val();
+  group = $('#group').val();
+  type_list = this.jdata.types[species][group];
+  redo_dropdown($('#type'), type_list);
+  return populate_dataset();
+};
+window.populate_type = populate_type;
+
+populate_dataset = function() {
+  var dataset_list, group, species, type;
+  species = $('#species').val();
+  group = $('#group').val();
+  type = $('#type').val();
+  dataset_list = this.jdata.datasets[species][group][type];
+  return redo_dropdown($('#dataset'), dataset_list);
+};
+window.populate_dataset = populate_dataset;
+
+redo_dropdown = function(dropdown, items) {
+  var item, _i, _len, _results;
+  dropdown.empty();
+  _results = [];
+
+  if (dropdown.attr('id') == "species"){
+    species_family_list = [];
+    for (_i = 0, _len = items.length; _i < _len; _i++) {
+      item = items[_i];
+      species_family = item[2].toString()
+      species_family_list.push([item[0], item[1], species_family])
+    }
+
+    current_family = ""
+    this_opt_group = null
+    for (_i = 0, _len = species_family_list.length; _i < _len; _i++) {
+      item = species_family_list[_i];
+      if (item[2] != "None" && current_family == ""){
+        current_family = item[2]
+        this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+      } else if (current_family != "" && item[2] == current_family){
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == species_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
+        current_family = item[2]
+        _results.push(dropdown.append(this_opt_group))
+        this_opt_group = $("<optgroup label=\"" + current_family + "\">")
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == species_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else if (current_family != "" && this_opt_group != null && item[2] == "None"){
+        _results.push(dropdown.append(this_opt_group))
+        current_family = ""
+        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+      } else {
+        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+      }
+    }
+  } else if (dropdown.attr('id') == "group"){
+    group_family_list = [];
+    for (_i = 0, _len = items.length; _i < _len; _i++) {
+      item = items[_i];
+      group_family = item[2].toString().split(":")[1]
+      group_family_list.push([item[0], item[1], group_family])
+    }
+
+    current_family = ""
+    this_opt_group = null
+    for (_i = 0, _len = group_family_list.length; _i < _len; _i++) {
+      item = group_family_list[_i];
+      if (item[2] != "None" && current_family == ""){
+        current_family = item[2]
+        this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+      } else if (current_family != "" && item[2] == current_family){
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == group_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
+        current_family = item[2]
+        _results.push(dropdown.append(this_opt_group))
+        this_opt_group = $("<optgroup label=\"" + current_family + "\">")
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == group_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else if (current_family != "" && this_opt_group != null && item[2] == "None"){
+        _results.push(dropdown.append(this_opt_group))
+        current_family = ""
+        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+      } else {
+        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+      }
+    }
+  } else if (dropdown.attr('id') == "type"){
+    type_family_list = [];
+    for (_i = 0, _len = items.length; _i < _len; _i++) {
+      item = items[_i];
+      type_family_list.push([item[0], item[1], item[2]])
+    }
+
+    current_family = ""
+    this_opt_group = null
+    for (_i = 0, _len = type_family_list.length; _i < _len; _i++) {
+      item = type_family_list[_i];
+      if (item[2] != "None" && current_family == ""){
+        current_family = item[2]
+        this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == type_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else if (current_family != "" && item[2] == current_family){
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == type_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
+        current_family = item[2]
+        _results.push(dropdown.append(this_opt_group))
+        this_opt_group = $("<optgroup label=\"" + current_family + "\">")
+        this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+        if (_i == type_family_list.length - 1){
+          _results.push(dropdown.append(this_opt_group))
+        }
+      } else {
+        _results.push(dropdown.append(this_opt_group))
+        current_family = ""
+        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+      } 
+    }
+  } else {
+    for (_i = 0, _len = items.length; _i < _len; _i++) {
+      item = items[_i];
+      if (item.length > 2){
+        _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2])));
+      } else {
+        _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+      }
+    }
+  }
+
+  return _results;
+};
+
+$('#species').change((function(_this) {
+  return function() {
+    return populate_group();
+  };
+})(this));
+
+$('#group').change((function(_this) {
+  return function() {
+    if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
+      return populate_type();
+    }
+    else {
+      return false
+    }
+  };
+})(this));
+
+$('#type').change((function(_this) {
+  return function() {
+    return populate_dataset();
+  };
+})(this));
+
+open_window = function(url, name) {
+  var options;
+  options = "menubar=yes,toolbar=yes,titlebar=yes,location=yes,resizable=yes,status=yes,scrollbars=yes,directories=yes,width=900";
+  return open(url, name, options).focus();
+};
+
+group_info = function() {
+  var group, species, url;
+  species = $('#species').val();
+  group = $('#group').val();
+  url = "http://gn1.genenetwork.org/" + species + "Cross.html#" + group;
+  return open_window(url, "_blank");
+};
+$('#group_info').click(group_info);
+
+dataset_info = function() {
+  var dataset, url;
+  accession_id = $('#dataset option:selected').data("id");
+  if (accession_id != "None") {
+    url = "https://info.genenetwork.org/infofile/source.php?GN_AccesionId=" + accession_id
+  } else {
+    species = $('#species').val();
+    group = $('#group').val();
+    url = "https://info.genenetwork.org/species/source.php?SpeciesName=" + species + "&InbredSetName=" + group
+  }
+  return open_window(url, "_blank");
+};
+$('#dataset_info').click(dataset_info);
+
+make_default = function() {
+  var holder, item, jholder, _i, _len, _ref;
+  alert("The current settings are now your default.")
+  holder = {};
+  _ref = ['species', 'group', 'type', 'dataset'];
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    item = _ref[_i];
+    holder[item] = $("#" + item).val();
+  }
+  jholder = JSON.stringify(holder);
+  return $.cookie('search_defaults', jholder, {
+    expires: 365
+  });
+};
+
+apply_default = function() {
+  var defaults, item, populate_function, _i, _len, _ref, _results;
+  defaults = $.cookie('search_defaults');
+  if (defaults) {
+    defaults = $.parseJSON(defaults);
+  } else {
+    defaults = {
+      species: "mouse",
+      group: "BXD",
+      type: "Hippocampus mRNA",
+      dataset: "HC_M2_0606_P"
+    };
+  }
+
+  _ref = [['species', 'group'], ['group', 'type'], ['type', 'dataset'], ['dataset', null]];
+  _results = [];
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    item = _ref[_i];
+    $("#" + item[0]).val(defaults[item[0]]);
+    if (item[1]) {
+      populate_function = "populate_" + item[1];
+      _results.push(window[populate_function]());
+    } else {
+      _results.push(void 0);
+    }
+  }
+  return _results;
+};
+
+check_search_term = function() {
+  var or_search_term, and_search_term;
+  or_search_term = $('#or_search').val();
+  and_search_term = $('#and_search').val();
+  if (or_search_term === "" && and_search_term === "") {
+    alert("Please enter one or more search terms or search equations.");
+    return false;
+  }
+};
+
+$("#make_default").click(make_default);
diff --git a/gn2/wqflask/static/new/javascript/draw_corr_scatterplot.js b/gn2/wqflask/static/new/javascript/draw_corr_scatterplot.js
new file mode 100644
index 00000000..f883c0d9
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/draw_corr_scatterplot.js
@@ -0,0 +1,913 @@
+var chart;
+var srchart;
+
+x_val_range = js_data.x_range[1] - js_data.x_range[0]
+y_val_range = js_data.y_range[1] - js_data.y_range[0]
+
+if (x_val_range >= 2 && x_val_range < 9){
+  x_tick_digits = '.1f'
+} else if (x_val_range >= 0.8 && x_val_range < 2) {
+  x_tick_digits = '.2f'
+} else if (x_val_range < 0.8) {
+  x_tick_digits = '.3f'
+} else {
+  x_tick_digits = 'f'
+}
+
+if (y_val_range >= 2 && y_val_range < 8){
+  y_tick_digits = '.1f'
+} else if (y_val_range >= 0.8 && y_val_range < 2) {
+  y_tick_digits = '.2f'
+} else if (y_val_range < 0.8) {
+  y_tick_digits = '.3f'
+} else {
+  y_tick_digits = 'f'
+}
+
+console.log("y_digits:", y_tick_digits)
+
+var layout = {
+    height: 700,
+    width: 800,
+    margin: {
+        l: 70,
+        r: 30,
+        t: 90,
+        b: 50
+    },
+    xaxis: {
+        range: [js_data.x_range[0], js_data.x_range[1]],
+        title: js_data.trait_1,
+        zeroline: false,
+        visible: true,
+        linecolor: 'black',
+        linewidth: 1,
+        ticklen: 4,
+        tickformat: x_tick_digits
+    },
+    yaxis: {
+        range: [js_data.y_range[0], js_data.y_range[1]],
+        title: js_data.trait_2,
+        zeroline: false,
+        visible: true,
+        linecolor: 'black',
+        linewidth: 1,
+        ticklen: 4,
+        tickformat: y_tick_digits,
+        automargin: true
+    },
+    hovermode: "closest",
+    showlegend: false,
+    annotations:[{
+      xref: 'paper',
+      yref: 'paper',
+      x: 1,
+      xanchor: 'right',
+      y: 1.05,
+      yanchor: 'top',
+      text: '<i>r</i> = ' + js_data.r_value.toFixed(3) + ', <i>p</i> = ' + js_data.p_value.toExponential(3) + ', <i>n</i> = ' + js_data.num_overlap,
+      showarrow: false,
+      font: {
+        size: 14
+      },
+    }
+  ]
+}
+
+var sr_layout = {
+  height: 700,
+  width: 800,
+  margin: {
+      l: 60,
+      r: 30,
+      t: 80,
+      b: 50
+  },
+  xaxis: {
+      range: [js_data.sr_range[0], js_data.sr_range[1]],
+      title: js_data.trait_1,
+      zeroline: false,
+      visible: true,
+      linecolor: 'black',
+      linewidth: 1,
+  },
+  yaxis: {
+      range: [js_data.sr_range[0], js_data.sr_range[1]],
+      title: js_data.trait_2,
+      zeroline: false,
+      visible: true,
+      linecolor: 'black',
+      linewidth: 1,
+  },
+  hovermode: "closest",
+  showlegend: false,
+  annotations:[{
+    xref: 'paper',
+    yref: 'paper',
+    x: 1,
+    xanchor: 'right',
+    y: 1.05,
+    yanchor: 'top',
+    text: '<i>rho</i> = ' + js_data.srr_value.toFixed(3) + ', <i>P</i> = ' + js_data.srp_value.toExponential(3) + ', <i>n</i> = ' + js_data.num_overlap,
+    showarrow: false,
+    font: {
+      size: 14
+    },
+  }
+]
+}
+
+var modebar_options = {
+  modeBarButtonsToAdd:[{
+    name: 'Export as SVG',
+    icon: Plotly.Icons.camera,
+    click: function(gd) {
+      Plotly.downloadImage(gd, {format: 'svg'})
+    }
+  },
+  {
+    name: 'Export as JPEG',
+    icon: Plotly.Icons.disk,
+    click: function(gd) {
+      Plotly.downloadImage(gd, {format: 'jpeg'})
+    }
+  }],
+  showEditInChartStudio: true,
+  plotlyServerURL: "https://chart-studio.plotly.com",
+  modeBarButtonsToRemove:['toImage', 'sendDataToCloud', 'hoverClosest', 'hoverCompare', 'hoverClosestCartesian', 'hoverCompareCartesian', 'lasso2d', 'toggleSpikelines'],
+  displaylogo: false
+}
+
+cofactor1_dict = {}
+ranked_cofactor1_dict = {}
+//cofactor1_values = []
+//ranked_cofactor1_values = []
+cofactor2_dict = {}
+ranked_cofactor2_dict = {}
+//cofactor2_values = []
+//ranked_cofactor2_values = []
+cofactor3_dict = {}
+ranked_cofactor3_dict = {}
+
+function drawg() {
+    x_values = []
+    y_values = []
+    sample_names = []
+    for (j = 0; j < js_data.data[0].length; j++) {
+      x_values.push(js_data.data[0][j])
+      y_values.push(js_data.data[1][j])
+      sample_names.push(js_data.indIDs[j])
+    }
+
+    var trace1 = {
+        x: x_values,
+        y: y_values,
+        mode: 'markers',
+        text: sample_names,
+        hoverinfo: "text+x+y"
+    }
+
+    var trace2 = {
+      x: [js_data.intercept_coords[0][0], js_data.intercept_coords[1][0]],
+      y: [js_data.intercept_coords[0][1], js_data.intercept_coords[1][1]],
+      mode: 'lines',
+      line: {
+        color: 'rgb(250, 60, 73)'
+      }
+    }
+
+    Plotly.newPlot('scatterplot2', [trace2, trace1], layout, modebar_options)
+
+}
+
+function srdrawg() {
+    x_values = []
+    y_values = []
+    sample_names = []
+    for (j = 0; j < js_data.rdata[0].length; j++) {
+      x_values.push(js_data.rdata[0][j])
+      y_values.push(js_data.rdata[1][j])
+      sample_names.push(js_data.indIDs[j])
+    }
+
+    var trace1 = {
+        x: x_values,
+        y: y_values,
+        mode: 'markers',
+        text: sample_names,
+        hoverinfo: "text+x+y"
+    }
+
+    Plotly.newPlot('srscatterplot2', [trace1], sr_layout, modebar_options)
+}
+
+function getdata() {
+    var data = [];
+    data.push({
+            values: [],
+            slope: js_data.slope,
+            intercept: js_data.intercept
+        });
+
+    sizemin = 8;
+    sizemax = 30;
+
+    samples1 = [];
+    samples2 = [];
+    samples3 = [];
+
+    if ($('input[name=cofactor1_vals]').val()){
+        vals1 = []
+        val_sample_dict = {}
+        val_sample_pairs = $('input[name=cofactor1_vals]').val().split(",")
+        for (i=0; i < val_sample_pairs.length; i++) {
+          samples1.push(val_sample_pairs[i].split(":")[0])
+          vals1.push(parseFloat(val_sample_pairs[i].split(":")[1]))
+          val_sample_dict[val_sample_pairs[i].split(":")[0]] = parseFloat(val_sample_pairs[i].split(":")[1])
+        }
+        datamin1 = d3.min(vals1);
+        datamax1 = d3.max(vals1);
+
+        cofactor1_dict = val_sample_dict
+        cofactor1_values = vals1
+    }
+
+    if ($('input[name=cofactor2_vals]').val()){
+        vals2 = [];
+        val_sample_dict = {}
+        val_sample_pairs = $('input[name=cofactor2_vals]').val().split(",")
+        for (i=0; i < val_sample_pairs.length; i++) {
+          samples2.push(val_sample_pairs[i].split(":")[0])
+          vals2.push(parseFloat(val_sample_pairs[i].split(":")[1]))
+          val_sample_dict[val_sample_pairs[i].split(":")[0]] = val_sample_pairs[i].split(":")[1]
+        }
+        datamin2 = d3.min(vals2);
+        datamax2 = d3.max(vals2);
+
+        cofactor2_dict = val_sample_dict
+        cofactor2_values = vals2
+    }
+
+    if ($('input[name=cofactor3_vals]').val()){
+        vals3 = [];
+        val_sample_dict = {}
+        val_sample_pairs = $('input[name=cofactor3_vals]').val().split(",")
+        for (i=0; i < val_sample_pairs.length; i++) {
+          samples3.push(val_sample_pairs[i].split(":")[0])
+          vals3.push(parseFloat(val_sample_pairs[i].split(":")[1]))
+          val_sample_dict[val_sample_pairs[i].split(":")[0]] = val_sample_pairs[i].split(":")[1]
+        }
+
+        datamin3 = d3.min(vals3);
+        datamax3 = d3.max(vals3);
+
+        cofactor3_dict = val_sample_dict
+        cofactor3_values = vals3
+    }
+
+    x_values = []
+    y_values = []
+    sample_names = []
+    sizes = []
+
+    size_cofactor_vals = []
+    if ($('#cofactor1_type option:selected').val() == "size" && $('input[name=cofactor1_vals]').val()){
+      size_cofactor_vals = cofactor1_values
+      cofactor_samples = samples1
+      datamin = datamin1
+      datamax = datamax1
+    } else if ($('#cofactor2_type option:selected').val() == "size" && $('input[name=cofactor2_vals]').val()) {
+      size_cofactor_vals = cofactor2_values
+      cofactor_samples = samples2
+      datamin = datamin2
+      datamax = datamax2
+    } else if ($('#cofactor3_type option:selected').val() == "size" && $('input[name=cofactor3_vals]').val()) {
+      size_cofactor_vals = cofactor3_values
+      cofactor_samples = samples3
+      datamin = datamin3
+      datamax = datamax3
+    }
+
+    unique_vals = []
+    symbol_cofactor_vals = []
+    if ($('#cofactor1_type option:selected').val() == "symbol" && $('input[name=cofactor1_vals]').val()){
+      symbol_cofactor_vals = cofactor1_values
+      cofactor_samples = samples1
+    } else if ($('#cofactor2_type option:selected').val() == "symbol" && $('input[name=cofactor2_vals]').val()) {
+      symbol_cofactor_vals = cofactor2_values
+      cofactor_samples = samples2
+    } else if ($('#cofactor3_type option:selected').val() == "symbol" && $('input[name=cofactor3_vals]').val()) {
+      symbol_cofactor_vals = cofactor3_values
+      cofactor_samples = samples3
+    }
+
+    symbol_list = []
+    if (symbol_cofactor_vals.length > 0) {
+      unique_vals = [...new Set(symbol_cofactor_vals)]
+      for (i=0; i<symbol_cofactor_vals.length; i++){
+        val_pos = unique_vals.indexOf(symbol_cofactor_vals[i])
+        if (val_pos != "-1") {
+          symbol_list.push(val_pos)
+        } else {
+          symbol_list.push(0)
+        }
+      }
+    }
+
+    //This is needed to calculate samples shared by cofactors
+    cofactor_samples_array = []
+    if (samples1.length > 0){
+      cofactor_samples_array.push(samples1)
+    }
+    if (samples2.length > 0){
+      cofactor_samples_array.push(samples2)
+    }
+    if (samples3.length > 0){
+      cofactor_samples_array.push(samples3)
+    }
+    if (cofactor_samples_array.length > 0){
+      shared_samples = _.intersection.apply(_, cofactor_samples_array)
+    } else {
+      shared_samples = js_data.indIDs
+    }
+
+    for (j = 0; j < js_data.data[0].length; j++) {
+
+        if (shared_samples.indexOf(js_data.indIDs[j]) == -1) {
+          continue
+        }
+
+        sizev = 10;
+        datav = 0;
+        if (size_cofactor_vals.length > 0){
+          if (cofactor_samples.indexOf(js_data.indIDs[j])) {
+            datav = size_cofactor_vals[j]
+            sizev = map1to2(datamin, datamax, sizemin, sizemax, datav);
+          }
+        }
+
+        x_values.push(js_data.data[0][j])
+        y_values.push(js_data.data[1][j])
+        sample_names.push(js_data.indIDs[j])
+        sizes.push(sizev)
+
+        data[0].values.push({
+            type: "normal",
+            x: js_data.data[0][j],
+            y: js_data.data[1][j],
+            name: js_data.indIDs[j],
+            size: sizev,
+            v3: datav
+        });
+    }
+
+    point_text = []
+    for (j = 0; j < sample_names.length; j++) {
+      this_text = ""
+      this_text += sample_names[j]
+      if (sample_names[j] in cofactor1_dict){
+        this_text += "<br>Cofactor 1: " + cofactor1_dict[sample_names[j]]
+      }
+      if (sample_names[j] in cofactor2_dict){
+        this_text += "<br>Cofactor 2: " + cofactor2_dict[sample_names[j]]
+      }
+      if (sample_names[j] in cofactor3_dict){
+        this_text += "<br>Cofactor 3: " + cofactor3_dict[sample_names[j]]
+      }
+      point_text.push(this_text)
+    }
+
+    if (symbol_list.length > 0) {
+      var trace1 = {
+        x: x_values,
+        y: y_values,
+        mode: 'markers',
+        text: point_text,
+        hoverinfo: "text+x+y",
+        marker: {
+          color: 'rgb(66, 66, 245)',
+          symbol: symbol_list,
+          size: sizes
+        }
+      }
+    } else {
+      var trace1 = {
+        x: x_values,
+        y: y_values,
+        mode: 'markers',
+        text: point_text,
+        hoverinfo: "text+x+y",
+        marker: {
+          color: 'rgb(66, 66, 245)',
+          size: sizes
+        }
+      }
+    }
+
+    var trace2 = {
+      x: [js_data.intercept_coords[0][0], js_data.intercept_coords[1][0]],
+      y: [js_data.intercept_coords[0][1], js_data.intercept_coords[1][1]],
+      mode: 'lines',
+      line: {
+        color: 'rgb(250, 60, 73)'
+      }
+    }
+
+    return [trace2, trace1];
+}
+
+function map1to2 (min1, max1, min2, max2, v1) {
+    v2 = (v1 - min1) * (max2 - min2) / (max1 - min1) + min2;
+    return v2;
+}
+
+function srgetdata() {
+    var data = [];
+    data.push({
+            values: [],
+            slope: js_data.srslope,
+            intercept: js_data.srintercept
+        });
+
+    sizemin = 8;
+    sizemax = 30;
+
+    ranked_cofactor_vals = ""
+
+    samples1 = [];
+    samples2 = [];
+    samples3 = [];
+
+    if ($('input[name=ranked_cofactor1_vals]').val()){
+        vals1 = []
+        val_sample_dict = {}
+        val_sample_pairs = $('input[name=ranked_cofactor1_vals]').val().split(",")
+        for (i=0; i < val_sample_pairs.length; i++) {
+          samples1.push(val_sample_pairs[i].split(":")[0])
+          vals1.push(parseFloat(val_sample_pairs[i].split(":")[1]))
+          val_sample_dict[val_sample_pairs[i].split(":")[0]] = parseFloat(val_sample_pairs[i].split(":")[1])
+        }
+        datamin1 = d3.min(vals1);
+        datamax1 = d3.max(vals1);
+
+        ranked_cofactor1_dict = val_sample_dict
+        ranked_cofactor1_values = vals1
+    }
+
+    if ($('input[name=ranked_cofactor2_vals]').val()){
+        vals2 = [];
+        val_sample_dict = {}
+        val_sample_pairs = $('input[name=ranked_cofactor2_vals]').val().split(",")
+        for (i=0; i < val_sample_pairs.length; i++) {
+          samples2.push(val_sample_pairs[i].split(":")[0])
+          vals2.push(parseFloat(val_sample_pairs[i].split(":")[1]))
+          val_sample_dict[val_sample_pairs[i].split(":")[0]] = val_sample_pairs[i].split(":")[1]
+        }
+        datamin2 = d3.min(vals2);
+        datamax2 = d3.max(vals2);
+
+        ranked_cofactor2_dict = val_sample_dict
+        ranked_cofactor2_values = vals2
+    }
+
+    if ($('input[name=ranked_cofactor3_vals]').val()){
+        vals3 = [];
+        val_sample_dict = {}
+        val_sample_pairs = $('input[name=ranked_cofactor3_vals]').val().split(",")
+        for (i=0; i < val_sample_pairs.length; i++) {
+          samples3.push(val_sample_pairs[i].split(":")[0])
+          vals3.push(parseFloat(val_sample_pairs[i].split(":")[1]))
+          val_sample_dict[val_sample_pairs[i].split(":")[0]] = val_sample_pairs[i].split(":")[1]
+        }
+
+        datamin3 = d3.min(vals3);
+        datamax3 = d3.max(vals3);
+
+        ranked_cofactor3_dict = val_sample_dict
+        ranked_cofactor3_values = vals3
+    }
+
+    x_values = []
+    y_values = []
+    sample_names = []
+    sizes = []
+
+    if ($('#cofactor1_type option:selected').val() == "size" && $('input[name=ranked_cofactor1_vals]').val()){
+      size_cofactor_vals = ranked_cofactor1_values
+      cofactor_samples = samples1
+      datamin = datamin1
+      datamax = datamax1
+    } else if ($('#cofactor2_type option:selected').val() == "size" && $('input[name=ranked_cofactor2_vals]').val()) {
+      size_cofactor_vals = ranked_cofactor2_values
+      cofactor_samples = samples2
+      datamin = datamin2
+      datamax = datamax2
+    } else if ($('#cofactor3_type option:selected').val() == "size" && $('input[name=ranked_cofactor3_vals]').val()) {
+      size_cofactor_vals = ranked_cofactor3_values
+      cofactor_samples = samples3
+      datamin = datamin3
+      datamax = datamax3
+    }
+
+    unique_vals = []
+    symbol_cofactor_vals = []
+    if ($('#cofactor1_type option:selected').val() == "symbol" && $('input[name=ranked_cofactor1_vals]').val()){
+      symbol_cofactor_vals = cofactor1_values
+      cofactor_samples = samples1
+    } else if ($('#cofactor2_type option:selected').val() == "symbol" && $('input[name=ranked_cofactor2_vals]').val()) {
+      symbol_cofactor_vals = cofactor2_values
+      cofactor_samples = samples2
+    } else if ($('#cofactor3_type option:selected').val() == "symbol" && $('input[name=ranked_cofactor3_vals]').val()) {
+      symbol_cofactor_vals = cofactor3_values
+      cofactor_samples = samples3
+    }
+
+    symbol_list = []
+    if (symbol_cofactor_vals.length > 0) {
+      unique_vals = [...new Set(symbol_cofactor_vals)]
+      for (i=0; i<symbol_cofactor_vals.length; i++){
+        val_pos = unique_vals.indexOf(symbol_cofactor_vals[i])
+        if (val_pos != "-1") {
+          symbol_list.push(val_pos)
+        } else {
+          symbol_list.push(0)
+        }
+      }
+    }
+
+    //This is needed to calculate samples shared by cofactors
+    cofactor_samples_array = []
+    if (samples1.length > 0){
+      cofactor_samples_array.push(samples1)
+    }
+    if (samples2.length > 0){
+      cofactor_samples_array.push(samples2)
+    }
+    if (samples3.length > 0){
+      cofactor_samples_array.push(samples3)
+    }
+    if (cofactor_samples_array.length > 0){
+      shared_samples = _.intersection.apply(_, cofactor_samples_array)
+    } else {
+      shared_samples = js_data.indIDs
+    }
+
+    for (j = 0; j < js_data.rdata[0].length; j++) {
+
+        if (shared_samples.indexOf(js_data.indIDs[j]) == -1) {
+          continue
+        }
+
+        if (size_cofactor_vals.length > 0){
+          if (cofactor_samples.indexOf(js_data.indIDs[j])) {
+            datav = size_cofactor_vals[j]
+            sizev = map1to2(datamin, datamax, sizemin, sizemax, datav);
+          }
+        } else {
+            sizev = 10;
+        }
+
+        x_values.push(js_data.rdata[0][j])
+        y_values.push(js_data.rdata[1][j])
+        sample_names.push(js_data.indIDs[j])
+        sizes.push(sizev)
+
+        data[0].values.push({
+            type: "ranked",
+            x: js_data.rdata[0][j],
+            y: js_data.rdata[1][j],
+            name: js_data.indIDs[j],
+            size: sizev,
+        });
+    }
+
+    point_text = []
+    for (j = 0; j < sample_names.length; j++) {
+      this_text = ""
+      this_text += sample_names[j]
+      if (sample_names[j] in ranked_cofactor1_dict){
+        this_text += "<br>Cofactor 1: " + ranked_cofactor1_dict[sample_names[j]]
+      }
+      if (sample_names[j] in ranked_cofactor2_dict){
+        this_text += "<br>Cofactor 2: " + ranked_cofactor2_dict[sample_names[j]]
+      }
+      if (sample_names[j] in cofactor3_dict){
+        this_text += "<br>Cofactor 3: " + ranked_cofactor3_dict[sample_names[j]]
+      }
+      point_text.push(this_text)
+    }
+
+    var trace1 = {
+        x: x_values,
+        y: y_values,
+        mode: 'markers',
+        text: point_text,
+        hoverinfo: "text+x+y",
+        marker: {
+          color: 'rgb(66, 66, 245)',
+          symbol: symbol_list,
+          size: sizes
+        }
+    }
+
+    var trace2 = {
+      x: [js_data.sr_intercept_coords[0][0], js_data.sr_intercept_coords[1][0]],
+      y: [js_data.sr_intercept_coords[0][1], js_data.sr_intercept_coords[1][1]],
+      mode: 'lines',
+      line: {
+        color: 'rgb(250, 60, 73)'
+      }
+    }
+
+    return [trace2, trace1];
+}
+
+function chartupdatewh() {
+    var width = $("#width").val();
+    var height = $("#height").val();
+
+    width_height_update = {
+      height: height,
+      width: width
+    }
+
+    Plotly.newPlot('scatterplot2', getdata(), layout, modebar_options)
+    Plotly.relayout('scatterplot2', width_height_update)
+
+    Plotly.newPlot('srscatterplot2', srgetdata(), sr_layout, modebar_options)
+    Plotly.relayout('srscatterplot2', width_height_update)
+}
+
+function colorer(d) {
+    if ($('#cofactor1_type option:selected').val() == "color"){
+        datamin = d3.min(cofactor1_values);
+        datamax = d3.max(cofactor1_values);
+    } else if ($('#cofactor2_type option:selected').val() == "color"){
+        datamin = d3.min(cofactor2_values);
+        datamax = d3.max(cofactor2_values);
+    } else {
+        datamin = d3.min(cofactor3_values);
+        datamax = d3.max(cofactor3_values);
+    }
+    colormin = $("#cocolorfrom").val();
+    colormax = $("#cocolorto").val();
+
+    compute = d3.interpolate("#"+colormin, "#"+colormax);
+    linear = d3.scale.linear().domain([datamin, datamax]).range([0,1]);
+
+    this_sample = d.tx.split("<br>")[0]
+
+    if ($('#cofactor1_type option:selected').val() == "color"){
+      c= compute(linear(cofactor1_dict[this_sample]));
+    } else if ($('#cofactor2_type option:selected').val() == "color"){
+      c= compute(linear(cofactor2_dict[this_sample]));
+    } else {
+      c= compute(linear(cofactor3_dict[this_sample]));
+    }
+
+    return c;
+}
+
+function ranked_colorer(d) {
+    if ($('#cofactor1_type option:selected').val() == "color"){
+        datamin = d3.min(ranked_cofactor1_values);
+        datamax = d3.max(ranked_cofactor1_values);
+    } else if ($('#cofactor2_type option:selected').val() == "color"){
+        datamin = d3.min(ranked_cofactor2_values);
+        datamax = d3.max(ranked_cofactor2_values);
+    } else {
+        datamin = d3.min(ranked_cofactor3_values);
+        datamax = d3.max(ranked_cofactor3_values);
+    }
+    colormin = $("#cocolorfrom").val();
+    colormax = $("#cocolorto").val();
+
+    compute = d3.interpolate("#"+colormin, "#"+colormax);
+    linear = d3.scale.linear().domain([datamin, datamax]).range([0,1]);
+
+    this_sample = d.tx.split("<br>")[0]
+
+    if ($('#cofactor1_type option:selected').val() == "color"){
+      c= compute(linear(ranked_cofactor1_dict[this_sample]));
+    } else if ($('#cofactor2_type option:selected').val() == "color"){
+      c= compute(linear(ranked_cofactor2_dict[this_sample]));
+    } else {
+      c= compute(linear(ranked_cofactor3_dict[this_sample]));
+    }
+
+    return c;
+}
+
+function chartupdatedata() {
+    var size = $("#marksize").val();
+    var shape = $("#markshape").val();
+
+    var pearson_title_update = {
+      title: "Pearson Correlation Scatterplot"
+    }
+    var spearman_title_update = {
+      title: "Spearman Rank Correlation Scatterplot"
+    }
+
+    Plotly.newPlot('scatterplot2', getdata(), layout, modebar_options)
+    Plotly.relayout('scatterplot2', pearson_title_update)
+    Plotly.newPlot('srscatterplot2', srgetdata(), sr_layout, modebar_options)
+    Plotly.relayout('srscatterplot2', spearman_title_update)
+
+    if ($('#cofactor1_type option:selected').val() == "color"){
+      $('#cofactor_color_selector').css("display", "inline")
+      if ($('input[name=cofactor1_vals]').val()){
+        d3.select('#scatterplot2 svg').selectAll('.point')
+          .style({
+              'stroke': colorer,
+              'fill':   colorer
+        });
+        d3.select('#srscatterplot2 svg').selectAll('.point')
+          .style({
+              'stroke': ranked_colorer,
+              'fill':   ranked_colorer
+        });
+      }
+    } else if ($('#cofactor2_type option:selected').val() == "color"){
+      $('#cofactor_color_selector').css("display", "inline")
+      if ($('input[name=cofactor2_vals]').val()){
+        d3.select('#scatterplot2 svg').selectAll('.point')
+          .style({
+              'stroke': colorer,
+              'fill':   colorer
+        });
+        d3.select('#srscatterplot2 svg').selectAll('.point')
+          .style({
+              'stroke': ranked_colorer,
+              'fill':   ranked_colorer
+        });
+      }
+    } else {
+      $('#cofactor_color_selector').css("display", "inline")
+      if ($('input[name=cofactor3_vals]').val()){
+        d3.select('#scatterplot2 svg').selectAll('.point')
+          .style({
+              'stroke': colorer,
+              'fill':   colorer
+        });
+        d3.select('#srscatterplot2 svg').selectAll('.point')
+          .style({
+              'stroke': ranked_colorer,
+              'fill':   ranked_colorer
+        });
+      }
+    }
+}
+
+drawg();
+srdrawg();
+
+$(".chartupdatewh").change(function () {
+    chartupdatewh();
+});
+
+$(".chartupdatedata").change(function () {
+    chartupdatedata();
+});
+
+$("#cofactor1_type").change(function () {
+
+    the_types = ["color", "size", "symbol"]
+
+    cofactor1_type = $(this).val()
+    cofactor2_type = $("#cofactor2_type option:selected").val()
+    cofactor3_type = $("#cofactor3_type option:selected").val()
+
+    if (cofactor2_type == cofactor1_type){
+      for (i=0; i<3; i++){
+        if (the_types[i] != cofactor1_type && the_types[i] != cofactor3_type) {
+          $("#cofactor2_type").val(the_types[i]);
+        }
+      }
+    }
+    else if (cofactor3_type == cofactor1_type){
+      for (i=0; i<3; i++){
+        if (the_types[i] != cofactor1_type && the_types[i] != cofactor2_type) {
+          $("#cofactor3_type").val(the_types[i]);
+        }
+      }
+    }
+
+    chartupdatedata();
+});
+
+$("#cofactor2_type").change(function () {
+
+    the_types = ["color", "size", "symbol"]
+
+    cofactor2_type = $(this).val()
+    cofactor1_type = $("#cofactor1_type option:selected").val()
+    cofactor3_type = $("#cofactor3_type option:selected").val()
+
+    if (cofactor1_type == cofactor2_type){
+      for (i=0; i<3; i++){
+        if (the_types[i] != cofactor2_type && the_types[i] != cofactor3_type){
+          $("#cofactor1_type").val(the_types[i]);
+        }
+      }
+    }
+    else if (cofactor3_type == cofactor2_type){
+      for (i=0; i<3; i++){
+        if (the_types[i] != cofactor2_type && the_types[i] != cofactor1_type){
+          $("#cofactor3_type").val(the_types[i]);
+        }
+      }
+    }
+
+    chartupdatedata();
+});
+
+$("#cofactor3_type").change(function () {
+
+    the_types = ["color", "size", "symbol"]
+
+    cofactor3_type = $(this).val()
+    cofactor1_type = $("#cofactor1_type option:selected").val()
+    cofactor2_type = $("#cofactor2_type option:selected").val()
+
+    if (cofactor1_type == cofactor3_type){
+      for (i=0; i<3; i++){
+        if (the_types[i] != cofactor2_type && the_types[i] != cofactor3_type){
+          $("#cofactor1_type").val(the_types[i]);
+        }
+      }
+    }
+    else if (cofactor2_type == cofactor3_type){
+      for (i=0; i<3; i++){
+        if (the_types[i] != cofactor2_type && the_types[i] != cofactor1_type){
+          $("#cofactor3_type").val(the_types[i]);
+        }
+      }
+    }
+});
+
+open_covariate_selection = function() {
+  return $('#collections_holder').load('/collections/list #collections_list', (function(_this) {
+    return function() {
+      $.colorbox({
+        inline: true,
+        href: "#collections_holder",
+        onComplete: function(){
+            $.getScript("/static/new/javascript/get_traits_from_collection.js");
+        }
+      });
+      return $('a.collection_name').attr('onClick', 'return false');
+    };
+  })(this));
+};
+
+remove_cofactors = function() {
+  $('input[name=cofactor1_vals]').val("");
+  $('input[name=ranked_cofactor1_vals]').val("");
+  $('input[name=cofactor2_vals]').val("");
+  $('input[name=ranked_cofactor2_vals]').val("");
+  $('input[name=cofactor3_vals]').val("");
+  $('input[name=ranked_cofactor3_vals]').val("");
+
+  $('#select_cofactor1').text("Select Cofactor 1");
+  $('#cofactor2_button').css("display", "none");
+  $('#cofactor3_button').css("display", "none");
+
+  $('#cofactor_color_select').css("display", "none");
+
+  $('#cofactor1_info_container').css("display", "none");
+  $('#cofactor2_info_container').css("display", "none");
+  $('#cofactor3_info_container').css("display", "none");
+
+  chartupdatedata();
+};
+
+$(document).ready(function(){
+    chartupdatedata();
+
+    $('#select_cofactor1').click(function () {
+        $('input[name=selecting_which_cofactor]').val("1");
+        open_covariate_selection();
+    });
+
+    $('#select_cofactor2').click(function () {
+        $('input[name=selecting_which_cofactor]').val("2");
+        open_covariate_selection();
+    });
+
+    $('#select_cofactor3').click(function () {
+        $('input[name=selecting_which_cofactor]').val("3");
+        open_covariate_selection();
+    });
+
+    $('#remove_cofactors').click(function () {
+        remove_cofactors();
+    });
+
+    $('#invert_axes').click(function () {
+        var [dataset_1, trait_1] = js_data.trait_2.split(": ")
+        var [dataset_2, trait_2] = js_data.trait_1.split(": ")
+        window.location.replace("/corr_scatter_plot?method=pearson&dataset_1=" + dataset_1 + "&dataset_2=" + dataset_2 + "&trait_1=" + trait_1 + "&trait_2=" + trait_2)
+    });
+
+});
diff --git a/gn2/wqflask/static/new/javascript/draw_probability_plot.js b/gn2/wqflask/static/new/javascript/draw_probability_plot.js
new file mode 100644
index 00000000..1b944d4f
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/draw_probability_plot.js
@@ -0,0 +1,136 @@
+// Generated by CoffeeScript 1.9.2
+(function() {
+  var get_z_scores, redraw_prob_plot, root;
+
+  root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+  get_z_scores = function(n) {
+    var i, j, osm_uniform, ref, x;
+    osm_uniform = new Array(n);
+    osm_uniform[n - 1] = Math.pow(0.5, 1.0 / n);
+    osm_uniform[0] = 1 - osm_uniform[n - 1];
+    for (i = j = 1, ref = n - 2; 1 <= ref ? j <= ref : j >= ref; i = 1 <= ref ? ++j : --j) {
+      osm_uniform[i] = (i + 1 - 0.3175) / (n + 0.365);
+    }
+    return (function() {
+      var k, len, results;
+      results = [];
+      for (k = 0, len = osm_uniform.length; k < len; k++) {
+        x = osm_uniform[k];
+        results.push(jStat.normal.inv(x, 0, 1));
+      }
+      return results;
+    })();
+  };
+
+  redraw_prob_plot = function(samples, sample_group) {
+    var container, h, margin, totalh, totalw, w;
+    h = 600;
+    w = 500;
+    margin = {
+      left: 60,
+      top: 40,
+      right: 40,
+      bottom: 40,
+      inner: 5
+    };
+    totalh = h + margin.top + margin.bottom;
+    totalw = w + margin.left + margin.right;
+    container = $("#prob_plot_container");
+    container.width(totalw);
+    container.height(totalh);
+    return nv.addGraph((function(_this) {
+      return function() {
+        var W, all_samples, chart, data, intercept, make_data, names, pvalue, pvalue_str, slope, sorted_names, sorted_values, sw_result, test_str, x, z_scores;
+        chart = nv.models.scatterChart().width(w).height(h).showLegend(true).color(d3.scale.category10().range());
+        chart.pointRange([50, 50]);
+        chart.legend.updateState(false);
+        chart.xAxis.axisLabel("Expected Z score").axisLabelDistance(20).tickFormat(d3.format('.02f'));
+        chart.tooltipContent(function(obj) {
+          return '<b style="font-size: 20px">' + obj.point.name + '</b>';
+        });
+        all_samples = samples[sample_group];
+        names = (function() {
+          var j, len, ref, results;
+          ref = _.keys(all_samples);
+          results = [];
+          for (j = 0, len = ref.length; j < len; j++) {
+            x = ref[j];
+            if (all_samples[x] !== null) {
+              results.push(x);
+            }
+          }
+          return results;
+        })();
+        sorted_names = names.sort(function(x, y) {
+          return all_samples[x].value - all_samples[y].value;
+        });
+        max_decimals = 0
+        sorted_values = (function() {
+          var j, len, results;
+          results = [];
+          for (j = 0, len = sorted_names.length; j < len; j++) {
+            x = sorted_names[j];
+            results.push(all_samples[x].value);
+            if (all_samples[x].value.countDecimals() > max_decimals) {
+                max_decimals = all_samples[x].value.countDecimals()-1
+            }
+          }
+          return results;
+        })();
+        //ZS: 0.1 indicates buffer, increase to increase buffer
+        y_domain = [sorted_values[0] - (sorted_values.slice(-1)[0] - sorted_values[0])*0.1, sorted_values.slice(-1)[0] + (sorted_values.slice(-1)[0] - sorted_values[0])*0.1]
+        chart.yDomain(y_domain)
+        chart.yAxis.axisLabel("Trait value").axisLabelDistance(10).tickFormat(d3.format('.0'+max_decimals.toString()+'f'));
+        sw_result = ShapiroWilkW(sorted_values);
+        W = sw_result.w.toFixed(3);
+        pvalue = sw_result.p.toFixed(3);
+        pvalue_str = pvalue > 0.05 ? pvalue.toString() : "<span style='color:red'>" + pvalue + "</span>";
+        test_str = "Shapiro-Wilk test statistic is " + W + " (p = " + pvalue_str + ")";
+        z_scores = get_z_scores(sorted_values.length);
+        //ZS: 0.1 indicates buffer, increase to increase buffer
+        x_domain = [z_scores[0] - (z_scores.slice(-1)[0] - z_scores[0])*0.1, z_scores.slice(-1)[0] + (z_scores.slice(-1)[0] - z_scores[0])*0.1]
+        chart.xDomain(x_domain)
+        slope = jStat.stdev(sorted_values);
+        intercept = jStat.mean(sorted_values);
+        make_data = function(group_name) {
+          var sample, value, z_score;
+          return {
+            key: js_data.sample_group_types[group_name],
+            slope: slope,
+            intercept: intercept,
+            values: (function() {
+              var j, len, ref, ref1, results;
+              ref = _.zip(get_z_scores(sorted_values.length), sorted_values, sorted_names);
+              results = [];
+              for (j = 0, len = ref.length; j < len; j++) {
+                ref1 = ref[j], z_score = ref1[0], value = ref1[1], sample = ref1[2];
+                if (sample in samples[group_name]) {
+                  results.push({
+                    x: z_score,
+                    y: value,
+                    name: sample
+                  });
+                }
+              }
+              return results;
+            })()
+          };
+        };
+        data = [make_data('samples_primary'), make_data('samples_other')];
+        d3.select("#prob_plot_container svg").datum(data).call(chart);
+        if (js_data.trait_symbol != null) {
+            $("#prob_plot_title").html("<h3>" + js_data.trait_symbol + ": " + js_data.trait_id + "</h3>");
+        } else {
+            $("#prob_plot_title").html("<h3>" + js_data.trait_id + "</h3>");
+        }
+        $("#shapiro_wilk_text").html(test_str)
+        $("#prob_plot_container .nv-legendWrap").toggle(sample_group === "samples_all");
+        return chart;
+      };
+    })(this));
+  };
+
+  root.redraw_prob_plot_impl = redraw_prob_plot;
+
+}).call(this);
diff --git a/gn2/wqflask/static/new/javascript/get_covariates_from_collection.js b/gn2/wqflask/static/new/javascript/get_covariates_from_collection.js
new file mode 100644
index 00000000..ba8fa8b0
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/get_covariates_from_collection.js
@@ -0,0 +1,248 @@
+// Generated by CoffeeScript 1.8.0
+var add_trait_data, assemble_into_json, back_to_collections, collection_click, collection_list, color_by_trait, create_trait_data_csv, get_this_trait_vals, get_trait_data, process_traits, selected_traits, submit_click, this_trait_data, trait_click,
+  __indexOf = [].indexOf || function(item) { for (var i = 0, l = this.length; i < l; i++) { if (i in this && this[i] === item) return i; } return -1; };
+
+this_trait_data = null;
+
+selected_traits = {};
+
+$('#collections_list').attr("style", "width: 100%;");
+$('#trait_table').dataTable( {
+    "drawCallback": function( settings ) {
+         $('#trait_table tr').click(function(event) {
+             if (event.target.type !== 'checkbox') {
+                 $(':checkbox', this).trigger('click');
+             }
+         });
+    },
+    "columns": [
+        { "type": "natural", "width": "3%" },
+        { "type": "natural", "width": "8%" },
+        { "type": "natural", "width": "20%" },
+        { "type": "natural", "width": "25%" },
+        { "type": "natural", "width": "25%" },
+        { "type": "natural", "width": "15%" }
+    ],
+    "columnDefs": [ {
+        "targets": 0,
+        "orderable": false
+    } ],
+    "order": [[1, "asc" ]],
+    "sDom": "RZtr",
+    "iDisplayLength": -1,
+    "autoWidth": true,
+    "bDeferRender": true,
+    "bSortClasses": false,
+    "paging": false,
+    "orderClasses": true
+} );
+
+if ( ! $.fn.DataTable.isDataTable( '#collection_table' ) ) {
+  $('#collection_table').dataTable( {
+      "createdRow": function ( row, data, index ) {
+          if ($('td', row).eq(2).text().length > 40) {
+              $('td', row).eq(2).text($('td', row).eq(2).text().substring(0, 40));
+              $('td', row).eq(2).text($('td', row).eq(2).text() + '...')
+          }
+          if ($('td', row).eq(4).text().length > 50) {
+              $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 50));
+              $('td', row).eq(4).text($('td', row).eq(4).text() + '...')
+          }
+      },
+      "columnDefs": [ {
+          "targets": 0,
+          "orderable": false
+      } ],
+      "order": [[1, "asc" ]],
+      "sDom": "ZRtr",
+      "iDisplayLength": -1,
+      "autoWidth": true,
+      "bSortClasses": false,
+      "paging": false,
+      "orderClasses": true
+  } );
+}
+
+collection_click = function() {
+  var this_collection_url;
+  this_collection_url = $(this).find('.collection_name').prop("href");
+  this_collection_url += "&json";
+  collection_list = $("#collections_holder").html();
+  return $.ajax({
+    dataType: "json",
+    url: this_collection_url,
+    success: process_traits
+  });
+};
+
+submit_click = function() {
+  var covariates_string = "";
+  var covariates_as_set = new Set();
+  $(".selected-covariates:first option").each(function() {
+    if ($(this).val() != ""){
+      covariates_as_set.add($(this).val() + "," + $(this).text());
+    }
+  });
+  $('#collections_holder').find('input[type=checkbox]:checked').each(function() {
+    var this_dataset, this_trait;
+    this_trait = $(this).parents('tr').find('.trait').text();
+    this_trait_display = $(this).parents('tr').find('.trait').data("display_name");
+    this_description = $(this).parents('tr').find('.description').text();
+    this_dataset = $(this).parents('tr').find('.dataset').data("dataset");
+    this_covariate_display_string = this_trait_display
+    if (this_covariate_display_string.length > 50) {
+      this_covariate_display_string = this_covariate_display_string.substring(0, 45) + "..."
+    }
+    covariates_as_set.add(this_trait + ":" + this_dataset + "," + this_covariate_display_string)
+  });
+
+  covariates_as_list = Array.from(covariates_as_set)
+
+  // Removed the starting "No covariates selected" option before adding options for each covariate
+  if (covariates_as_list.length > 0){
+    $(".selected-covariates option[value='']").each(function() {
+      $(this).remove();
+    });
+  }
+
+  $(".selected-covariates option").each(function() {
+    $(this).remove();
+  });
+
+  covariate_list_for_form = []
+  $.each(covariates_as_list, function (index, value) {
+    option_value = value.split(",")[0]
+    option_text = value.split(",")[1]
+    $(".selected-covariates").append($("<option/>", {
+      value: option_value,
+      text: option_text
+    }))
+    covariate_list_for_form.push(option_value)
+  });
+
+  $("input[name=covariates]").val(covariate_list_for_form.join(","));
+
+  cofactor_count = $(".selected-covariates:first option").length;
+  if (cofactor_count > 10){
+    $(".selected-covariates").attr("size", 10);
+  } else {
+    $(".selected-covariates").attr("size", cofactor_count);
+  }
+
+  return $.colorbox.close();
+};
+
+trait_click = function() {
+  var dataset, this_trait_url, trait;
+  trait = $(this).parent().find('.trait').text();
+  dataset = $(this).parent().find('.dataset').data("dataset");
+  $("input[name=covariates]").val(trait + ":" + dataset)
+  $(".selected-covariates").text(trait)
+  return $.colorbox.close();
+};
+
+add_trait_data = function(trait_data, textStatus, jqXHR) {
+  var trait_name, trait_sample_data;
+  trait_name = trait_data[0];
+  trait_sample_data = trait_data[1];
+  selected_traits[trait_name] = trait_sample_data;
+  return console.log("selected_traits:", selected_traits);
+};
+
+get_trait_data = function(trait_data, textStatus, jqXHR) {
+  var sample, samples, this_trait_vals, trait_sample_data, vals, _i, _len;
+  trait_sample_data = trait_data[1];
+  samples = $('input[name=allsamples]').val().split(" ");
+  vals = [];
+  for (_i = 0, _len = samples.length; _i < _len; _i++) {
+    sample = samples[_i];
+    if (__indexOf.call(Object.keys(trait_sample_data), sample) >= 0) {
+      vals.push(parseFloat(trait_sample_data[sample]));
+    } else {
+      vals.push(null);
+    }
+  }
+  if ($('input[name=samples]').length < 1) {
+    $('#hidden_inputs').append('<input type="hidden" name="samples" value="[' + samples.toString() + ']" />');
+  }
+  $('#hidden_inputs').append('<input type="hidden" name="vals" value="[' + vals.toString() + ']" />');
+  this_trait_vals = get_this_trait_vals(samples);
+  return color_by_trait(trait_sample_data);
+};
+
+get_this_trait_vals = function(samples) {
+  var sample, this_trait_vals, this_val, this_vals_json, _i, _len;
+  this_trait_vals = [];
+  for (_i = 0, _len = samples.length; _i < _len; _i++) {
+    sample = samples[_i];
+    this_val = parseFloat($("input[name='value:" + sample + "']").val());
+    if (!isNaN(this_val)) {
+      this_trait_vals.push(this_val);
+    } else {
+      this_trait_vals.push(null);
+    }
+  }
+  this_vals_json = '[' + this_trait_vals.toString() + ']';
+  return this_trait_vals;
+};
+
+assemble_into_json = function(this_trait_vals) {
+  var json_data, json_ids, num_traits, samples;
+  num_traits = $('input[name=vals]').length;
+  samples = $('input[name=samples]').val();
+  json_ids = samples;
+  json_data = '[' + this_trait_vals;
+  $('input[name=vals]').each((function(_this) {
+    return function(index, element) {
+      return json_data += ',' + $(element).val();
+    };
+  })(this));
+  json_data += ']';
+  return [json_ids, json_data];
+};
+
+color_by_trait = function(trait_sample_data, textStatus, jqXHR) {
+  console.log('in color_by_trait:', trait_sample_data);
+  return root.bar_chart.color_by_trait(trait_sample_data);
+};
+
+process_traits = function(trait_data, textStatus, jqXHR) {
+  var the_html, trait, _i, _len;
+  the_html = "<button id='back_to_collections' class='btn btn-inverse btn-small'>";
+  the_html += "<i class='icon-white icon-arrow-left'></i> Back </button>";
+  the_html += "    <button id='submit_cofactors' class='btn btn-primary btn-small submit'> Submit </button>";
+  the_html += "<table id='collection_table' style='padding-top: 10px;' class='table table-hover'>";
+  the_html += "<thead><tr><th></th><th>Record</th><th>Data Set</th><th>Description</th></tr></thead>";
+  the_html += "<tbody>";
+  for (_i = 0, _len = trait_data.length; _i < _len; _i++) {
+    trait = trait_data[_i];
+    the_html += "<tr class='trait_line'>";
+    the_html += "<td class='select_trait'><input type='checkbox' name='selectCheck' class='checkbox edit_sample_checkbox'></td>";
+    if ("abbreviation" in trait) {
+        the_html += "<td class='trait' data-display_name='" + trait.name + " - " + trait.abbreviation + "'>" + trait.name + "</td>";
+    } else if ("symbol" in trait) {
+      the_html += "<td class='trait' data-display_name='" + trait.name + " - " + trait.symbol + "'>" + trait.name + "</td>";
+    } else {
+      the_html += "<td class='trait' data-display_name='" + trait.name + "'>" + trait.name + "</td>";
+    }
+    the_html += "<td class='dataset' data-dataset='" + trait.dataset + "'>" + trait.dataset_name + "</td>";
+    the_html += "<td class='description'>" + trait.description + "</td>";
+  }
+  the_html += "</tbody>";
+  the_html += "</table>";
+  the_html += "<script type='text/javascript' src='/static/new/javascript/get_covariates_from_collection.js'></script>"
+  $("#collections_holder").html(the_html);
+  return $('#collections_holder').colorbox.resize();
+};
+
+back_to_collections = function() {
+  console.log("collection_list:", collection_list);
+  $("#collections_holder").html(collection_list);
+  $(document).on("click", ".collection_line", collection_click);
+  return $('#collections_holder').colorbox.resize();
+};
+
+$(".collection_line").on("click", collection_click);
+$(".submit").on("click", submit_click);
+$(".trait").on("click", trait_click);
+$("#back_to_collections").on("click", back_to_collections);
diff --git a/gn2/wqflask/static/new/javascript/get_traits_from_collection.js b/gn2/wqflask/static/new/javascript/get_traits_from_collection.js
new file mode 100644
index 00000000..c115f3b0
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/get_traits_from_collection.js
@@ -0,0 +1,414 @@
+// Generated by CoffeeScript 1.8.0
+var add_trait_data, assemble_into_json, back_to_collections, collection_click, collection_list, color_by_trait, create_trait_data_csv, get_this_trait_vals, get_trait_data, process_traits, selected_traits, submit_click, this_trait_data, trait_click,
+  __indexOf = [].indexOf || function(item) { for (var i = 0, l = this.length; i < l; i++) { if (i in this && this[i] === item) return i; } return -1; };
+
+this_trait_data = null;
+
+selected_traits = {};
+
+$('#collections_list').attr("style", "width: 100%;");
+$('#trait_table').dataTable( {
+    "drawCallback": function( settings ) {
+         $('#trait_table tr').click(function(event) {
+             if (event.target.type !== 'checkbox') {
+                 $(':checkbox', this).trigger('click');
+             }
+         });
+    },
+    "columns": [
+        { "type": "natural", "width": "3%" },
+        { "type": "natural", "width": "8%" },
+        { "type": "natural", "width": "20%" },
+        { "type": "natural", "width": "25%" },
+        { "type": "natural", "width": "25%" },
+        { "type": "natural", "width": "15%" }
+    ],
+    "columnDefs": [ {
+        "targets": 0,
+        "orderable": false
+    } ],
+    "order": [[1, "asc" ]],
+    "sDom": "RZtr",
+    "iDisplayLength": -1,
+    "autoWidth": true,
+    "bDeferRender": true,
+    "bSortClasses": false,
+    "paging": false,
+    "orderClasses": true
+} );
+
+if ( ! $.fn.DataTable.isDataTable( '#collection_table' ) ) {
+  $('#collection_table').dataTable( {
+    "createdRow": function ( row, data, index ) {
+        if ($('td', row).eq(2).text().length > 40) {
+            $('td', row).eq(2).text($('td', row).eq(2).text().substring(0, 40));
+            $('td', row).eq(2).text($('td', row).eq(2).text() + '...')
+        }
+        if ($('td', row).eq(4).text().length > 50) {
+            $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 50));
+            $('td', row).eq(4).text($('td', row).eq(4).text() + '...')
+        }
+    },
+    "columnDefs": [ {
+        "targets": 0,
+        "orderable": false
+    } ],
+    "order": [[1, "asc" ]],
+    "sDom": "ZRtr",
+    "iDisplayLength": -1,
+    "autoWidth": true,
+    "bSortClasses": false,
+    "paging": false,
+    "orderClasses": true
+  } );
+}
+
+collection_click = function() {
+  var this_collection_url;
+
+  this_collection_url = $(this).find('.collection_name').prop("href");
+  this_collection_url += "&json";
+  collection_list = $("#collections_holder").html();
+  return $.ajax({
+    dataType: "json",
+    url: this_collection_url,
+    success: process_traits
+  });
+};
+
+submit_click = function() {
+  var all_vals, sample, samples, scatter_matrix, this_trait_vals, trait, trait_names, trait_vals_csv, traits, _i, _j, _len, _len1, _ref;
+  selected_traits = {};
+  traits = [];
+  $('#collections_holder').find('input[type=checkbox]:checked').each(function() {
+    var this_dataset, this_trait, this_trait_url;
+    this_trait = $(this).parents('tr').find('.trait').text();
+    this_dataset = $(this).parents('tr').find('.dataset').text();
+    this_trait_url = "/trait/get_sample_data?trait=" + this_trait + "&dataset=" + this_dataset;
+    return $.ajax({
+      dataType: "json",
+      url: this_trait_url,
+      async: false,
+      success: add_trait_data
+    });
+  });
+  trait_names = [];
+  samples = $('input[name=allsamples]').val().split(" ");
+  all_vals = [];
+  this_trait_vals = get_this_trait_vals(samples);
+  all_vals.push(this_trait_vals);
+  _ref = Object.keys(selected_traits);
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    trait = _ref[_i];
+    trait_names.push(trait);
+    this_trait_vals = [];
+    for (_j = 0, _len1 = samples.length; _j < _len1; _j++) {
+      sample = samples[_j];
+      if (__indexOf.call(Object.keys(selected_traits[trait]), sample) >= 0) {
+        this_trait_vals.push(parseFloat(selected_traits[trait][sample]));
+      } else {
+        this_trait_vals.push(null);
+      }
+    }
+    all_vals.push(this_trait_vals);
+  }
+  trait_vals_csv = create_trait_data_csv(selected_traits);
+  scatter_matrix = new ScatterMatrix(trait_vals_csv);
+  scatter_matrix.render();
+  return $.colorbox.close();
+};
+
+create_trait_data_csv = function(selected_traits) {
+  var all_vals, index, sample, sample_vals, samples, this_trait_vals, trait, trait_names, trait_vals_csv, _i, _j, _k, _l, _len, _len1, _len2, _len3, _ref;
+  trait_names = [];
+  trait_names.push($('input[name=trait_id]').val());
+  samples = $('input[name=allsamples]').val().split(" ");
+  all_vals = [];
+  this_trait_vals = get_this_trait_vals(samples);
+  all_vals.push(this_trait_vals);
+  _ref = Object.keys(selected_traits);
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    trait = _ref[_i];
+    trait_names.push(trait);
+    this_trait_vals = [];
+    for (_j = 0, _len1 = samples.length; _j < _len1; _j++) {
+      sample = samples[_j];
+      if (__indexOf.call(Object.keys(selected_traits[trait]), sample) >= 0) {
+        this_trait_vals.push(parseFloat(selected_traits[trait][sample]));
+      } else {
+        this_trait_vals.push(null);
+      }
+    }
+    all_vals.push(this_trait_vals);
+  }
+
+  trait_vals_csv = trait_names.join(",");
+  trait_vals_csv += "\n";
+  for (index = _k = 0, _len2 = samples.length; _k < _len2; index = ++_k) {
+    sample = samples[index];
+    if (all_vals[0][index] === null) {
+      continue;
+    }
+    sample_vals = [];
+    for (_l = 0, _len3 = all_vals.length; _l < _len3; _l++) {
+      trait = all_vals[_l];
+      sample_vals.push(trait[index]);
+    }
+    trait_vals_csv += sample_vals.join(",");
+    trait_vals_csv += "\n";
+  }
+  return trait_vals_csv;
+};
+
+trait_click = function() {
+  var dataset, this_trait_url, trait;
+
+  trait = $(this).parent().find('.trait').text();
+  dataset = $(this).parent().find('.dataset').text();
+  this_trait_url = "/trait/get_sample_data?trait=" + trait + "&dataset=" + dataset;
+  $.ajax({
+    dataType: "json",
+    url: this_trait_url,
+    success: get_trait_data
+  });
+  return $.colorbox.close();
+};
+
+trait_row_click = function() {
+  var dataset, this_trait_url, trait;
+  trait = $(this).find('.trait').text();
+  dataset = $(this).find('.dataset').data("dataset");
+  this_trait_url = "/trait/get_sample_data?trait=" + trait + "&dataset=" + dataset;
+  $.ajax({
+    dataType: "json",
+    url: this_trait_url,
+    success: get_trait_data
+  });
+  return $.colorbox.close();
+};
+
+add_trait_data = function(trait_data, textStatus, jqXHR) {
+  var trait_name, trait_sample_data;
+  trait_name = trait_data[0];
+  trait_sample_data = trait_data[1];
+  selected_traits[trait_name] = trait_sample_data;
+  return console.log("selected_traits:", selected_traits);
+};
+
+populate_cofactor_info = function(trait_info) {
+  if ($('input[name=selecting_which_cofactor]').val() == "1"){
+    $('#cofactor1_trait_link').attr("href", trait_info['url'])
+    if (trait_info['type'] == "ProbeSet"){
+      $('#cofactor1_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['tissue'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      $('#cofactor1_description').text("[" + trait_info['symbol'] + " on " + trait_info['location'] + " Mb]\n" + trait_info['description'])
+    } else if (trait_info['type'] == "Publish") {
+      $('#cofactor1_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      if ('pubmed_link' in trait_info) {
+        $('#cofactor1_description').html('<a href=\"' + trait_info['pubmed_link'] + '\">PubMed: ' + trait_info['pubmed_text'] + '</a><br>' + trait_info['description'])
+      } else {
+        $('#cofactor1_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+        $('#cofactor1_description').text("[" + trait_info['name'] + " on " + trait_info['location'] + " Mb]\n" + trait_info['description'])
+      }
+    } else {
+      $('#cofactor1_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      $('#cofactor1_description').text("[" + trait_info['name'] + " on " + trait_info['location'] + " Mb]\n")
+    }
+    $('#select_cofactor1').text("Change Cofactor 1");
+    $('#cofactor1_info_container').css("display", "inline");
+    $('#cofactor2_button').css("display", "inline-block");
+  } else if ($('input[name=selecting_which_cofactor]').val() == "2"){
+    $('#cofactor2_trait_link').attr("href", trait_info['url'])
+    if (trait_info['type'] == "ProbeSet"){
+      $('#cofactor2_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['tissue'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      $('#cofactor2_description').text("[" + trait_info['symbol'] + " on " + trait_info['location'] + " Mb]\n" + trait_info['description'])
+    } else if (trait_info['type'] == "Publish") {
+      $('#cofactor2_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      if ('pubmed_link' in trait_info) {
+        $('#cofactor2_description').html('<a href=\"' + trait_info['pubmed_link'] + '\">PubMed: ' + trait_info['pubmed_text'] + '</a><br>' + trait_info['description'])
+      } else {
+        $('#cofactor2_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+        $('#cofactor2_description').text("[" + trait_info['name'] + " on " + trait_info['location'] + " Mb]\n" + trait_info['description'])
+      }
+    } else {
+      $('#cofactor2_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      $('#cofactor2_description').text("[" + trait_info['name'] + " on " + trait_info['location'] + " Mb]\n")
+    }
+    $('#select_cofactor2').text("Change Cofactor 2");
+    $('#cofactor2_info_container').css("display", "inline");
+    $('#cofactor3_button').css("display", "inline-block");
+  } else {
+    $('#cofactor3_trait_link').attr("href", trait_info['url'])
+    if (trait_info['type'] == "ProbeSet"){
+      $('#cofactor3_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['tissue'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      $('#cofactor3_description').text("[" + trait_info['symbol'] + " on " + trait_info['location'] + " Mb]\n" + trait_info['description'])
+    } else if (trait_info['type'] == "Publish") {
+      $('#cofactor3_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      if ('pubmed_link' in trait_info) {
+        $('#cofactor3_description').html('<a href=\"' + trait_info['pubmed_link'] + '\">PubMed: ' + trait_info['pubmed_text'] + '</a><br>' + trait_info['description'])
+      } else {
+        $('#cofactor3_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+        $('#cofactor3_description').text("[" + trait_info['name'] + " on " + trait_info['location'] + " Mb]\n" + trait_info['description'])
+      }
+    } else {
+      $('#cofactor3_trait_link').text(trait_info['species'] + " " + trait_info['group'] + " " + trait_info['db'] + ": " + trait_info['name'])
+      $('#cofactor3_description').text("[" + trait_info['name'] + " on " + trait_info['location'] + " Mb]\n")
+    }
+    $('#select_cofactor3').text("Change Cofactor 3");
+    $('#cofactor3_info_container').css("display", "inline");
+  }
+}
+
+get_trait_data = function(trait_data, textStatus, jqXHR) {
+  var sample, samples, this_trait_vals, trait_sample_data, vals, _i, _len;
+  trait_sample_data = trait_data[1];
+  if ( $('input[name=allsamples]').length ) {
+    samples = $('input[name=allsamples]').val().split(" ");
+  } else {
+    samples = js_data.indIDs
+  }
+  sample_vals = [];
+  vals = [];
+  for (_i = 0, _len = samples.length; _i < _len; _i++) {
+    sample = samples[_i];
+    if (sample in trait_sample_data) {
+      sample_vals.push(sample + ":" + parseFloat(trait_sample_data[sample]))
+      vals.push(parseFloat(trait_sample_data[sample]))
+    } else {
+      sample_vals.push(null)
+      vals.push(null)
+    }
+  }
+  if ( $('input[name=allsamples]').length ) {
+    if ($('input[name=samples]').length < 1) {
+      $('#hidden_inputs').append('<input type="hidden" name="samples" value="[' + samples.toString() + ']" />');
+    }
+    $('#hidden_inputs').append('<input type="hidden" name="vals" value="[' + vals.toString() + ']" />');
+    this_trait_vals = get_this_trait_vals(samples);
+    return color_by_trait(trait_sample_data);
+  } else{
+    sorted = vals.slice().sort(function(a,b){return a-b})
+    ranks = vals.slice().map(function(v){ return sorted.indexOf(v)+1 });
+    sample_ranks = []
+    for (_i = 0; _i < samples.length; _i++){
+      if (samples[_i] in trait_sample_data){
+        sample_ranks.push(samples[_i] + ":" + ranks[_i])
+      } else {
+        sample_ranks.push(null)
+      }
+    }
+
+    if ($('input[name=selecting_which_cofactor]').val() == "1"){
+      if ($('#cofactor1_type option:selected').val() == "symbol") {
+        unique_vals = [...new Set(vals)]
+        if (unique_vals.length > 45) {
+          alert("If displaying cofactor as symbol, please choose a trait with 45 or fewer distinct sample values.");
+          return false;
+        }
+      }
+      $('input[name=cofactor1_vals]').val(sample_vals)
+      $('input[name=ranked_cofactor1_vals]').val(sample_ranks)
+    } else if ($('input[name=selecting_which_cofactor]').val() == "2"){
+      if ($('#cofactor2_type option:selected').val() == "symbol") {
+        unique_vals = [...new Set(vals)]
+        if (unique_vals.length > 45) {
+          alert("If displaying cofactor as symbol, please choose a trait with 45 or fewer distinct sample values.");
+          return false;
+        }
+      }
+      $('input[name=cofactor2_vals]').val(sample_vals)
+      $('input[name=ranked_cofactor2_vals]').val(sample_ranks)
+    } else{
+      if ($('#cofactor3_type option:selected').val() == "symbol") {
+        unique_vals = [...new Set(vals)]
+        if (unique_vals.length > 45) {
+          alert("If displaying cofactor as symbol, please choose a trait with 45 or fewer distinct sample values.");
+          return false;
+        }
+      }
+      $('input[name=cofactor3_vals]').val(sample_vals)
+      $('input[name=ranked_cofactor3_vals]').val(sample_ranks)
+    }
+    populate_cofactor_info(trait_data[0])
+    chartupdatedata();
+    return false
+  }
+};
+
+get_this_trait_vals = function(samples) {
+  var sample, this_trait_vals, this_val, this_vals_json, _i, _len;
+  this_trait_vals = [];
+  for (_i = 0, _len = samples.length; _i < _len; _i++) {
+    sample = samples[_i];
+    this_val = parseFloat($("input[name='value:" + sample + "']").val());
+    if (!isNaN(this_val)) {
+      this_trait_vals.push(this_val);
+    } else {
+      this_trait_vals.push(null);
+    }
+  }
+  this_vals_json = '[' + this_trait_vals.toString() + ']';
+  return this_trait_vals;
+};
+
+assemble_into_json = function(this_trait_vals) {
+  var json_data, json_ids, num_traits, samples;
+  num_traits = $('input[name=vals]').length;
+  samples = $('input[name=samples]').val();
+  json_ids = samples;
+  json_data = '[' + this_trait_vals;
+  $('input[name=vals]').each((function(_this) {
+    return function(index, element) {
+      return json_data += ',' + $(element).val();
+    };
+  })(this));
+  json_data += ']';
+  return [json_ids, json_data];
+};
+
+color_by_trait = function(trait_sample_data, textStatus, jqXHR) {
+  return root.bar_chart.color_by_trait(trait_sample_data);
+};
+
+process_traits = function(trait_data, textStatus, jqXHR) {
+  var the_html, trait, _i, _len;
+  the_html = "<button id='back_to_collections' class='btn btn-inverse btn-small'>";
+  the_html += "<i class='icon-white icon-arrow-left'></i> Back </button>";
+  the_html += "    <button id='submit_cofactors' class='btn btn-primary btn-small submit'> Submit </button>";
+  the_html += "<table id='collection_table' style='padding-top: 10px;' class='table table-hover'>";
+  the_html += "<thead><tr><th></th><th>Record</th><th>Data Set</th><th>Description</th></tr></thead>";
+  the_html += "<tbody>";
+  for (_i = 0, _len = trait_data.length; _i < _len; _i++) {
+    trait = trait_data[_i];
+    the_html += "<tr class='trait_line'>";
+    the_html += "<td class='select_trait'><input type='checkbox' name='selectCheck' class='checkbox edit_sample_checkbox'></td>";
+    if ("abbreviation" in trait) {
+        the_html += "<td class='trait' data-display_name='" + trait.name + " - " + trait.abbreviation + "'>" + trait.name + "</td>";
+    } else if ("symbol" in trait) {
+      the_html += "<td class='trait' data-display_name='" + trait.name + " - " + trait.symbol + "'>" + trait.name + "</td>";
+    } else {
+      the_html += "<td class='trait' data-display_name='" + trait.name + "'>" + trait.name + "</td>";
+    }
+    the_html += "<td class='dataset' data-dataset='" + trait.dataset + "'>" + trait.dataset_name + "</td>";
+    the_html += "<td class='description'>" + trait.description + "</td>";
+  }
+  the_html += "</tbody>";
+  the_html += "</table>";
+  the_html += "<script type='text/javascript' src='/static/new/javascript/get_traits_from_collection.js'></script>"
+  $("#collections_holder").html(the_html);
+  return $('#collections_holder').colorbox.resize();
+};
+
+back_to_collections = function() {
+  $("#collections_holder").html(collection_list);
+  $(document).on("click", ".collection_line", collection_click);
+  return $('#collections_holder').colorbox.resize();
+};
+
+$(".collection_line").on("click", collection_click);
+$("#submit_cofactors").on("click", submit_click);
+if ($('#scatterplot2').length){
+  $(".trait_line").on("click", trait_row_click);
+} else {
+  $(".trait").on("click", trait_click);
+}
+$("#back_to_collections").on("click", back_to_collections);
diff --git a/gn2/wqflask/static/new/javascript/group_manager.js b/gn2/wqflask/static/new/javascript/group_manager.js
new file mode 100644
index 00000000..cd56133a
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/group_manager.js
@@ -0,0 +1,37 @@
+$('#add_to_admins').click(function() {
+    add_emails('admin')
+})
+
+$('#add_to_members').click(function() {
+    add_emails('member')
+})
+
+$('#clear_admins').click(function(){
+    clear_emails('admin')
+})
+
+$('#clear_members').click(function(){
+    clear_emails('member')
+})
+
+
+function add_emails(user_type){
+    let email_address = $('input[name=user_email]').val();
+    let email_list_string = $('input[name=' + user_type + '_emails_to_add]').val().trim()
+    if (email_list_string == ""){
+        let email_set = new Set();
+    } else {
+        let email_set = new Set(email_list_string.split(","))
+    }
+    email_set.add(email_address)
+
+    $('input[name=' + user_type + '_emails_to_add]').val(Array.from(email_set).join(','))
+
+    let emails_display_string = Array.from(email_set).join('\n')
+    $('.added_' + user_type + 's').val(emails_display_string)
+}
+
+function clear_emails(user_type){
+    $('input[name=' + user_type + '_emails_to_add]').val("")
+    $('.added_' + user_type + 's').val("")
+}
diff --git a/gn2/wqflask/static/new/javascript/histogram.js b/gn2/wqflask/static/new/javascript/histogram.js
new file mode 100644
index 00000000..f71080e8
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/histogram.js
@@ -0,0 +1,134 @@
+// Generated by CoffeeScript 1.9.2
+(function() {
+  var Histogram, root;
+
+  root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+  Histogram = (function() {
+    function Histogram(sample_list1, sample_group) {
+      this.sample_list = sample_list1;
+      this.sample_group = sample_group;
+      this.sort_by = "name";
+      this.format_count = d3.format(",.0f");
+      this.margin = {
+        top: 10,
+        right: 30,
+        bottom: 30,
+        left: 30
+      };
+      this.plot_width = 960 - this.margin.left - this.margin.right;
+      this.plot_height = 500 - this.margin.top - this.margin.bottom;
+      this.x_buffer = this.plot_width / 20;
+      this.y_buffer = this.plot_height / 20;
+      this.plot_height -= this.y_buffer;
+      this.get_sample_vals(this.sample_list);
+      this.redraw(this.sample_vals);
+    }
+
+    Histogram.prototype.redraw = function(sample_vals) {
+      this.sample_vals = sample_vals;
+      this.y_min = d3.min(this.sample_vals);
+      this.y_max = d3.max(this.sample_vals) * 1.1;
+      this.create_x_scale();
+      this.get_histogram_data();
+      this.create_y_scale();
+      $("#histogram").empty();
+      this.svg = this.create_svg();
+      return this.create_graph();
+    };
+
+    Histogram.prototype.get_sample_vals = function(sample_list) {
+      var sample;
+      return this.sample_vals = (function() {
+        var i, len, results;
+        results = [];
+        for (i = 0, len = sample_list.length; i < len; i++) {
+          sample = sample_list[i];
+          if (sample.value !== null) {
+            results.push(sample.value);
+          }
+        }
+        return results;
+      })();
+    };
+
+    Histogram.prototype.create_svg = function() {
+      var svg;
+      svg = d3.select("#histogram").append("svg").attr("class", "histogram").attr("width", this.plot_width + this.margin.left + this.margin.right).attr("height", this.plot_height + this.margin.top + this.margin.bottom).append("g").attr("transform", "translate(" + this.margin.left + "," + this.margin.top + ")");
+      return svg;
+    };
+
+    Histogram.prototype.create_x_scale = function() {
+      var x0;
+      console.log("min/max:", d3.min(this.sample_vals) + "," + d3.max(this.sample_vals));
+      x0 = Math.max(-d3.min(this.sample_vals), d3.max(this.sample_vals));
+      return this.x_scale = d3.scale.linear().domain([d3.min(this.sample_vals), d3.max(this.sample_vals)]).range([0, this.plot_width]).nice();
+    };
+
+    Histogram.prototype.get_histogram_data = function() {
+      var n_bins;
+      console.log("sample_vals:", this.sample_vals);
+      n_bins = 2*Math.sqrt(this.sample_vals.length); //Was originally just the square root, but increased to 2*; ideally would be a GUI for changing this
+      this.histogram_data = d3.layout.histogram().bins(this.x_scale.ticks(n_bins))(this.sample_vals);
+      return console.log("histogram_data:", this.histogram_data[0]);
+    };
+
+    Histogram.prototype.create_y_scale = function() {
+      return this.y_scale = d3.scale.linear().domain([
+        0, d3.max(this.histogram_data, (function(_this) {
+          return function(d) {
+            return d.y;
+          };
+        })(this))
+      ]).range([this.plot_height, 0]);
+    };
+
+    Histogram.prototype.create_graph = function() {
+      this.add_x_axis();
+      this.add_y_axis();
+      return this.add_bars();
+    };
+
+    Histogram.prototype.add_x_axis = function() {
+      var x_axis;
+      x_axis = d3.svg.axis().scale(this.x_scale).orient("bottom");
+      return this.svg.append("g").attr("class", "x axis").attr("transform", "translate(0," + this.plot_height + ")").call(x_axis);
+    };
+
+    Histogram.prototype.add_y_axis = function() {
+      var yAxis;
+      yAxis = d3.svg.axis().scale(this.y_scale).orient("left").ticks(5);
+      return this.svg.append("g").attr("class", "y axis").call(yAxis).append("text").attr("transform", "rotate(-90)").attr("y", 6).attr("dy", ".71em").style("text-anchor", "end");
+    };
+
+    Histogram.prototype.add_bars = function() {
+      var bar, rect_width;
+      bar = this.svg.selectAll(".bar").data(this.histogram_data).enter().append("g").attr("class", "bar").attr("transform", (function(_this) {
+        return function(d) {
+          return "translate(" + _this.x_scale(d.x) + "," + _this.y_scale(d.y) + ")";
+        };
+      })(this));
+      rect_width = this.x_scale(this.histogram_data[0].x + this.histogram_data[0].dx) - this.x_scale(this.histogram_data[0].x);
+      bar.append("rect").attr("x", 1).attr("width", rect_width - 1).attr("height", (function(_this) {
+        return function(d) {
+          return _this.plot_height - _this.y_scale(d.y);
+        };
+      })(this));
+      return bar.append("text").attr("dy", ".75em").attr("y", 6).attr("x", rect_width / 2).attr("text-anchor", "middle").style("fill", "#fff").text((function(_this) {
+        return function(d) {
+          var bar_height;
+          bar_height = _this.plot_height - _this.y_scale(d.y);
+          if (bar_height > 20) {
+            return _this.format_count(d.y);
+          }
+        };
+      })(this));
+    };
+
+    return Histogram;
+
+  })();
+
+  root.Histogram = Histogram;
+
+}).call(this);
diff --git a/gn2/wqflask/static/new/javascript/init_genome_browser.js b/gn2/wqflask/static/new/javascript/init_genome_browser.js
new file mode 100644
index 00000000..508f5bf2
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/init_genome_browser.js
@@ -0,0 +1,82 @@
+snps_filename = "/browser_input?filename=" + js_data.browser_files[0]
+annot_filename = "/browser_input?filename=" + js_data.browser_files[1]
+
+localUrls =
+{
+  snps: snps_filename,
+  annotations: annot_filename
+};
+
+var coordinateSystem = js_data.chr_lengths
+
+var vscaleWidth = 90.0;
+var legendWidth = 150.0;
+
+if ('significant' in js_data) {
+  var significant_score = parseFloat(js_data.significant)
+} else {
+  var significant_score = js_data.max_score * 0.75
+}
+var score = { min: 0.0, max: js_data.max_score, sig: significant_score };
+var gwasPadding = { top: 35.0,
+                    bottom: 35.0,
+                    left: vscaleWidth,
+                    right: legendWidth };
+var gwasHeight = 500.0;
+var config =
+{   score: score,
+    urls: localUrls,
+    tracks: {
+        gwas: {
+            trackHeight: gwasHeight,
+            padding: gwasPadding,
+            snps: {
+                radius: 3.75,
+                lineWidth: 1.0,
+                color: { outline: "#FFFFFF",
+                         fill:    "#00008B" },
+                pixelOffset: {x: 0.0, y: 0.0}
+            },
+            annotations: {
+                urls: {
+                    url: "GeneNetwork"
+                },
+                radius: 5.5,
+                outline:   "#000000",
+                snpColor:  "#0074D9",
+                geneColor: "#FF4136"
+            },
+            score: score,
+            legend: {
+                fontSize: 14,
+                hPad: 0.1,
+                vPad: 0.2
+            },
+            vscale: {
+                color: "#000000",
+                hPad: 0.125,
+                numSteps: 3,
+                fonts: { labelSize: 18, scaleSize: 16 }
+            },
+        },
+    },
+    chrs: {
+        chrBG1: "#FFFFFF",
+        chrBG2: "#EEEEEE",
+        chrLabels: { fontSize: 16 },
+    },
+    // initialChrs: { left: "1", right: "5" }
+    coordinateSystem: coordinateSystem,
+};
+
+if (js_data.selected_chr != -1) {
+    config['initialChrs'] = {left: js_data.selected_chr, right: js_data.selected_chr}
+}
+
+$('#browser_tab').click(function() {
+  if ($('#gwas').length == 0){
+    GenomeBrowser.main(config)();
+  }
+});
+
+document.getElementById("controls").style.visibility = "visible";
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/initialize_show_trait_tables.js b/gn2/wqflask/static/new/javascript/initialize_show_trait_tables.js
new file mode 100644
index 00000000..44076c17
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/initialize_show_trait_tables.js
@@ -0,0 +1,246 @@
+// This file initializes the tables for the show_trait page
+
+// This variable is just created to get the column position of the first case attribute (if case attributes exist), since it's needed to set the row classes in createdRow for the DataTable
+var attributeStartPos = 3;
+if (js_data.se_exists) {
+  attributeStartPos += 2;
+}
+if (js_data.has_num_cases === true) {
+  attributeStartPos += 1;
+}
+
+buildColumns = function() {
+  let columnList = [
+    {
+      'data': null,
+      'orderDataType': "dom-checkbox",
+      'searchable' : false,
+      'targets': 0,
+      'width': "25px",
+      'render': function() {
+      return '<input type="checkbox" name="searchResult" class="checkbox edit_sample_checkbox" value="">'
+      }
+    },
+    {
+      'title': "ID",
+      'type': "natural",
+      'searchable' : false,
+      'targets': 1,
+      'width': "35px",
+      'data': "this_id"
+    },
+    {
+      'title': "Sample",
+      'type': "natural",
+      'data': null,
+      'targets': 2,
+      'width': "60px",
+      'render': function(data) {
+      return '<span class="edit_sample_sample_name">' + data.name + '</span>'
+      }
+    },
+    {
+      'title': "<div style='text-align: right;'>Value</div>",
+      'orderDataType': "dom-input",
+      'type': "cust-txt",
+      'data': null,
+      'targets': 3,
+      'width': "60px",
+      'render': function(data) {
+        if (data.value == null) {
+            return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" style="text-align: right;" class="trait_value_input edit_sample_value" value="x" size=' + js_data.max_digits[0] + '>'
+        } else {
+          if (js_data.no_decimal_place == false) {
+            return '<input type="text" data-value="' + data.value.toFixed(3) + '" data-qnorm="' + js_data['qnorm_values'][0][parseInt(data.this_id) - 1] + '" data-zscore="' + js_data['zscore_values'][0][parseInt(data.this_id) - 1] + '" name="value:' + data.name + '" class="trait_value_input edit_sample_value" value="' + data.value.toFixed(3) + '" size=' + js_data.max_digits[0] + '>'
+          } else {
+            return '<input type="text" data-value="' + data.value + '" data-qnorm="' + js_data['qnorm_values'][0][parseInt(data.this_id) - 1] + '" data-zscore="' + js_data['zscore_values'][0][parseInt(data.this_id) - 1] + '" name="value:' + data.name + '" class="trait_value_input edit_sample_value" value="' + data.value + '" size=' + js_data.max_digits[0] + '>'
+          }
+        }
+      }
+    }
+  ];
+
+  attrStart = 4
+  if (js_data.se_exists) {
+    attrStart += 2
+    columnList.push(
+      {
+        'bSortable': false,
+        'type': "natural",
+        'data': null,
+        'targets': 4,
+        'searchable' : false,
+        'width': "25px",
+        'render': function() {
+        return '±'
+        }
+      },
+      {
+        'title': "<div style='text-align: right;'>SE</div>",
+        'orderDataType': "dom-input",
+        'type': "cust-txt",
+        'data': null,
+        'targets': 5,
+        'width': "60px",
+        'render': function(data) {
+          if (data.variance == null) {
+              return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" class="trait_value_input edit_sample_se" value="x" size=6>'
+          } else {
+              return '<input type="text" data-value="' + data.variance.toFixed(3) + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" class="trait_value_input edit_sample_se" value="' + data.variance.toFixed(3) + '" size=6>'
+          }
+        }
+      }
+    );
+
+    if (js_data.has_num_cases === true) {
+      attrStart += 1
+      columnList.push(
+        {
+          'title': "<div style='text-align: right;'>N</div>",
+          'orderDataType': "dom-input",
+          'type': "cust-txt",
+          'data': null,
+          'targets': 6,
+          'width': "60px",
+          'render': function(data) {
+            if (data.num_cases == null || data.num_cases == undefined) {
+                return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" class="trait_value_input edit_sample_num_cases" value="x" size=4 maxlength=4>'
+            } else {
+                return '<input type="text" data-value="' + data.num_cases + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" class="trait_value_input edit_sample_num_cases" value="' + data.num_cases + '" size=4 maxlength=4>'
+            }
+          }
+        }
+      );
+    }
+  }
+  else {
+    if (js_data.has_num_cases === true) {
+      attrStart += 1
+      columnList.push(
+        {
+          'title': "<div style='text-align: right;'>N</div>",
+          'orderDataType': "dom-input",
+          'type': "cust-txt",
+          'data': null,
+          'targets': 4,
+          'width': "60px",
+          'render': function(data) {
+            if (data.num_cases == null || data.num_cases == undefined) {
+                return '<input type="text" data-value="x" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" class="trait_value_input edit_sample_num_cases" value="x" size=4 maxlength=4>'
+            } else {
+                return '<input type="text" data-value="' + data.num_cases + '" data-qnorm="x" data-zscore="x" name="value:' + data.name + '" class="trait_value_input edit_sample_num_cases" value="' + data.num_cases + '" size=4 maxlength=4>'
+            }
+          }
+        }
+      );
+    }
+  }
+
+  attrKeys = Object.keys(js_data.attributes).sort((a, b) => (js_data.attributes[a].id > js_data.attributes[b].id) ? 1 : -1)
+  for (i = 0; i < attrKeys.length; i++){
+    columnList.push(
+      {
+        'title': "<div title='" + js_data.attributes[attrKeys[i]].description + "' style='text-align: " + js_data.attributes[attrKeys[i]].alignment + "'>" + js_data.attributes[attrKeys[i]].name + "</div>",
+        'type': "natural",
+        'data': null,
+        'targets': attrStart + i,
+        'render': function(data, type, row, meta) {
+          attr_name = Object.keys(data.extra_attributes).sort((a, b) => (parseInt(a) > parseInt(b)) ? 1 : -1)[meta.col - data.first_attr_col]
+
+          if (attr_name != null && attr_name != undefined){
+            if (Array.isArray(data.extra_attributes[attr_name])){
+              return '<a href="' + data.extra_attributes[attr_name][1] + '">' + data.extra_attributes[attr_name][0] + '</a>'
+            } else {
+              return data.extra_attributes[attr_name]
+            }
+          } else {
+              return ""
+          }
+        }
+      }
+    )
+  }
+  return columnList
+}
+
+columnDefs = buildColumns();
+
+tableIds = ["samples_primary"]
+if (js_data.sample_lists.length > 1) {
+  tableIds.push("samples_other")
+}
+
+for (var i = 0; i < tableIds.length; i++) {
+  tableId = tableIds[i]
+
+  if (tableId == "samples_primary"){
+    tableType = "Primary"
+  } else {
+    tableType = "Other"
+  }
+
+  tableSettings = {
+    "drawCallback": function( settings ) {
+      $('#' + tableId + ' tr').off().on("click", function(event) {
+        if (event.target.type !== 'checkbox' && event.target.tagName.toLowerCase() !== 'a') {
+          var obj =$(this).find('input');
+          obj.prop('checked', !obj.is(':checked'));
+        }
+        if ($(this).hasClass("selected") && event.target.tagName.toLowerCase() !== 'a'){
+          $(this).removeClass("selected")
+        } else if (event.target.tagName.toLowerCase() !== 'a') {
+          $(this).addClass("selected")
+        }
+      });
+    },
+    'createdRow': function ( row, data, index ) {
+      $(row).attr('id', tableType + "_" + data.this_id)
+      $(row).addClass("value_se");
+      if (data.outlier) {
+        $(row).addClass("outlier");
+        $(row).attr("style", "background-color: orange;");
+      }
+      $('td', row).eq(1).addClass("column_name-Index")
+      $('td', row).eq(2).addClass("column_name-Sample")
+      $('td', row).eq(3).addClass("column_name-Value")
+      if (js_data.se_exists) {
+        $('td', row).eq(5).addClass("column_name-SE")
+        if (js_data.has_num_cases === true) {
+          $('td', row).eq(6).addClass("column_name-num_cases")
+        } else {
+          if (js_data.has_num_cases === true) {
+            $('td', row).eq(4).addClass("column_name-num_cases")
+          }
+        }
+      } else {
+        if (js_data.has_num_cases === true) {
+          $('td', row).eq(4).addClass("column_name-num_cases")
+        }
+      }
+  
+      for (j=0; j < attrKeys.length; j++) {
+        $('td', row).eq(attributeStartPos + j + 1).addClass("column_name-" + js_data.attributes[attrKeys[j]].name)
+        $('td', row).eq(attributeStartPos + j + 1).attr("style", "text-align: " + js_data.attributes[attrKeys[j]].alignment + "; padding-top: 2px; padding-bottom: 0px;")
+      }
+    }
+  }
+
+  create_table(tableId, js_data['sample_lists'][i], columnDefs, tableSettings);
+
+  // Enable mapping compute buttons and replace their text only after table has loaded
+  // This is because submitting the form prior to the table loading causes an error
+  $('button.submit_special').html('<span class="glyphicon glyphicon-play-circle"></span> Compute');
+  $('button.submit_special').prop('disabled', false);
+}
+
+primary_table = $('#samples_primary').DataTable();
+$('#primary_searchbox').on( 'keyup', function () {
+  primary_table.search($(this).val()).draw();
+} );
+
+if ($('#samples_other').length) {
+  other_table = $('#samples_other').DataTable();
+  $('#other_searchbox').on( 'keyup', function () {
+    other_table.search($(this).val()).draw();
+  } );
+}
diff --git a/gn2/wqflask/static/new/javascript/iplotMScanone_noeff.js b/gn2/wqflask/static/new/javascript/iplotMScanone_noeff.js
new file mode 100644
index 00000000..5ecf46e1
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/iplotMScanone_noeff.js
@@ -0,0 +1,114 @@
+// Generated by CoffeeScript 1.8.0
+var iplotMScanone_noeff, lod_data;
+
+iplotMScanone_noeff = function(lod_data, times, chartOpts) {
+  var axispos, chartdivid, chrGap, colors, darkrect, extra_digits, g_heatmap, g_lodchart, hbot, htop, i, lightrect, linecolor, linewidth, lod4curves, lod_labels, lod_ylab, lodchart_curves, lodcolumn, lodcurve, margin, mylodchart, mylodheatmap, nullcolor, nxticks, plotLodCurve, pos, svg, titlepos, totalh, totalw, wleft, wright, x, xticks, y, zlim, zthresh, _ref, _ref1, _ref10, _ref11, _ref12, _ref13, _ref14, _ref15, _ref16, _ref17, _ref18, _ref19, _ref2, _ref20, _ref3, _ref4, _ref5, _ref6, _ref7, _ref8, _ref9;
+  wleft = (_ref = chartOpts != null ? chartOpts.wleft : void 0) != null ? _ref : 1000;
+  wright = (_ref1 = chartOpts != null ? chartOpts.wright : void 0) != null ? _ref1 : 500;
+  htop = (_ref2 = chartOpts != null ? chartOpts.htop : void 0) != null ? _ref2 : 350;
+  hbot = (_ref3 = chartOpts != null ? chartOpts.hbot : void 0) != null ? _ref3 : 350;
+  margin = (_ref4 = chartOpts != null ? chartOpts.margin : void 0) != null ? _ref4 : {
+    left: 100,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  axispos = (_ref5 = chartOpts != null ? chartOpts.axispos : void 0) != null ? _ref5 : {
+    xtitle: 25,
+    ytitle: 30,
+    xlabel: 5,
+    ylabel: 5
+  };
+  titlepos = (_ref6 = chartOpts != null ? chartOpts.titlepos : void 0) != null ? _ref6 : 20;
+  chrGap = (_ref7 = chartOpts != null ? chartOpts.chrGap : void 0) != null ? _ref7 : 8;
+  darkrect = (_ref8 = chartOpts != null ? chartOpts.darkrect : void 0) != null ? _ref8 : "#C8C8C8";
+  lightrect = (_ref9 = chartOpts != null ? chartOpts.lightrect : void 0) != null ? _ref9 : "#E6E6E6";
+  nullcolor = (_ref10 = chartOpts != null ? chartOpts.nullcolor : void 0) != null ? _ref10 : "#E6E6E6";
+  colors = (_ref11 = chartOpts != null ? chartOpts.colors : void 0) != null ? _ref11 : ["slateblue", "white", "crimson"];
+  zlim = (_ref12 = chartOpts != null ? chartOpts.zlim : void 0) != null ? _ref12 : null;
+  zthresh = (_ref13 = chartOpts != null ? chartOpts.zthresh : void 0) != null ? _ref13 : null;
+  lod_ylab = (_ref14 = chartOpts != null ? chartOpts.lod_ylab : void 0) != null ? _ref14 : "";
+  linecolor = (_ref15 = chartOpts != null ? chartOpts.linecolor : void 0) != null ? _ref15 : "darkslateblue";
+  linewidth = (_ref16 = chartOpts != null ? chartOpts.linewidth : void 0) != null ? _ref16 : 2;
+  nxticks = (_ref17 = chartOpts != null ? chartOpts.nxticks : void 0) != null ? _ref17 : 5;
+  xticks = (_ref18 = chartOpts != null ? chartOpts.xticks : void 0) != null ? _ref18 : null;
+  lod_labels = (_ref19 = chartOpts != null ? chartOpts.lod_labels : void 0) != null ? _ref19 : null;
+  chartdivid = (_ref20 = chartOpts != null ? chartOpts.chartdivid : void 0) != null ? _ref20 : 'chart';
+  totalh = htop + hbot + 2 * (margin.top + margin.bottom);
+  totalw = wleft + wright + 2 * (margin.left + margin.right);
+  if (lod_labels == null) {
+    lod_labels = times != null ? (function() {
+      var _i, _len, _results;
+      _results = [];
+      for (_i = 0, _len = times.length; _i < _len; _i++) {
+        x = times[_i];
+        _results.push(formatAxis(times, extra_digits = 1)(x));
+      }
+      return _results;
+    })() : lod_data.lodnames;
+  }
+  mylodheatmap = lodheatmap().height(htop).width(wleft).margin(margin).axispos(axispos);
+  svg = d3.select("div#" + chartdivid).append("svg").attr("height", totalh).attr("width", totalw);
+  g_heatmap = svg.append("g").attr("id", "heatmap").datum(lod_data).call(mylodheatmap);
+  mylodchart = lodchart().height(hbot).width(wleft).margin(margin).axispos(axispos).titlepos(titlepos).chrGap(chrGap).linecolor("none").pad4heatmap(true).darkrect(darkrect).lightrect(lightrect).ylim([0, d3.max(mylodheatmap.zlim())]).pointsAtMarkers(false);
+  g_lodchart = svg.append("g").attr("transform", "translate(0," + (htop + margin.top + margin.bottom) + ")").attr("id", "lodchart").datum(lod_data).call(mylodchart);
+  lodcurve = function(chr, lodcolumn) {
+    return d3.svg.line().x(function(d) {
+      return mylodchart.xscale()[chr](d);
+    }).y(function(d, i) {
+      return mylodchart.yscale()(Math.abs(lod_data.lodByChr[chr][i][lodcolumn]));
+    });
+  };
+  lodchart_curves = null;
+  plotLodCurve = function(lodcolumn) {
+    var chr, _i, _len, _ref21, _results;
+    g_lodchart.selectAll("g#curves").remove();
+    lodchart_curves = g_lodchart.append("g").attr("id", "lodcurves");
+    _ref21 = lod_data.chrnames;
+    _results = [];
+    for (_i = 0, _len = _ref21.length; _i < _len; _i++) {
+      chr = _ref21[_i];
+      _results.push(lodchart_curves.append("path").datum(lod_data.posByChr[chr[0]]).attr("d", lodcurve(chr[0], lodcolumn)).attr("stroke", linecolor).attr("fill", "none").attr("stroke-width", linewidth).style("pointer-events", "none"));
+    }
+    return _results;
+  };
+  lod4curves = {
+    data: []
+  };
+  for (pos in lod_data.pos) {
+    y = (function() {
+      var _i, _len, _ref21, _results;
+      _ref21 = lod_data.lodnames;
+      _results = [];
+      for (_i = 0, _len = _ref21.length; _i < _len; _i++) {
+        lodcolumn = _ref21[_i];
+        _results.push(Math.abs(lod_data[lodcolumn][pos]));
+      }
+      return _results;
+    })();
+    x = (function() {
+      var _results;
+      _results = [];
+      for (i in lod_data.lodnames) {
+        _results.push(+i);
+      }
+      return _results;
+    })();
+    lod4curves.data.push({
+      x: x,
+      y: y
+    });
+  }
+  return mylodheatmap.cellSelect().on("mouseover", function(d) {
+    var p;
+    plotLodCurve(d.lodindex);
+    g_lodchart.select("g.title text").text("" + lod_labels[d.lodindex]);
+    return p = d3.format(".1f")(d.pos);
+  }).on("mouseout", function(d) {
+    lodchart_curves.remove();
+    return g_lodchart.select("g.title text").text("");
+  });
+};
+
+iplotMScanone_noeff(lod_data = js_data.json_data);
diff --git a/gn2/wqflask/static/new/javascript/loadings_plot.js b/gn2/wqflask/static/new/javascript/loadings_plot.js
new file mode 100644
index 00000000..c44288c0
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/loadings_plot.js
@@ -0,0 +1,109 @@
+var margin = {top: 20, right: 70, bottom: 60, left: 60}
+  , width = 960 - margin.left - margin.right
+  , height = 500 - margin.top - margin.bottom;
+    
+var x = d3.scale.linear()
+          .domain([d3.min(loadings, function(d) { return d[0]; }) + 0.1*d3.min(loadings, function(d) { return d[0]; }), d3.max(loadings, function(d) { return d[0]; })])
+          .range([ 0, width ]);
+    
+var y = d3.scale.linear()
+    	  .domain([d3.min(loadings, function(d) { return d[1]; }) + 0.1*d3.min(loadings, function(d) { return d[1]; }), d3.max(loadings, function(d) { return d[1]; })])
+    	  .range([ height, 0 ]);
+ 
+var chart = d3.select('#loadings_plot')
+    .append('svg:svg')
+    .attr('width', width + margin.right + margin.left)
+    .attr('height', height + margin.top + margin.bottom)
+    .attr('class', 'chart')
+
+var main = chart.append('g')
+    .attr('transform', 'translate(' + margin.left + ',' + margin.top + ')')
+    .attr('width', width)
+    .attr('height', height)
+    .attr('class', 'main')   
+        
+// draw the x axis
+var xAxis = d3.svg.axis()
+    .scale(x)
+    .orient('bottom');
+
+main.append('g')
+    .attr('transform', 'translate(0,' + height + ')')
+    .attr('class', 'x axis')
+    .call(xAxis);
+    
+chart.append("text")
+    .attr("class", "x label")
+    .attr("text-anchor", "end")
+    .attr("x", 550)
+    .attr("y", 480)
+    .style("font-size", 14)
+    .style("fill", "blue")
+    .text("Factor (1)");
+    
+chart.append("text")
+    .attr("class", "y label")
+    .attr("text-anchor", "end")
+    .attr("x", -200)
+    .attr("y", 5)
+    .attr("dy", ".75em")
+    .attr("transform", "rotate(-90)")
+    .style("font-size", 14)
+    .style("fill", "blue")
+    .text("Factor (2)");
+
+// draw the y axis
+var yAxis = d3.svg.axis()
+    .scale(y)
+    .orient('left');
+
+main.append('g')
+    .attr('transform', 'translate(0,0)')
+    .attr('class', 'y axis')
+    .call(yAxis);
+
+chart.select('.x.axis')
+    .selectAll("text")
+        .style("font-size","14px");
+        
+chart.select('.y.axis')
+    .selectAll("text")
+        .style("font-size","14px");
+    
+var g = main.append("svg:g"); 
+    
+g.selectAll("scatter-dots")
+  .data(loadings)
+  .enter().append("svg:circle")
+            .attr("cx", function (d,i) { return x(d[0]); } )
+            .attr("cy", function (d) { return y(d[1]); } )
+            .attr("r", 4)
+            .style("fill", "blue");
+       
+traits_and_loadings = []
+for (i = 0; i < js_data.traits.length; i++) {
+    this_trait_loadings = []
+    this_trait_loadings[0] = js_data.traits[i]
+    this_trait_loadings[1] = [loadings[i][0], loadings[i][1]]  
+    traits_and_loadings[i] = this_trait_loadings
+}
+       
+g.selectAll("scatter-dots")
+  .data(traits_and_loadings)
+  .enter().append("text")
+            .attr("x", function(d, i) { return x(d[1][0]); })
+            .attr("y", function(d) { return y(d[1][1]); })
+            .text(function(d) { return d[0]; })
+                .style("font-size", 12)
+                .style("fill", "blue");
+            
+g.selectAll("scatter-lines")
+  .data(loadings)
+  .enter().append("svg:line")
+            .attr("x1", x(0))
+            .attr("y1", y(0))
+            .attr("x2", function (d,i) {return x(d[0]); } )
+            .attr("y2", function (d) { return y(d[1]); } )
+            .attr("stroke-width", 1)
+            .attr("stroke", "red");
+      
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/lod_chart.js b/gn2/wqflask/static/new/javascript/lod_chart.js
new file mode 100644
index 00000000..014bf59b
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/lod_chart.js
@@ -0,0 +1,473 @@
+// Generated by CoffeeScript 1.9.2
+var lodchart;
+
+lodchart = function() {
+  var additive, additive_ylab, additive_ylim, additive_yscale, additive_yticks, additivelinecolor, axispos, chart, chrGap, chrSelect, darkrect, height, lightrect, linewidth, lodcurve, lodlinecolor, lodvarname, manhattanPlot, mappingScale, margin, markerSelect, nyticks, pad4heatmap, pointcolor, pointsAtMarkers, pointsize, pointstroke, rotate_ylab, significantcolor, suggestivecolor, title, titlepos, width, xlab, xscale, ylab, ylim, yscale, yticks;
+  width = 800;
+  height = 500;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  axispos = {
+    xtitle: 25,
+    ytitle: 30,
+    xlabel: 5,
+    ylabel: 5
+  };
+  titlepos = 20;
+  manhattanPlot = false;
+  ylim = null;
+  additive_ylim = null;
+  nyticks = 5;
+  yticks = null;
+  additive_yticks = null;
+  chrGap = 8;
+  darkrect = "#F1F1F9";
+  lightrect = "#FBFBFF";
+  lodlinecolor = "darkslateblue";
+  additivelinecolor_plus = "red";
+  additivelinecolor_negative = "green";
+  linewidth = 2;
+  suggestivecolor = "gainsboro";
+  significantcolor = "#EBC7C7";
+  pointcolor = "#E9CFEC";
+  pointsize = 0;
+  pointstroke = "black";
+  title = "";
+  xlab = "Chromosome";
+  ylab = "LRS score";
+  additive_ylab = "Additive Effect";
+  rotate_ylab = null;
+  yscale = d3.scale.linear();
+  additive_yscale = d3.scale.linear();
+  xscale = null;
+  pad4heatmap = false;
+  lodcurve = null;
+  lodvarname = null;
+  markerSelect = null;
+  chrSelect = null;
+  pointsAtMarkers = true;
+  chart = function(selection) {
+    return selection.each(function(data) {
+      var additive_yaxis, additivecurve, chr, curves, g, gEnter, hiddenpoints, j, k, len, len1, lodvarnum, markerpoints, markertip, redraw_plot, ref, ref1, rotate_additive_ylab, suggestive_bar, svg, titlegrp, x, xaxis, yaxis;
+      if (manhattanPlot === true) {
+        pointcolor = "darkslateblue";
+        pointsize = 2;
+      }
+      lodvarname = lodvarname != null ? lodvarname : data.lodnames[0];
+      data[lodvarname] = (function() {
+        var j, len, ref, results;
+        ref = data[lodvarname];
+        results = [];
+        for (j = 0, len = ref.length; j < len; j++) {
+          x = ref[j];
+          results.push(Math.abs(x));
+        }
+        return results;
+      })();
+      ylim = ylim != null ? ylim : [0, d3.max(data[lodvarname])];
+
+      if ('additive' in data) {
+        data['additive'] = (function() {
+          var j, len, ref, results;
+          ref = data['additive'];
+          results = [];
+          for (j = 0, len = ref.length; j < len; j++) {
+            x = ref[j];
+            results.push(x);
+          }
+          return results;
+        })();
+        additive_ylim = additive_ylim != null ? additive_ylim : [0, d3.max(data['additive'])];
+      }
+      lodvarnum = data.lodnames.indexOf(lodvarname);
+      svg = d3.select(this).selectAll("svg").data([data]);
+      gEnter = svg.enter().append("svg").append("g");
+      svg.attr("width", width + margin.left + margin.right).attr("height", height + margin.top + margin.bottom);
+      g = svg.select("g");
+      g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", height).attr("width", width).attr("fill", darkrect).attr("stroke", "none");
+      yscale.domain(ylim).range([height + margin.top, margin.top + margin.inner]);
+      yticks = yticks != null ? yticks : yscale.ticks(nyticks);
+      if ('additive' in data) {
+        additive_yscale.domain(additive_ylim).range([height + margin.top, margin.top + margin.inner + height / 2]);
+        additive_yticks = additive_yticks != null ? additive_yticks : additive_yscale.ticks(nyticks);
+      }
+      reorgLodData(data, lodvarname);
+      data = chrscales(data, width, chrGap, margin.left, pad4heatmap, mappingScale);
+      xscale = data.xscale;
+      chrSelect = g.append("g").attr("class", "chrRect").selectAll("empty").data(data.chrnames).enter().append("rect").attr("id", function(d) {
+        return "chrrect" + d[0];
+      }).attr("x", function(d, i) {
+        if (i === 0 && pad4heatmap) {
+          return data.chrStart[i];
+        }
+        return data.chrStart[i] - chrGap / 2;
+      }).attr("width", function(d, i) {
+        if ((i === 0 || i + 1 === data.chrnames.length) && pad4heatmap) {
+          return data.chrEnd[i] - data.chrStart[i] + chrGap / 2;
+        }
+        return data.chrEnd[i] - data.chrStart[i] + chrGap;
+      }).attr("y", margin.top).attr("height", height).attr("fill", function(d, i) {
+        if (i % 2) {
+          return darkrect;
+        }
+        return lightrect;
+      }).attr("stroke", "none").on("click", function(d) {
+        console.log("d is:", d);
+        return redraw_plot(d);
+      });
+      xaxis = g.append("g").attr("class", "x axis");
+      xaxis.selectAll("empty").data(data.chrnames).enter().append("text").text(function(d) {
+        return d[0];
+      }).attr("x", function(d, i) {
+        return (data.chrStart[i] + data.chrEnd[i]) / 2;
+      }).attr("y", margin.top + height + axispos.xlabel).attr("dominant-baseline", "hanging").attr("text-anchor", "middle").attr("cursor", "pointer").on("click", function(d) {
+        return redraw_plot(d);
+      });
+      xaxis.append("text").attr("class", "title").attr("y", margin.top + height + axispos.xtitle).attr("x", margin.left + width / 2).attr("fill", "slateblue").text(xlab);
+      redraw_plot = function(chr_ob) {
+        var chr_plot;
+        $('#topchart').remove();
+        $('#chart_container').append('<div class="qtlcharts" id="topchart"></div>');
+        return chr_plot = new Chr_Lod_Chart(600, 1200, chr_ob, manhattanPlot, mappingScale);
+      };
+      rotate_ylab = rotate_ylab != null ? rotate_ylab : ylab.length > 1;
+      yaxis = g.append("g").attr("class", "y axis");
+      yaxis.selectAll("empty").data(yticks).enter().append("line").attr("y1", function(d) {
+        return yscale(d);
+      }).attr("y2", function(d) {
+        return yscale(d);
+      }).attr("x1", margin.left).attr("x2", margin.left + 7).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
+      yaxis.selectAll("empty").data(yticks).enter().append("text").attr("y", function(d) {
+        return yscale(d);
+      }).attr("x", margin.left - axispos.ylabel).attr("fill", "blue").attr("dominant-baseline", "middle").attr("text-anchor", "end").text(function(d) {
+        return formatAxis(yticks)(d);
+      });
+      yaxis.append("text").attr("class", "title").attr("y", margin.top + height / 2).attr("x", margin.left - axispos.ytitle).text(ylab).attr("transform", rotate_ylab ? "rotate(270," + (margin.left - axispos.ytitle) + "," + (margin.top + height / 2) + ")" : "").attr("text-anchor", "middle").attr("fill", "slateblue");
+      if ('additive' in data) {
+        rotate_additive_ylab = rotate_additive_ylab != null ? rotate_additive_ylab : additive_ylab.length > 1;
+        additive_yaxis = g.append("g").attr("class", "y axis");
+        additive_yaxis.selectAll("empty").data(additive_yticks).enter().append("line").attr("y1", function(d) {
+          return additive_yscale(d);
+        }).attr("y2", function(d) {
+          return additive_yscale(d);
+        }).attr("x1", margin.left + width).attr("x2", margin.left + width - 7).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
+        additive_yaxis.selectAll("empty").data(additive_yticks).enter().append("text").attr("y", function(d) {
+          return additive_yscale(d);
+        }).attr("x", function(d) {
+          return margin.left + width + axispos.ylabel + 20;
+        }).attr("fill", "green").attr("dominant-baseline", "middle").attr("text-anchor", "end").text(function(d) {
+          return formatAxis(additive_yticks)(d);
+        });
+        additive_yaxis.append("text").attr("class", "title").attr("y", margin.top + 1.5 * height).attr("x", margin.left + width + axispos.ytitle).text(additive_ylab).attr("transform", rotate_additive_ylab ? "rotate(270," + (margin.left + width + axispos.ytitle) + ", " + (margin.top + height * 1.5) + ")" : "").attr("text-anchor", "middle").attr("fill", "green");
+      }
+      if ('suggestive' in data) {
+        suggestive_bar = g.append("g").attr("class", "suggestive");
+        suggestive_bar.selectAll("empty").data([data.suggestive]).enter().append("line").attr("y1", function(d) {
+          return yscale(d);
+        }).attr("y2", function(d) {
+          return yscale(d);
+        }).attr("x1", margin.left).attr("x2", margin.left + width).attr("fill", "none").attr("stroke", suggestivecolor).attr("stroke-width", 5).style("pointer-events", "none");
+        suggestive_bar = g.append("g").attr("class", "significant");
+        suggestive_bar.selectAll("empty").data([data.significant]).enter().append("line").attr("y1", function(d) {
+          return yscale(d);
+        }).attr("y2", function(d) {
+          return yscale(d);
+        }).attr("x1", margin.left).attr("x2", margin.left + width).attr("fill", "none").attr("stroke", significantcolor).attr("stroke-width", 5).style("pointer-events", "none");
+      }
+      if (manhattanPlot === false) {
+        lodcurve = function(chr, lodcolumn) {
+          return d3.svg.line().x(function(d) {
+            return xscale[chr](d);
+          }).y(function(d, i) {
+            return yscale(data.lodByChr[chr][i][lodcolumn]);
+          });
+        };
+        if ('additive' in data) {
+          additivecurve = function(chr, lodcolumn) {
+            if (data.additiveByChr[chr][0] < 0) {
+              pos_neg = "negative"
+            }
+            else {
+              pos_neg = "positive"
+            }
+            return [pos_neg, d3.svg.line().x(function(d) {
+              return xscale[chr](d);
+            }).y(function(d, i) {
+              return additive_yscale(Math.abs(data.additiveByChr[chr][i]));
+            })];
+          };
+        }
+        curves = g.append("g").attr("id", "curves");
+        ref = data.chrnames;
+        for (j = 0, len = ref.length; j < len; j++) {
+          chr = ref[j];
+          if (chr.indexOf(data['chr'])) {
+            curves.append("path").datum(data.posByChr[chr[0]]).attr("d", lodcurve(chr[0], lodvarnum)).attr("stroke", lodlinecolor).attr("fill", "none").attr("stroke-width", linewidth).style("pointer-events", "none");
+          }
+        }
+        if ('additive' in data) {
+          ref1 = data.chrnames;
+          for (k = 0, len1 = ref1.length; k < len1; k++) {
+            chr = ref1[k];
+            if (chr.indexOf(data['chr'])) {
+              if (additivecurve(chr[0], lodvarnum)[0] == "negative") {
+                curves.append("path").datum(data.posByChr[chr[0]]).attr("d", additivecurve(chr[0], lodvarnum)[1]).attr("stroke", additivelinecolor_negative).attr("fill", "none").attr("stroke-width", 1).style("pointer-events", "none");
+              }
+              else {
+                curves.append("path").datum(data.posByChr[chr[0]]).attr("d", additivecurve(chr[0], lodvarnum)[1]).attr("stroke", additivelinecolor_plus).attr("fill", "none").attr("stroke-width", 1).style("pointer-events", "none");
+              }
+            }
+          }
+        }
+      }
+      console.log("before pointsize");
+      if (pointsize > 0) {
+        console.log("pointsize > 0 !!!");
+      }
+      markerpoints = g.append("g").attr("id", "markerpoints_visible");
+      markerpoints.selectAll("empty").data(data.markers).enter().append("circle").attr("cx", function(d) {
+        return xscale[d.chr](d.pos);
+      }).attr("cy", function(d) {
+        return yscale(d.lod);
+      }).attr("r", pointsize).attr("fill", pointcolor).attr("stroke", pointstroke).attr("pointer-events", "hidden");
+      titlegrp = g.append("g").attr("class", "title").append("text").attr("x", margin.left + width / 2).attr("y", margin.top - titlepos).text(title);
+      g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", height).attr("width", function() {
+        if (pad4heatmap) {
+          return data.chrEnd.slice(-1)[0] - margin.left;
+        }
+        return data.chrEnd.slice(-1)[0] - margin.left + chrGap / 2;
+      }).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+      if (pointsAtMarkers) {
+        hiddenpoints = g.append("g").attr("id", "markerpoints_hidden");
+        markertip = d3.tip().attr('class', 'd3-tip').html(function(d) {
+          return [d.name, " LRS = " + (d3.format('.2f')(d.lod))];
+        }).direction("e").offset([0, 10]);
+        svg.call(markertip);
+        return markerSelect = hiddenpoints.selectAll("empty").data(data.markers).enter().append("circle").attr("cx", function(d) {
+          return xscale[d.chr](d.pos);
+        }).attr("cy", function(d) {
+          return yscale(d.lod);
+        }).attr("id", function(d) {
+          return d.name;
+        }).attr("r", d3.max([pointsize * 2, 3])).attr("opacity", 0).attr("fill", pointcolor).attr("stroke", pointstroke).attr("stroke-width", "1").on("mouseover.paneltip", function(d) {
+          d3.select(this).attr("opacity", 1);
+          return markertip.show(d);
+        }).on("mouseout.paneltip", function() {
+          return d3.select(this).attr("opacity", 0).call(markertip.hide);
+        });
+      }
+    });
+  };
+  chart.width = function(value) {
+    if (!arguments.length) {
+      return width;
+    }
+    width = value;
+    return chart;
+  };
+  chart.height = function(value) {
+    if (!arguments.length) {
+      return height;
+    }
+    height = value;
+    return chart;
+  };
+  chart.margin = function(value) {
+    if (!arguments.length) {
+      return margin;
+    }
+    margin = value;
+    return chart;
+  };
+  chart.titlepos = function(value) {
+    if (!arguments.length) {
+      return titlepos;
+    }
+    titlepos;
+    return chart;
+  };
+  chart.axispos = function(value) {
+    if (!arguments.length) {
+      return axispos;
+    }
+    axispos = value;
+    return chart;
+  };
+  chart.manhattanPlot = function(value) {
+    if (!arguments.length) {
+      return manhattanPlot;
+    }
+    manhattanPlot = value;
+    return chart;
+  };
+  chart.mappingScale = function(value) {
+    if (!arguments.length) {
+      return mappingScale;
+    }
+    mappingScale = value;
+    return chart;
+  };
+  chart.ylim = function(value) {
+    if (!arguments.length) {
+      return ylim;
+    }
+    ylim = value;
+    return chart;
+  };
+  chart.additive_ylim = function(value) {
+    if (!arguments.length) {
+      return additive_ylim;
+    }
+    additive_ylim = value;
+    return chart;
+  };
+  chart.nyticks = function(value) {
+    if (!arguments.length) {
+      return nyticks;
+    }
+    nyticks = value;
+    return chart;
+  };
+  chart.yticks = function(value) {
+    if (!arguments.length) {
+      return yticks;
+    }
+    yticks = value;
+    return chart;
+  };
+  chart.chrGap = function(value) {
+    if (!arguments.length) {
+      return chrGap;
+    }
+    chrGap = value;
+    return chart;
+  };
+  chart.darkrect = function(value) {
+    if (!arguments.length) {
+      return darkrect;
+    }
+    darkrect = value;
+    return chart;
+  };
+  chart.lightrect = function(value) {
+    if (!arguments.length) {
+      return lightrect;
+    }
+    lightrect = value;
+    return chart;
+  };
+  chart.linecolor = function(value) {
+    var linecolor;
+    if (!arguments.length) {
+      return linecolor;
+    }
+    linecolor = value;
+    return chart;
+  };
+  chart.linewidth = function(value) {
+    if (!arguments.length) {
+      return linewidth;
+    }
+    linewidth = value;
+    return chart;
+  };
+  chart.pointcolor = function(value) {
+    if (!arguments.length) {
+      return pointcolor;
+    }
+    pointcolor = value;
+    return chart;
+  };
+  chart.pointsize = function(value) {
+    if (!arguments.length) {
+      return pointsize;
+    }
+    pointsize = value;
+    return chart;
+  };
+  chart.pointstroke = function(value) {
+    if (!arguments.length) {
+      return pointstroke;
+    }
+    pointstroke = value;
+    return chart;
+  };
+  chart.title = function(value) {
+    if (!arguments.length) {
+      return title;
+    }
+    title = value;
+    return chart;
+  };
+  chart.xlab = function(value) {
+    if (!arguments.length) {
+      return xlab;
+    }
+    xlab = value;
+    return chart;
+  };
+  chart.ylab = function(value) {
+    if (!arguments.length) {
+      return ylab;
+    }
+    ylab = value;
+    return chart;
+  };
+  chart.rotate_ylab = function(value) {
+    if (!arguments.length) {
+      return rotate_ylab;
+    }
+    rotate_ylab = value;
+    return chart;
+  };
+  chart.lodvarname = function(value) {
+    if (!arguments.length) {
+      return lodvarname;
+    }
+    lodvarname = value;
+    return chart;
+  };
+  chart.pad4heatmap = function(value) {
+    if (!arguments.length) {
+      return pad4heatmap;
+    }
+    pad4heatmap = value;
+    return chart;
+  };
+  chart.pointsAtMarkers = function(value) {
+    if (!arguments.length) {
+      return pointsAtMarkers;
+    }
+    pointsAtMarkers = value;
+    return chart;
+  };
+  chart.yscale = function() {
+    return yscale;
+  };
+  chart.additive_yscale = function() {
+    return additive_yscale;
+  };
+  chart.xscale = function() {
+    return xscale;
+  };
+  if (manhattanPlot === false) {
+    chart.lodcurve = function() {
+      return lodcurve;
+    };
+  }
+  chart.additivecurve = function() {
+    return additivecurve;
+  };
+  chart.markerSelect = function() {
+    return markerSelect;
+  };
+  chart.chrSelect = function() {
+    return chrSelect;
+  };
+  return chart;
+};
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/lodheatmap.js b/gn2/wqflask/static/new/javascript/lodheatmap.js
new file mode 100644
index 00000000..b82c95ad
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/lodheatmap.js
@@ -0,0 +1,277 @@
+// Generated by CoffeeScript 1.8.0
+var lodheatmap;
+
+lodheatmap = function() {
+  var axispos, cellSelect, chart, chrGap, colors, height, margin, rectcolor, rotate_ylab, title, titlepos, width, xlab, xscale, ylab, yscale, zlim, zscale, zthresh;
+  width = 1200;
+  height = 600;
+  margin = {
+    left: 100,
+    top: 40,
+    right: 40,
+    bottom: 40
+  };
+  axispos = {
+    xtitle: 25,
+    ytitle: 30,
+    xlabel: 5,
+    ylabel: 5
+  };
+  chrGap = 8;
+  titlepos = 20;
+  rectcolor = d3.rgb(230, 230, 230);
+  colors = ["slateblue", "white", "red"];
+  title = "";
+  xlab = "Chromosome";
+  ylab = "";
+  rotate_ylab = null;
+  zlim = null;
+  zthresh = null;
+  xscale = d3.scale.linear();
+  yscale = d3.scale.linear();
+  zscale = d3.scale.linear();
+  cellSelect = null;
+  chart = function(selection) {
+    return selection.each(function(data) {
+      var cells, celltip, chr, chr_ob, extent, g, gEnter, i, j, lod, lodcol, nlod, pos, rectHeight, svg, titlegrp, xLR, xaxis, yaxis, zmax, zmin, _i, _j, _k, _l, _len, _len1, _len2, _len3, _len4, _m, _ref, _ref1, _ref2, _ref3, _ref4;
+      data = reorgLodData(data);
+      data = chrscales(data, width, chrGap, margin.left, true);
+      xscale = data.xscale;
+      nlod = data.lodnames.length;
+      yscale.domain([-0.5, nlod - 0.5]).range([margin.top + height, margin.top]);
+      rectHeight = yscale(0) - yscale(1);
+      xLR = {};
+      _ref = data.chrnames;
+      for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+        chr = _ref[_i];
+        if (data.posByChr[chr[0]].length > 0){
+          xLR[chr[0]] = getLeftRight(data.posByChr[chr[0]]);
+        }
+      }
+      zmin = 0;
+      zmax = 0;
+      _ref1 = data.lodnames;
+      for (_j = 0, _len1 = _ref1.length; _j < _len1; _j++) {
+        lodcol = _ref1[_j];
+        extent = d3.extent(data[lodcol]);
+        if (extent[0] < zmin) {
+          zmin = extent[0];
+        }
+        if (extent[1] > zmax) {
+          zmax = extent[1];
+        }
+      }
+      if (-zmin > zmax) {
+        zmax = -zmin;
+      }
+      zlim = zlim != null ? zlim : [-zmax, 0, zmax];
+      if (zlim.length !== colors.length) {
+        console.log("zlim.length (" + zlim.length + ") != colors.length (" + colors.length + ")");
+      }
+      zscale.domain(zlim).range(colors);
+      zthresh = zthresh != null ? zthresh : zmin - 1;
+      data.cells = [];
+      _ref2 = data.chrnames;
+      for (_k = 0, _len2 = _ref2.length; _k < _len2; _k++) {
+        chr_ob = _ref2[_k];
+        chr = chr_ob[0];
+        _ref3 = data.posByChr[chr];
+        for (i = _l = 0, _len3 = _ref3.length; _l < _len3; i = ++_l) {
+          pos = _ref3[i];
+          _ref4 = data.lodByChr[chr][i];
+          for (j = _m = 0, _len4 = _ref4.length; _m < _len4; j = ++_m) {
+            lod = _ref4[j];
+            if (lod >= zthresh || lod <= -zthresh) {
+              data.cells.push({
+                z: lod,
+                left: (xscale[chr](pos) + xscale[chr](xLR[chr][pos].left)) / 2,
+                right: (xscale[chr](pos) + xscale[chr](xLR[chr][pos].right)) / 2,
+                lodindex: j,
+                chr: chr,
+                pos: pos
+              });
+            }
+          }
+        }
+      }
+      svg = d3.select(this).selectAll("svg").data([data]);
+      gEnter = svg.enter().append("svg").append("g");
+      svg.attr("width", width + margin.left + margin.right).attr("height", height + margin.top + margin.bottom);
+      g = svg.select("g");
+      g.append("g").attr("id", "boxes").selectAll("empty").data(data.chrnames).enter().append("rect").attr("id", function(d) {
+        return "box" + d[0];
+      }).attr("x", function(d, i) {
+        return data.chrStart[i];
+      }).attr("y", function(d) {
+        return margin.top;
+      }).attr("height", height).attr("width", function(d, i) {
+        return data.chrEnd[i] - data.chrStart[i];
+      }).attr("fill", rectcolor).attr("stroke", "none");
+      titlegrp = g.append("g").attr("class", "title").append("text").attr("x", margin.left + width / 2).attr("y", margin.top - titlepos).text(title);
+      xaxis = g.append("g").attr("class", "x axis");
+      xaxis.selectAll("empty").data(data.chrnames).enter().append("text").attr("x", function(d, i) {
+        return (data.chrStart[i] + data.chrEnd[i]) / 2;
+      }).attr("y", margin.top + height + axispos.xlabel).text(function(d) {
+        return d[0];
+      });
+      xaxis.append("text").attr("class", "title").attr("x", margin.left + width / 2).attr("y", margin.top + height + axispos.xtitle).text(xlab);
+      rotate_ylab = rotate_ylab != null ? rotate_ylab : ylab.length > 1;
+      yaxis = g.append("g").attr("class", "y axis");
+      yaxis.append("text").attr("class", "title").attr("y", margin.top + height / 2).attr("x", margin.left - axispos.ytitle).text(ylab).attr("transform", rotate_ylab ? "rotate(270," + (margin.left - axispos.ytitle) + "," + (margin.top + height / 2) + ")" : "");
+      yaxis.selectAll("empty").data(data.lodnames).enter().append("text").attr("id", function(d, i) {
+        return "yaxis" + i;
+      }).attr("y", function(d, i) {
+        return yscale(i);
+      }).attr("x", margin.left - axispos.ylabel).text(function(d) {
+        return d;
+      }).attr("opacity", 0);
+      celltip = d3.tip().attr('class', 'd3-tip').html(function(d) {
+        var p, z;
+        z = d3.format(".2f")(Math.abs(d.z));
+        p = d3.format(".1f")(d.pos);
+        return "" + d.chr + "@" + p + " &rarr; " + z;
+      }).direction('e').offset([0, 10]);
+      svg.call(celltip);
+      cells = g.append("g").attr("id", "cells");
+      cellSelect = cells.selectAll("empty").data(data.cells).enter().append("rect").attr("x", function(d) {
+        return d.left;
+      }).attr("y", function(d) {
+        return yscale(d.lodindex) - rectHeight / 2;
+      }).attr("width", function(d) {
+        return d.right - d.left;
+      }).attr("height", rectHeight).attr("class", function(d, i) {
+        return "cell" + i;
+      }).attr("fill", function(d) {
+        return zscale(d.z);
+      }).attr("stroke", "none").attr("stroke-width", "1").on("mouseover.paneltip", function(d) {
+        yaxis.select("text#yaxis" + d.lodindex).attr("opacity", 1);
+        d3.select(this).attr("stroke", "black");
+        return celltip.show(d, this);
+      }).on("mouseout.paneltip", function(d) {
+        yaxis.select("text#yaxis" + d.lodindex).attr("opacity", 0);
+        d3.select(this).attr("stroke", "none");
+        return celltip.hide();
+      });
+      return g.append("g").attr("id", "boxes").selectAll("empty").data(data.chrnames).enter().append("rect").attr("id", function(d) {
+        return "box" + d;
+      }).attr("x", function(d, i) {
+        return data.chrStart[i];
+      }).attr("y", function(d) {
+        return margin.top;
+      }).attr("height", height).attr("width", function(d, i) {
+        return data.chrEnd[i] - data.chrStart[i];
+      }).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+    });
+  };
+  chart.width = function(value) {
+    if (!arguments.length) {
+      return width;
+    }
+    width = value;
+    return chart;
+  };
+  chart.height = function(value) {
+    if (!arguments.length) {
+      return height;
+    }
+    height = value;
+    return chart;
+  };
+  chart.margin = function(value) {
+    if (!arguments.length) {
+      return margin;
+    }
+    margin = value;
+    return chart;
+  };
+  chart.axispos = function(value) {
+    if (!arguments.length) {
+      return axispos;
+    }
+    axispos = value;
+    return chart;
+  };
+  chart.titlepos = function(value) {
+    if (!arguments.length) {
+      return titlepos;
+    }
+    titlepos;
+    return chart;
+  };
+  chart.rectcolor = function(value) {
+    if (!arguments.length) {
+      return rectcolor;
+    }
+    rectcolor = value;
+    return chart;
+  };
+  chart.colors = function(value) {
+    if (!arguments.length) {
+      return colors;
+    }
+    colors = value;
+    return chart;
+  };
+  chart.title = function(value) {
+    if (!arguments.length) {
+      return title;
+    }
+    title = value;
+    return chart;
+  };
+  chart.xlab = function(value) {
+    if (!arguments.length) {
+      return xlab;
+    }
+    xlab = value;
+    return chart;
+  };
+  chart.ylab = function(value) {
+    if (!arguments.length) {
+      return ylab;
+    }
+    ylab = value;
+    return chart;
+  };
+  chart.rotate_ylab = function(value) {
+    if (!arguments.length) {
+      return rotate_ylab;
+    }
+    rotate_ylab = value;
+    return chart;
+  };
+  chart.zthresh = function(value) {
+    if (!arguments.length) {
+      return zthresh;
+    }
+    zthresh = value;
+    return chart;
+  };
+  chart.zlim = function(value) {
+    if (!arguments.length) {
+      return zlim;
+    }
+    zlim = value;
+    return chart;
+  };
+  chart.chrGap = function(value) {
+    if (!arguments.length) {
+      return chrGap;
+    }
+    chrGap = value;
+    return chart;
+  };
+  chart.xscale = function() {
+    return xscale;
+  };
+  chart.yscale = function() {
+    return yscale;
+  };
+  chart.zscale = function() {
+    return zscale;
+  };
+  chart.cellSelect = function() {
+    return cellSelect;
+  };
+  return chart;
+};
diff --git a/gn2/wqflask/static/new/javascript/login.js b/gn2/wqflask/static/new/javascript/login.js
new file mode 100644
index 00000000..2fe9ba3c
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/login.js
@@ -0,0 +1,41 @@
+// Generated by CoffeeScript 1.8.0
+$(function() {
+  var form_success, modalize, submit_form;
+  modalize = function(event) {
+    event.preventDefault();
+    console.log("in modal_replace:", $(this).attr("href"));
+    return $.colorbox({
+      open: true,
+      href: this.href,
+      onComplete: function() {
+        return $(".focused").focus();
+      }
+    });
+  };
+  $(document).one("click", ".modalize", modalize);
+  console.log("Modalized click!!!");
+  form_success = function(data) {
+    return $.colorbox({
+      open: true,
+      html: data,
+      onComplete: function() {
+        return $("form").on("submit", submit_form);
+      }
+    });
+  };
+  submit_form = function(event) {
+    var data, submit_to;
+    event.preventDefault();
+    submit_to = $(this).attr('action');
+    data = $(this).serialize();
+    console.log("submit_to is:", submit_to);
+    return $.ajax({
+      type: "POST",
+      url: submit_to,
+      data: data,
+      dataType: "html",
+      success: form_success
+    });
+  };
+  return $("#colorbox form").on("submit", submit_form);
+});
diff --git a/gn2/wqflask/static/new/javascript/network_graph.js b/gn2/wqflask/static/new/javascript/network_graph.js
new file mode 100644
index 00000000..480443ee
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/network_graph.js
@@ -0,0 +1,259 @@
+var default_style = [ // the stylesheet for the graph
+          {    
+            selector: 'node',
+            style: {
+              'background-color': '#666',
+              'label': 'data(label)',
+              'font-size': 10
+            }
+          },
+
+          {
+            selector: 'edge',
+            style: {
+              'width': 'data(width)',
+              'line-color': 'data(color)',
+              'target-arrow-color': '#ccc',
+              'target-arrow-shape': 'triangle',
+              'font-size': 8
+            }
+          }
+      ]
+
+var default_layout = { name: 'circle',
+                fit: true, // whether to fit the viewport to the graph
+                padding: 30 // the padding on fit
+                //idealEdgeLength: function( edge ){ return edge.data['correlation']*10; },                
+              }
+
+window.onload=function() {
+    // id of Cytoscape Web container div
+    //var div_id = "cytoscapeweb";
+
+    var cy = cytoscape({
+      container: $('#cytoscapeweb'), // container to render in
+
+      elements: elements_list,
+      
+      style: default_style,
+
+      zoom: 12,
+      layout: default_layout,
+
+      zoomingEnabled: true,
+      userZoomingEnabled: true,
+      panningEnabled: true,
+      userPanningEnabled: true,
+      boxSelectionEnabled: false,
+      selectionType: 'single',
+
+      // rendering options:
+      styleEnabled: true
+    });
+
+    var eles = cy.$() // var containing all elements, so elements can be restored after being removed
+    
+    var defaults = {
+      zoomFactor: 0.05, // zoom factor per zoom tick
+      zoomDelay: 45, // how many ms between zoom ticks
+      minZoom: 0.1, // min zoom level
+      maxZoom: 10, // max zoom level
+      fitPadding: 30, // padding when fitting
+      panSpeed: 10, // how many ms in between pan ticks
+      panDistance: 10, // max pan distance per tick
+      panDragAreaSize: 75, // the length of the pan drag box in which the vector for panning is calculated (bigger = finer control of pan speed and direction)
+      panMinPercentSpeed: 0.25, // the slowest speed we can pan by (as a percent of panSpeed)
+      panInactiveArea: 8, // radius of inactive area in pan drag box
+      panIndicatorMinOpacity: 0.5, // min opacity of pan indicator (the draggable nib); scales from this to 1.0
+      zoomOnly: false, // a minimal version of the ui only with zooming (useful on systems with bad mousewheel resolution)
+      fitSelector: undefined, // selector of elements to fit
+      animateOnFit: function(){ // whether to animate on fit
+        return false;
+      },
+      fitAnimationDuration: 1000, // duration of animation on fit
+
+      // icon class names
+      sliderHandleIcon: 'fa fa-minus',
+      zoomInIcon: 'fa fa-plus',
+      zoomOutIcon: 'fa fa-minus',
+      resetIcon: 'fa fa-expand'
+    };
+
+    cy.panzoom( defaults );
+    
+    function create_qtips(cy){
+        cy.nodes().qtip({
+                            content: function(){
+                                qtip_content = ''
+                                gn_link = '<b>'+'<a href="' + gn2_url + '/show_trait?trait_id=' + this.data().id.split(":")[0] + '&dataset=' + this.data().id.split(":")[1] + '" >'+this.data().id +'</a>'+'</b><br>'
+                                qtip_content += gn_link
+                                if (typeof(this.data().geneid) !== 'undefined'){
+                                    ncbi_link = '<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=' + this.data().geneid + '" >NCBI<a>'+'<br>'
+                                    qtip_content += ncbi_link
+                                }
+                                if (typeof(this.data().omim) !== 'undefined'){
+                                    omim_link = '<a href="http://www.ncbi.nlm.nih.gov/omim/' + this.data().omim + '" >OMIM<a>'+'<br>'
+                                    qtip_content += omim_link
+                                }
+                                return qtip_content
+                            },
+                            position: {
+                                my: 'top center',
+                                at: 'bottom center'
+                            },
+                            style: {
+                                classes: 'qtip-bootstrap',
+                                tip: {
+                                    width: 16,
+                                    height: 8
+                                }
+                            }
+                        });
+                        
+        cy.edges().qtip({
+                            content: function(){
+                                correlation_line = '<b>Sample r: ' + this.data().correlation + '</b><br>'
+                                p_value_line = 'Sample p(r): ' + this.data().p_value + '<br>'
+                                overlap_line = 'Overlap: ' + this.data().overlap + '<br>'
+                                scatter_plot = '<a href="' + gn2_url + '/corr_scatter_plot?method=pearson&dataset_1=' + this.data().source.split(":")[1] + '&dataset_2=' + this.data().target.split(":")[1] + '&trait_1=' + this.data().source.split(":")[0] + '&trait_2=' + this.data().target.split(":")[0] + '" >View Scatterplot</a>'
+                                return correlation_line + p_value_line + overlap_line + scatter_plot
+                            },
+                            position: {
+                                my: 'top center',
+                                at: 'bottom center'
+                            },
+                            style: {
+                                classes: 'qtip-bootstrap',
+                                tip: {
+                                    width: 16,
+                                    height: 8
+                                }
+                            }
+                        });    
+    }
+    
+    create_qtips(cy)
+    
+    $('#neg_slide').change(function() {
+        eles.restore()
+
+        pos_slide_val = $('#pos_slide').val();
+        cy.$("node[max_corr > " + $(this).val() + "][max_corr < " + pos_slide_val + "]").remove(); 
+        cy.$("edge[correlation > " + $(this).val() + "][correlation < " + pos_slide_val + "]").remove();
+
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+        
+    });
+    $('#pos_slide').change(function() {
+        eles.restore()
+
+        neg_slide_val = $('#neg_slide').val();
+        cy.$("node[max_corr > " + neg_slide_val +"][max_corr < " + $(this).val() + "]").remove(); 
+        cy.$("edge[correlation > " + neg_slide_val +"][correlation < " + $(this).val() + "]").remove();
+
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+        
+    });
+    
+    $('#reset_graph').click(function() {
+        eles.restore() 
+        $('#pos_slide').val(0)
+        $('#neg_slide').val(0)
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+    });
+    
+    $('select[name=focus_select]').change(function() {
+        focus_trait = $(this).val()
+
+        eles.restore()
+        cy.$('edge[source != "' + focus_trait + '"][target != "' + focus_trait + '"]').remove()
+
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+    });
+    
+    $('select[name=layout_select]').change(function() {
+        layout_type = $(this).val()
+        cy.layout({ name: layout_type,
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+    });
+    
+    $('select[name=font_size]').change(function() {
+        font_size = $(this).val()
+
+        new_style = default_style
+        new_style[0]['style']['font-size'] = parseInt(font_size)
+        cy.style().fromJson(new_style).update()
+    });
+    $('select[name=edge_width]').change(function() {
+        //eles.restore()
+
+        //ZS: This is needed, or else it alters the original object
+        orig_elements = JSON.parse(JSON.stringify(elements_list));
+
+        width_multiplier = $(this).val()
+        updated_elements = []
+        for (i=0; i < orig_elements.length; i++){
+            this_element = orig_elements[i]
+            if ('source' in this_element['data']) {
+                orig_width = this_element['data']['width']
+                this_element['data']['width'] = orig_width * width_multiplier
+            }
+            updated_elements.push(this_element)
+        }
+        cy.remove(eles)
+        cy.add(updated_elements)
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+    });
+
+    $('select[name=edge_width]').change(function() {
+        //eles.restore()
+
+        //ZS: This is needed, or else it alters the original object
+        orig_elements = JSON.parse(JSON.stringify(elements_list));
+
+        width_multiplier = $(this).val()
+        updated_elements = []
+        for (i=0; i < orig_elements.length; i++){
+            this_element = orig_elements[i]
+            if ('source' in this_element['data']) {
+                orig_width = this_element['data']['width']
+                this_element['data']['width'] = orig_width * width_multiplier
+            }
+            updated_elements.push(this_element)
+        }
+        cy.remove(eles)
+        cy.add(updated_elements)
+        cy.layout({ name: $('select[name=layout_select]').val(),
+                    fit: true, // whether to fit the viewport to the graph
+                    padding: 25 // the padding on fit              
+                  }).run();
+    });
+
+    $("a#image_link").click(function(e) {
+      var pngData = cy.png();
+
+      $(this).attr('href', pngData);
+      $(this).attr('download', 'network_graph.png');
+    });
+
+    
+};
+
+
diff --git a/gn2/wqflask/static/new/javascript/panelutil.js b/gn2/wqflask/static/new/javascript/panelutil.js
new file mode 100644
index 00000000..ea55a7cf
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/panelutil.js
@@ -0,0 +1,462 @@
+// Generated by CoffeeScript 1.8.0
+var abs, calc_crosstab, chrscales, colSums, displayError, expand2vector, forceAsArray, formatAxis, getLeftRight, log10, log2, matrixExtent, matrixMax, matrixMaxAbs, matrixMin, maxdiff, median, missing2null, pullVarAsArray, reorgLodData, rowSums, selectGroupColors, sumArray, transpose, unique;
+
+formatAxis = function(d, extra_digits) {
+  var ndig;
+  if (extra_digits == null) {
+    extra_digits = 0;
+  }
+  d = d[1] - d[0];
+  ndig = Math.floor(Math.log(d % 10) / Math.log(10));
+  if (ndig > 0) {
+    ndig = 0;
+  }
+  ndig = Math.abs(ndig) + extra_digits;
+  return d3.format("." + ndig + "f");
+};
+
+unique = function(x) {
+  var output, v, _i, _len, _results;
+  output = {};
+  for (_i = 0, _len = x.length; _i < _len; _i++) {
+    v = x[_i];
+    if (v) {
+      output[v] = v;
+    }
+  }
+  _results = [];
+  for (v in output) {
+    _results.push(output[v]);
+  }
+  return _results;
+};
+
+pullVarAsArray = function(data, variable) {
+  var i, v;
+  v = [];
+  for (i in data) {
+    v = v.concat(data[i][variable]);
+  }
+  return v;
+};
+
+reorgLodData = function(data, lodvarname) {
+  var chr, i, j, lodcolumn, lodval, marker, pos, _i, _j, _k, _len, _len1, _len2, _ref, _ref1, _ref2;
+  if (lodvarname == null) {
+    lodvarname = null;
+  }
+  data.posByChr = {};
+  data.lodByChr = {};
+  if ('additive' in data){
+    data.additiveByChr = {};
+  }
+  _ref = data.chrnames;
+  for (i = _i = 0, _len = _ref.length; _i < _len; i = ++_i) {
+    chr = _ref[i];
+    data.posByChr[chr[0]] = [];
+    data.lodByChr[chr[0]] = [];
+    if ('additive' in data){
+      data.additiveByChr[chr[0]] = [];
+    }
+    _ref1 = data.pos;
+
+    for (j = _j = 0, _len1 = _ref1.length; _j < _len1; j = ++_j) {
+      pos = _ref1[j];
+      if (data.chr[j].toString() === chr[0]) {
+        data.posByChr[chr[0]].push(pos);
+        if (!Array.isArray(data.lodnames)) {
+          data.lodnames = [data.lodnames];
+        }
+        lodval = (function() {
+          var _k, _len2, _ref2, _results;
+          _ref2 = data.lodnames;
+          _results = [];
+          for (_k = 0, _len2 = _ref2.length; _k < _len2; _k++) {
+            lodcolumn = _ref2[_k];
+            _results.push(data[lodcolumn][j]);
+          }
+          return _results;
+        })();
+        data.lodByChr[chr[0]].push(lodval);
+
+        if ('additive' in data){
+          addval = data['additive'][j]
+          data.additiveByChr[chr[0]].push(addval);
+        }
+
+      }
+    }
+  }
+  if (lodvarname != null) {
+    data.markers = [];
+    _ref2 = data.markernames;
+    for (i = _k = 0, _len2 = _ref2.length; _k < _len2; i = ++_k) {
+      marker = _ref2[i];
+      if (marker !== "") {
+        data.markers.push({
+          name: marker,
+          chr: data.chr[i],
+          pos: data.pos[i],
+          lod: data[lodvarname][i]
+        });
+      }
+    }
+  }
+  return data;
+};
+
+chrscales = function(data, width, chrGap, leftMargin, pad4heatmap, mappingScale) {
+  var L, chr, chrEnd, chrLength, chrStart, cur, d, i, maxd, rng, totalChrLength, w, _i, _j, _len, _len1, _ref, _ref1;
+  chrStart = [];
+  chrEnd = [];
+  chrLength = [];
+  totalChrLength = 0;
+  maxd = 0;
+  _ref = data.chrnames;
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    chr = _ref[_i];
+    d = maxdiff(data.posByChr[chr[0]]);
+    if (d > maxd) {
+      maxd = d;
+    }
+    //rng = d3.extent(data.posByChr[chr[0]]);
+    //chrStart.push(rng[0]);
+    //chrEnd.push(rng[1]);
+    //L = rng[1] - rng[0];
+    chrStart.push(0);
+    chrEnd.push(chr[1]);
+    L = chr[1]
+    chrLength.push(L);
+    totalChrLength += L;
+  }
+  if (pad4heatmap) {
+    data.recwidth = maxd;
+    chrStart = chrStart.map(function(x) {
+      return x - maxd / 2;
+    });
+    chrEnd = chrEnd.map(function(x) {
+      return x + maxd / 2;
+    });
+    chrLength = chrLength.map(function(x) {
+      return x + maxd;
+    });
+    totalChrLength += chrLength.length * maxd;
+  }
+  data.chrStart = [];
+  data.chrEnd = [];
+  cur = leftMargin;
+  if (!pad4heatmap) {
+    cur += chrGap / 2;
+  }
+  data.xscale = {};
+  _ref1 = data.chrnames;
+  for (i = _j = 0, _len1 = _ref1.length; _j < _len1; i = ++_j) {
+    chr = _ref1[i];
+    data.chrStart.push(cur);
+    w = Math.round((width - chrGap * (data.chrnames.length - pad4heatmap)) / totalChrLength * chrLength[i]);
+    data.chrEnd.push(cur + w);
+    cur = data.chrEnd[i] + chrGap;
+
+    if (mappingScale == "morgan") {
+        max_pos = d3.max(data.posByChr[chr[0]])
+        data.xscale[chr[0]] = d3.scale.linear().domain([chrStart[i], max_pos]).range([data.chrStart[i], data.chrEnd[i]]);
+    }
+    else {
+        data.xscale[chr[0]] = d3.scale.linear().domain([chrStart[i], chrEnd[i]]).range([data.chrStart[i], data.chrEnd[i]]);
+    }
+  }
+  return data;
+};
+
+selectGroupColors = function(ngroup, palette) {
+  if (ngroup === 0) {
+    return [];
+  }
+  if (palette === "dark") {
+    if (ngroup === 1) {
+      return ["slateblue"];
+    }
+    if (ngroup === 2) {
+      return ["MediumVioletRed", "slateblue"];
+    }
+    if (ngroup <= 9) {
+      return colorbrewer.Set1[ngroup];
+    }
+    return d3.scale.category20().range().slice(0, ngroup);
+  } else {
+    if (ngroup === 1) {
+      return ["#bebebe"];
+    }
+    if (ngroup === 2) {
+      return ["lightpink", "lightblue"];
+    }
+    if (ngroup <= 9) {
+      return colorbrewer.Pastel1[ngroup];
+    }
+    return ["#8fc7f4", "#fed7f8", "#ffbf8e", "#fffbb8", "#8ce08c", "#d8ffca", "#f68788", "#ffd8d6", "#d4a7fd", "#f5f0f5", "#cc968b", "#f4dcd4", "#f3b7f2", "#f7f6f2", "#bfbfbf", "#f7f7f7", "#fcfd82", "#fbfbcd", "#87feff", "#defaf5"].slice(0, ngroup);
+  }
+};
+
+expand2vector = function(input, n) {
+  var i;
+  if (input == null) {
+    return input;
+  }
+  if (Array.isArray(input) && input.length >= n) {
+    return input;
+  }
+  if (!Array.isArray(input)) {
+    input = [input];
+  }
+  if (input.length === 1 && n > 1) {
+    input = (function() {
+      var _results;
+      _results = [];
+      for (i in d3.range(n)) {
+        _results.push(input[0]);
+      }
+      return _results;
+    })();
+  }
+  return input;
+};
+
+median = function(x) {
+  var n;
+  if (x == null) {
+    return null;
+  }
+  n = x.length;
+  x.sort(function(a, b) {
+    return a - b;
+  });
+  if (n % 2 === 1) {
+    return x[(n - 1) / 2];
+  }
+  return (x[n / 2] + x[(n / 2) - 1]) / 2;
+};
+
+getLeftRight = function(x) {
+  var i, n, result, v, xdif, _i, _j, _k, _len, _ref;
+  n = x.length;
+  x.sort(function(a, b) {
+    return a - b;
+  });
+  xdif = [];
+  result = {};
+  for (_i = 0, _len = x.length; _i < _len; _i++) {
+    v = x[_i];
+    result[v] = {};
+  }
+  for (i = _j = 1; 1 <= n ? _j < n : _j > n; i = 1 <= n ? ++_j : --_j) {
+    xdif.push(x[i] - x[i - 1]);
+    result[x[i]].left = x[i - 1];
+  }
+  for (i = _k = 0, _ref = n - 1; 0 <= _ref ? _k < _ref : _k > _ref; i = 0 <= _ref ? ++_k : --_k) {
+    result[x[i]].right = x[i + 1];
+  }
+  xdif = median(xdif);
+  result.mediandiff = xdif;
+  result[x[0]].left = x[0] - xdif;
+  result[x[n - 1]].right = x[n - 1] + xdif;
+  result.extent = [x[0] - xdif / 2, x[n - 1] + xdif / 2];
+  return result;
+};
+
+maxdiff = function(x) {
+  var d, i, result, _i, _ref;
+  if (x.length < 2) {
+    return null;
+  }
+  result = x[1] - x[0];
+  if (x.length < 3) {
+    return result;
+  }
+  for (i = _i = 2, _ref = x.length; 2 <= _ref ? _i < _ref : _i > _ref; i = 2 <= _ref ? ++_i : --_i) {
+    d = x[i] - x[i - 1];
+    if (d > result) {
+      result = d;
+    }
+  }
+  return result;
+};
+
+matrixMin = function(mat) {
+  var i, j, result;
+  result = mat[0][0];
+  for (i in mat) {
+    for (j in mat[i]) {
+      if (result > mat[i][j]) {
+        result = mat[i][j];
+      }
+    }
+  }
+  return result;
+};
+
+matrixMax = function(mat) {
+  var i, j, result;
+  result = mat[0][0];
+  for (i in mat) {
+    for (j in mat[i]) {
+      if (result < mat[i][j]) {
+        result = mat[i][j];
+      }
+    }
+  }
+  return result;
+};
+
+matrixMaxAbs = function(mat) {
+  var i, j, result;
+  result = Math.abs(mat[0][0]);
+  for (i in mat) {
+    for (j in mat[i]) {
+      if (result < mat[i][j]) {
+        result = Math.abs(mat[i][j]);
+      }
+    }
+  }
+  return result;
+};
+
+matrixExtent = function(mat) {
+  return [matrixMin(mat), matrixMax(mat)];
+};
+
+d3.selection.prototype.moveToFront = function() {
+  return this.each(function() {
+    return this.parentNode.appendChild(this);
+  });
+};
+
+d3.selection.prototype.moveToBack = function() {
+  return this.each(function() {
+    var firstChild;
+    firstChild = this.parentNode.firstchild;
+    if (firstChild) {
+      return this.parentNode.insertBefore(this, firstChild);
+    }
+  });
+};
+
+forceAsArray = function(x) {
+  if (x == null) {
+    return x;
+  }
+  if (Array.isArray(x)) {
+    return x;
+  }
+  return [x];
+};
+
+missing2null = function(vec, missingvalues) {
+  if (missingvalues == null) {
+    missingvalues = ['NA', ''];
+  }
+  return vec.map(function(value) {
+    if (missingvalues.indexOf(value) > -1) {
+      return null;
+    } else {
+      return value;
+    }
+  });
+};
+
+displayError = function(message) {
+  if (d3.select("div.error").empty()) {
+    d3.select("body").insert("div", ":first-child").attr("class", "error");
+  }
+  return d3.select("div.error").append("p").text(message);
+};
+
+sumArray = function(vec) {
+  return vec.reduce(function(a, b) {
+    return a + b;
+  });
+};
+
+calc_crosstab = function(data) {
+  var col, cs, i, ncol, nrow, result, row, rs, _i, _j;
+  nrow = data.ycat.length;
+  ncol = data.xcat.length;
+  result = (function() {
+    var _i, _results;
+    _results = [];
+    for (row = _i = 0; 0 <= nrow ? _i <= nrow : _i >= nrow; row = 0 <= nrow ? ++_i : --_i) {
+      _results.push((function() {
+        var _j, _results1;
+        _results1 = [];
+        for (col = _j = 0; 0 <= ncol ? _j <= ncol : _j >= ncol; col = 0 <= ncol ? ++_j : --_j) {
+          _results1.push(0);
+        }
+        return _results1;
+      })());
+    }
+    return _results;
+  })();
+  for (i in data.x) {
+    result[data.y[i]][data.x[i]] += 1;
+  }
+  rs = rowSums(result);
+  cs = colSums(result);
+  for (i = _i = 0; 0 <= ncol ? _i < ncol : _i > ncol; i = 0 <= ncol ? ++_i : --_i) {
+    result[nrow][i] = cs[i];
+  }
+  for (i = _j = 0; 0 <= nrow ? _j < nrow : _j > nrow; i = 0 <= nrow ? ++_j : --_j) {
+    result[i][ncol] = rs[i];
+  }
+  result[nrow][ncol] = sumArray(rs);
+  return result;
+};
+
+rowSums = function(mat) {
+  var x, _i, _len, _results;
+  _results = [];
+  for (_i = 0, _len = mat.length; _i < _len; _i++) {
+    x = mat[_i];
+    _results.push(sumArray(x));
+  }
+  return _results;
+};
+
+transpose = function(mat) {
+  var i, j, _i, _ref, _results;
+  _results = [];
+  for (j = _i = 0, _ref = mat[0].length; 0 <= _ref ? _i < _ref : _i > _ref; j = 0 <= _ref ? ++_i : --_i) {
+    _results.push((function() {
+      var _j, _ref1, _results1;
+      _results1 = [];
+      for (i = _j = 0, _ref1 = mat.length; 0 <= _ref1 ? _j < _ref1 : _j > _ref1; i = 0 <= _ref1 ? ++_j : --_j) {
+        _results1.push(mat[i][j]);
+      }
+      return _results1;
+    })());
+  }
+  return _results;
+};
+
+colSums = function(mat) {
+  return rowSums(transpose(mat));
+};
+
+log2 = function(x) {
+  if (x == null) {
+    return x;
+  }
+  return Math.log(x) / Math.log(2.0);
+};
+
+log10 = function(x) {
+  if (x == null) {
+    return x;
+  }
+  return Math.log(x) / Math.log(10.0);
+};
+
+abs = function(x) {
+  if (x == null) {
+    return x;
+  }
+  return Math.abs(x);
+};
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/partial_correlations.js b/gn2/wqflask/static/new/javascript/partial_correlations.js
new file mode 100644
index 00000000..5de1204c
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/partial_correlations.js
@@ -0,0 +1,26 @@
+function selected_traits() {
+    traits = $("#trait_table input:checked").map(function() {
+      return $(this).attr("data-trait-info");
+    }).get();
+    if (traits.length == 0){
+      num_traits = $("#trait_table input").length
+      if (num_traits <= 100){
+        traits = $("#trait_table input").map(function() {
+          return $(this).attr("data-trait-info");
+        }).get();
+      }
+    }
+    return traits
+}
+
+$("#partial-correlations").on("click", function() {
+    // Submit the form to the `partial_correlations` endpoint
+    url = $(this).data("url")
+    traits = selected_traits();
+    $("#trait_list").val(traits.reduce(function(acc, str) {
+	return acc.concat(";;;".concat(str));
+    }));
+    $("input[name=tool_used]").val("Partial Correlation")
+    $("input[name=form_url]").val(url)
+    return submit_special(url)
+})
diff --git a/gn2/wqflask/static/new/javascript/password_strength.js b/gn2/wqflask/static/new/javascript/password_strength.js
new file mode 100644
index 00000000..a8a45f7d
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/password_strength.js
@@ -0,0 +1,57 @@
+// Generated by CoffeeScript 1.8.0
+
+$(function() {
+  var word_score;
+  $("#password").keyup(function() {
+    var crack_time, display, passtext, result, word;
+    passtext = $(this).val();
+    result = zxcvbn(passtext);
+    if (passtext.length < 6) {
+      let error_message = `<strong style="color:red;">the password must have a length greater than six characters</strong>`
+      $("#password_strength").html(error_message);
+      return $("#password_alert").fadeIn();
+    } else {
+      word = word_score(result.score);
+      crack_time = result.crack_times_display.online_throttling_100_per_hour;
+      if (crack_time === "instant") {
+        crack_time = "a second";
+      }
+      display = `This is ${word} password.`
+      $("#password_strength").html(display);
+      return $("#password_alert").fadeIn();
+    }
+  });
+  return word_score = function(num_score) {
+    num_score = parseInt(num_score);
+    console.log("num_score is:", num_score);
+
+    let passwordFeedback = {
+      0:{
+        color:"#cc1818",
+        feedback:"a weak"
+      },
+
+      1:{
+        color:"#cc1818",
+        feedback:"a bad"
+      },
+
+      2:{
+        color:"#f59105",
+        feedback:"a mediocre"
+      },
+
+      3:{
+        color:"#44ba34",
+        feedback:"a strong"
+      },
+      4:{
+        color:"green",
+        feedback:"a stronger"
+      }
+    }
+
+    let mappingResult = `<strong style="color:${passwordFeedback[num_score].color};">${passwordFeedback[num_score].feedback}</strong>`
+    return mappingResult;
+  };
+});
diff --git a/gn2/wqflask/static/new/javascript/plotly_probability_plot.js b/gn2/wqflask/static/new/javascript/plotly_probability_plot.js
new file mode 100644
index 00000000..bc1e021b
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/plotly_probability_plot.js
@@ -0,0 +1,308 @@
+// Generated by CoffeeScript 1.9.2
+(function() {
+  var get_z_scores, redraw_prob_plot, root;
+
+  root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+  get_z_scores = function(n) {
+    var i, j, osm_uniform, ref, x;
+    osm_uniform = new Array(n);
+    osm_uniform[n - 1] = Math.pow(0.5, 1.0 / n);
+    osm_uniform[0] = 1 - osm_uniform[n - 1];
+    for (i = j = 1, ref = n - 2; 1 <= ref ? j <= ref : j >= ref; i = 1 <= ref ? ++j : --j) {
+      osm_uniform[i] = (i + 1 - 0.3175) / (n + 0.365);
+    }
+    return (function() {
+      var k, len, results;
+      results = [];
+      for (k = 0, len = osm_uniform.length; k < len; k++) {
+        x = osm_uniform[k];
+        results.push(jStat.normal.inv(x, 0, 1));
+      }
+      return results;
+    })();
+  };
+
+  redraw_prob_plot = function(samples, sample_group) {
+    var container, h, margin, totalh, totalw, w;
+    h = 550;
+    w = 600;
+    margin = {
+      left: 60,
+      top: 40,
+      right: 40,
+      bottom: 40,
+      inner: 5
+    };
+    totalh = h + margin.top + margin.bottom;
+    totalw = w + margin.left + margin.right;
+    container = $("#prob_plot_container");
+    container.width(totalw);
+    container.height(totalh);
+    var W, all_samples, chart, data, intercept, make_data, names, pvalue, pvalue_str, slope, sorted_names, sorted_values, sw_result, test_str, x, z_scores;
+    all_samples = samples[sample_group];
+    names = (function() {
+      var j, len, ref, results;
+      ref = _.keys(all_samples);
+      results = [];
+      for (j = 0, len = ref.length; j < len; j++) {
+        x = ref[j];
+        if (all_samples[x] !== null) {
+          results.push(x);
+        }
+      }
+      return results;
+    })();
+    sorted_names = names.sort(function(x, y) {
+      return all_samples[x].value - all_samples[y].value;
+    });
+    max_decimals = 0
+    sorted_values = (function() {
+      var j, len, results;
+      results = [];
+      for (j = 0, len = sorted_names.length; j < len; j++) {
+        x = sorted_names[j];
+        results.push(all_samples[x].value);
+        if (all_samples[x].value.countDecimals() > max_decimals) {
+            max_decimals = all_samples[x].value.countDecimals()-1
+        }
+      }
+      return results;
+    })();
+    //ZS: 0.1 indicates buffer, increase to increase buffer
+    y_domain = [sorted_values[0] - (sorted_values.slice(-1)[0] - sorted_values[0])*0.1, sorted_values.slice(-1)[0] + (sorted_values.slice(-1)[0] - sorted_values[0])*0.1]
+    //sw_result = ShapiroWilkW(sorted_values);
+    //W = sw_result.w.toFixed(3);
+    //pvalue = sw_result.p.toFixed(3);
+    //pvalue_str = pvalue > 0.05 ? pvalue.toString() : "<span style='color:red'>" + pvalue + "</span>";
+    //test_str = "Shapiro-Wilk test statistic is " + W + " (p = " + pvalue_str + ")";
+    z_scores = get_z_scores(sorted_values.length);
+    //ZS: 0.1 indicates buffer, increase to increase buffer
+    x_domain = [z_scores[0] - (z_scores.slice(-1)[0] - z_scores[0])*0.1, z_scores.slice(-1)[0] + (z_scores.slice(-1)[0] - z_scores[0])*0.1]
+    slope = jStat.stdev(sorted_values);
+    intercept = jStat.mean(sorted_values);
+    make_data = function(group_name) {
+      var sample, value, z_score;
+      return {
+        key: js_data.sample_group_types[group_name],
+        slope: slope,
+        intercept: intercept,
+        values: (function() {
+          var j, len, ref, ref1, results;
+          ref = _.zip(get_z_scores(sorted_values.length), sorted_values, sorted_names);
+          results = [];
+          for (j = 0, len = ref.length; j < len; j++) {
+            ref1 = ref[j], z_score = ref1[0], value = ref1[1], sample = ref1[2];
+            if (sample in samples[group_name]) {
+              results.push({
+                x: z_score,
+                y: value,
+                name: sample
+              });
+            }
+          }
+          return results;
+        })()
+      };
+    };
+    data = [make_data('samples_primary'), make_data('samples_other'), make_data('samples_all')];
+    x_values = {}
+    y_values = {}
+    point_names = {}
+    for (i = 0; i < 3; i++){
+      these_x_values = []
+      these_y_values = []
+      these_names = []
+      for (j = 0; j < data[i].values.length; j++){
+        these_x_values.push(data[i].values[j].x)
+        these_y_values.push(data[i].values[j].y)
+        these_names.push(data[i].values[j].name)
+      }
+      if (i == 0){
+        x_values['samples_primary'] = these_x_values
+        y_values['samples_primary'] = these_y_values
+        point_names['samples_primary'] = these_names
+      } else if (i == 1) {
+        x_values['samples_other'] = these_x_values
+        y_values['samples_other'] = these_y_values
+        point_names['samples_other'] = these_names
+      } else {
+        x_values['samples_all'] = these_x_values
+        y_values['samples_all'] = these_y_values
+        point_names['samples_all'] = these_names
+      }
+    }
+
+    intercept_line = {}
+
+    if (sample_group == "samples_primary"){
+        first_x = Math.floor(x_values['samples_primary'][0])
+        first_x = first_x - first_x*0.1
+        last_x = Math.ceil(x_values['samples_primary'][x_values['samples_primary'].length - 1])
+        last_x = last_x + last_x*0.1
+        first_value = data[0].intercept + data[0].slope * first_x
+        last_value = data[0].intercept + data[0].slope * last_x
+        intercept_line['samples_primary'] = [[first_x, last_x], [first_value, last_value]]
+    } else if (sample_group == "samples_other") {
+        first_x = Math.floor(x_values['samples_other'][0])
+        first_x = first_x - first_x*0.1
+        last_x = Math.ceil(x_values['samples_other'][x_values['samples_other'].length - 1])
+        last_x = last_x + last_x*0.1
+        first_value = data[1].intercept + data[1].slope * first_x
+        last_value = data[1].intercept + data[1].slope * last_x
+        intercept_line['samples_other'] = [[first_x, last_x], [first_value, last_value]]
+    } else {
+        first_x = Math.floor(x_values['samples_all'][0])
+        first_x = first_x - first_x*0.1
+        last_x = Math.ceil(x_values['samples_all'][x_values['samples_all'].length - 1])
+        first_value = data[2].intercept + data[2].slope * first_x
+        last_x = last_x + last_x*0.1
+        last_value = data[2].intercept + data[2].slope * last_x
+        intercept_line['samples_all'] = [[first_x, last_x], [first_value, last_value]]
+    }
+
+    val_range = Math.max(...y_values['samples_all']) - Math.min(...y_values['samples_all'])
+    if (val_range < 4){
+      tick_digits = '.1f'
+    } else if (val_range < 0.4) {
+      tick_digits = '.2f'
+    } else {
+      tick_digits = 'f'
+    }
+
+    var layout = {
+        title: {
+            x: 0,
+            y: 10,
+            xanchor: 'left',
+            text: "<b>Trait " + js_data.trait_id + ": " + js_data.short_description + "</b>",
+        },
+        margin: {
+            l: 100,
+            r: 30,
+            t: 100,
+            b: 60
+        },
+        legend: {
+          x: 0.05,
+          y: 0.9,
+          xanchor: 'left'
+        },
+        xaxis: {
+            title: "<b>normal quantiles</b>",
+            range: [first_x, last_x],
+            zeroline: false,
+            visible: true,
+            linecolor: 'black',
+            linewidth: 1,
+            titlefont: {
+              family: "arial",
+              size: 16
+            },
+            ticklen: 4,
+            tickfont: {
+              size: 16
+            }
+        },
+        yaxis: {
+            zeroline: false,
+            visible: true,
+            linecolor: 'black',
+            linewidth: 1,
+            title: "<b>" + js_data.unit_type + "</b>",
+            titlefont: {
+              family: "arial",
+              size: 16
+            },
+            ticklen: 4,
+            tickfont: {
+              size: 16
+            },
+            tickformat: tick_digits,
+            automargin: true
+        },
+        width: 600,
+        height: 600,
+        hovermode: "closest",
+        dragmode: false
+    }
+
+    var primary_trace = {
+        x: x_values['samples_primary'],
+        y: y_values['samples_primary'],
+        mode: 'markers',
+        type: 'scatter',
+        name: 'Samples',
+        text: point_names['samples_primary'],
+        marker: {
+          color: 'blue',
+          width: 6
+        }
+    }
+    if ("samples_other" in js_data.sample_group_types) {
+        var other_trace = {
+            x: x_values['samples_other'],
+            y: y_values['samples_other'],
+            mode: 'markers',
+            type: 'scatter',
+            name: js_data.sample_group_types['samples_other'],
+            text: point_names['samples_other'],
+            marker: {
+              color: 'blue',
+              width: 6
+            }
+        }
+    }
+
+    if (sample_group == "samples_primary"){
+        var primary_intercept_trace = {
+            x: intercept_line['samples_primary'][0],
+            y: intercept_line['samples_primary'][1],
+            mode: 'lines',
+            type: 'scatter',
+            name: 'Normal Function',
+            line: {
+              color: 'black',
+              width: 1
+            }
+        }
+    } else if (sample_group == "samples_other"){
+        var other_intercept_trace = {
+            x: intercept_line['samples_other'][0],
+            y: intercept_line['samples_other'][1],
+            mode: 'lines',
+            type: 'scatter',
+            name: 'Normal Function',
+            line: {
+              color: 'black',
+              width: 1
+            }
+        }
+    } else {
+        var all_intercept_trace = {
+            x: intercept_line['samples_all'][0],
+            y: intercept_line['samples_all'][1],
+            mode: 'lines',
+            type: 'scatter',
+            name: 'Normal Function',
+            line: {
+              color: 'black',
+              width: 1
+            }
+        }
+    }
+
+    if (sample_group == "samples_primary"){
+        var data = [primary_intercept_trace, primary_trace]
+    } else if (sample_group == "samples_other"){
+        var data = [other_intercept_trace, other_trace]
+    } else {
+        var data = [all_intercept_trace, primary_trace, other_trace]
+    }
+
+    Plotly.newPlot('prob_plot_div', data, layout, root.modebar_options)
+  };
+
+  root.redraw_prob_plot_impl = redraw_prob_plot;
+
+}).call(this);
diff --git a/gn2/wqflask/static/new/javascript/scatter-matrix.js b/gn2/wqflask/static/new/javascript/scatter-matrix.js
new file mode 100644
index 00000000..31cb384b
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/scatter-matrix.js
@@ -0,0 +1,551 @@
+// Heavily influenced by Mike Bostock's Scatter Matrix example
+// http://mbostock.github.io/d3/talk/20111116/iris-splom.html
+//
+
+/*
+ScatterMatrix = function(url) {
+  this.__url = url;
+  this.__data = undefined;
+  this.__cell_size = 140;
+};
+*/
+
+ScatterMatrix = function(csv_string) {
+  this.__csv_string = csv_string;
+  this.__data = undefined;
+  this.__cell_size = 140;
+};
+
+ScatterMatrix.prototype.cellSize = function(n) {
+  this.__cell_size = n;
+  return this;
+};
+
+/*
+ScatterMatrix.prototype.onData = function(cb) {
+  if (this.__data) { cb(); return; }
+  var self = this;
+  d3.csv(self.__url, function(data) {
+    self.__data = data;
+    cb();
+  });
+};
+*/
+
+ScatterMatrix.prototype.onData = function(cb) {
+  if (this.__data) { cb(); return; }
+  var self = this;
+  console.log("self.csv_string:", self.__csv_string)
+
+  data = d3.csv.parse(self.__csv_string);
+  self.__data = data;
+  cb();
+
+/*
+  d3.csv.parseRows(self.__csv_string, function(data) {
+    self.__data = data;
+    cb();
+  });
+*/
+
+};
+
+ScatterMatrix.prototype.render = function () {
+  var self = this;
+
+  var container = d3.select('#scatterplot_container').append('div')
+                                   .attr('class', 'scatter-matrix-container');
+  var control = container.append('div')
+                         .attr('class', 'scatter-matrix-control')
+                         .style({'float':'left', 'margin-right':'50px'})
+  var svg = container.append('div')
+                     .attr('class', 'scatter-matrix-svg')
+                     .style({'float':'left'})
+                     .html('<em>Loading data...</em>');
+
+  this.onData(function() {
+    var data = self.__data;
+
+    // Fetch data and get all string variables
+    var string_variables = [undefined];
+    var numeric_variables = [];
+    var numeric_variable_values = {};
+
+    for (k in data[0]) {
+      if (isNaN(+data[0][k])) { string_variables.push(k); }
+      else { numeric_variables.push(k); numeric_variable_values[k] = []; }
+    }
+
+    console.log("data:", data)
+
+    data.forEach(function(d) {
+      for (var j in numeric_variables) {
+        var k = numeric_variables[j];
+        var value = d[k];
+        if (numeric_variable_values[k].indexOf(value) < 0) {
+          numeric_variable_values[k].push(value);
+        }
+      }
+    });
+
+    var size_control = control.append('div').attr('class', 'scatter-matrix-size-control');
+    var color_control = control.append('div').attr('class', 'scatter-matrix-color-control');
+    var filter_control = control.append('div').attr('class', 'scatter-matrix-filter-control');
+    var variable_control = control.append('div').attr('class', 'scatter-matrix-variable-control');
+    var drill_control = control.append('div').attr('class', 'scatter-matrix-drill-control');
+
+    // shared control states
+    var to_include = [];
+    var color_variable = undefined;
+    var selected_colors = undefined;
+    for (var j in numeric_variables) {
+      var v = numeric_variables[j];
+      to_include.push(v);
+    }
+    var drill_variables = [];
+
+    function set_filter(variable) {
+      filter_control.selectAll('*').remove();
+      if (variable) {
+        // Get unique values for this variable
+        var values = [];
+        data.forEach(function(d) {
+          var v = d[variable];
+          if (values.indexOf(v) < 0) { values.push(v); }
+        });
+
+        selected_colors = [];
+        for (var j in values) {
+          var v = values[j];
+          selected_colors.push(v);
+        }
+
+        var filter_li =
+          filter_control
+            .append('p').text('Filter by '+variable+': ')
+            .append('ul')
+            .selectAll('li')
+            .data(values)
+            .enter().append('li');
+
+        filter_li.append('input')
+                   .attr('type', 'checkbox')
+                   .attr('checked', 'checked')
+                   .on('click', function(d, i) {
+                     var new_selected_colors = [];
+                     for (var j in selected_colors) {
+                       var v = selected_colors[j];
+                       if (v !== d || this.checked) { new_selected_colors.push(v); }
+                     }
+                     if (this.checked) { new_selected_colors.push(d); }
+                     selected_colors = new_selected_colors;
+                     self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+                   });
+        filter_li.append('label')
+                   .html(function(d) { return d; });
+      }
+    }
+
+    size_a = size_control.append('p').text('Change cell size: ');
+    size_a.append('a')
+          .attr('href', '#')
+          .html('-')
+          .on('click', function() {
+            self.__cell_size *= 0.75;
+            self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+          });
+    size_a.append('span').html('&nbsp;');
+    size_a.append('a')
+          .attr('href', '#')
+          .html('+')
+          .on('click', function() {
+            self.__cell_size *= 1.25;
+            self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+          });
+
+    color_control.append('p').text('Select a variable to color:')
+    color_control
+      .append('ul')
+      .selectAll('li')
+      .data(string_variables)
+      .enter().append('li')
+        .append('a')
+          .attr('href', '#')
+          .text(function(d) { return d ? d : 'None'; })
+          .on('click', function(d, i) {
+            color_variable = d;
+            selected_colors = undefined;
+            self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+            set_filter(d);
+          });
+
+    var variable_li =
+      variable_control
+        .append('p').text('Include variables: ')
+        .append('ul')
+        .selectAll('li')
+        .data(numeric_variables)
+        .enter().append('li');
+
+    variable_li.append('input')
+               .attr('type', 'checkbox')
+               .attr('checked', 'checked')
+               .on('click', function(d, i) {
+                 var new_to_include = [];
+                 for (var j in to_include) {
+                   var v = to_include[j];
+                   if (v !== d || this.checked) { new_to_include.push(v); }
+                 }
+                 if (this.checked) { new_to_include.push(d); }
+                 to_include = new_to_include;
+                 self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+               });
+    variable_li.append('label')
+               .html(function(d) { return d; });
+
+    drill_li =
+      drill_control
+        .append('p').text('Drill and Expand: ')
+        .append('ul')
+        .selectAll('li')
+        .data(numeric_variables)
+        .enter().append('li');
+
+    drill_li.append('input')
+            .attr('type', 'checkbox')
+            .on('click', function(d, i) {
+               var new_drill_variables = [];
+               for (var j in drill_variables) {
+                 var v = drill_variables[j];
+                 if (v !== d || this.checked) { new_drill_variables.push(v); }
+               }
+               if (this.checked) { new_drill_variables.push(d); }
+               drill_variables = new_drill_variables;
+               self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+             });
+    drill_li.append('label')
+            .html(function(d) { return d+' ('+numeric_variable_values[d].length+')'; });
+
+    self.__draw(self.__cell_size, svg, color_variable, selected_colors, to_include, drill_variables);
+  });
+};
+
+ScatterMatrix.prototype.__draw =
+  function(cell_size, container_el, color_variable, selected_colors, to_include, drill_variables) {
+  var self = this;
+  this.onData(function() {
+    var data = self.__data;
+
+    if (color_variable && selected_colors) {
+      data = [];
+      self.__data.forEach(function(d) {
+        if (selected_colors.indexOf(d[color_variable]) >= 0) { data.push(d); }
+      });
+    }
+
+    container_el.selectAll('*').remove();
+
+    // If no data, don't do anything
+    if (data.length == 0) { return; }
+
+    // Parse headers from first row of data
+    var numeric_variables = [];
+    for (k in data[0]) {
+      if (!isNaN(+data[0][k]) && to_include.indexOf(k) >= 0) { numeric_variables.push(k); }
+    }
+    numeric_variables.sort();
+
+    // Get values of the string variable
+    var colors = [];
+    if (color_variable) {
+      // Using self.__data, instead of data, so our css classes are consistent when
+      // we filter by value.
+      self.__data.forEach(function(d) {
+        var s = d[color_variable];
+        if (colors.indexOf(s) < 0) { colors.push(s); }
+      });
+    }
+
+    function color_class(d) {
+      var c = d;
+      if (color_variable && d[color_variable]) { c = d[color_variable]; }
+      return colors.length > 0 ? 'color-'+colors.indexOf(c) : 'color-2';
+    }
+
+    // Size parameters
+    var size = cell_size, padding = 10,
+        axis_width = 20, axis_height = 15, legend_width = 200, label_height = 15;
+
+    // Get x and y scales for each numeric variable
+    var x = {}, y = {};
+    numeric_variables.forEach(function(trait) {
+      // Coerce values to numbers.
+      data.forEach(function(d) { d[trait] = +d[trait]; });
+
+      var value = function(d) { return d[trait]; },
+          domain = [d3.min(data, value), d3.max(data, value)],
+          range_x = [padding / 2, size - padding / 2],
+          range_y = [padding / 2, size - padding / 2];
+
+      x[trait] = d3.scale.linear().domain(domain).range(range_x);
+      y[trait] = d3.scale.linear().domain(domain).range(range_y.reverse());
+    });
+
+    // When drilling, user select one or more variables. The first drilled
+    // variable becomes the x-axis variable for all columns, and each column
+    // contains only data points that match specific values for each of the
+    // drilled variables other than the first.
+
+    var drill_values = [];
+    var drill_degrees = []
+    drill_variables.forEach(function(variable) {
+      // Skip first one, since that's just the x axis
+      if (drill_values.length == 0) {
+        drill_values.push([]);
+        drill_degrees.push(1);
+      }
+      else {
+        var values = [];
+        data.forEach(function(d) {
+          var v = d[variable];
+          if (v !== undefined && values.indexOf(v) < 0) { values.push(v); }
+        });
+        values.sort();
+        drill_values.push(values);
+        drill_degrees.push(values.length);
+      }
+    });
+    var total_columns = 1;
+    drill_degrees.forEach(function(d) { total_columns *= d; });
+
+    // Pick out stuff to draw on horizontal and vertical dimensions
+
+    if (drill_variables.length > 0) {
+      // First drill is now the x-axis variable for all columns
+      x_variables = [];
+      for (var i=0; i<total_columns; i++) {
+        x_variables.push(drill_variables[0]);
+      }
+    }
+    else {
+      x_variables = numeric_variables.slice(0);
+    }
+
+    if (drill_variables.length > 0) {
+      // Don't draw any of the "drilled" variables in vertical dimension
+      y_variables = [];
+      numeric_variables.forEach(function(variable) {
+        if (drill_variables.indexOf(variable) < 0) { y_variables.push(variable); }
+      });
+    }
+    else {
+      y_variables = numeric_variables.slice(0);
+    }
+
+    var filter_descriptions = 0;
+    if (drill_variables.length > 1) {
+      filter_descriptions = drill_variables.length-1;
+    }
+
+    // Axes
+    var x_axis = d3.svg.axis();
+    var y_axis = d3.svg.axis();
+    var intf = d3.format('d');
+    var fltf = d3.format('.f');
+    var scif = d3.format('e');
+
+    x_axis.ticks(5)
+          .tickSize(size * y_variables.length)
+          .tickFormat(function(d) {
+            if (Math.abs(+d) > 10000 || (Math.abs(d) < 0.001 && Math.abs(d) != 0)) { return scif(d); }
+            if (parseInt(d) == +d) { return intf(d); }
+            return fltf(d);
+          });
+
+    y_axis.ticks(5)
+          .tickSize(size * x_variables.length)
+          .tickFormat(function(d) {
+            if (Math.abs(+d) > 10000 || (Math.abs(d) < 0.001 && Math.abs(d) != 0)) { return scif(d); }
+            if (parseInt(d) == +d) { return intf(d); }
+            return fltf(d);
+          });
+
+    // Brush - for highlighting regions of data
+    var brush = d3.svg.brush()
+        .on("brushstart", brushstart)
+        .on("brush", brush)
+        .on("brushend", brushend);
+
+    // Root panel
+    var svg = container_el.append("svg:svg")
+        .attr("width", label_height + size * x_variables.length + axis_width + padding + legend_width)
+        .attr("height", size * y_variables.length + axis_height + label_height + label_height*filter_descriptions)
+      .append("svg:g")
+        .attr("transform", "translate("+label_height+",0)");
+
+    // Push legend to the side
+    var legend = svg.selectAll("g.legend")
+        .data(colors)
+      .enter().append("svg:g")
+        .attr("class", "legend")
+        .attr("transform", function(d, i) {
+          return "translate(" + (label_height + size * x_variables.length + padding) + "," + (i*20+10) + ")";
+        });
+
+    legend.append("svg:circle")
+        .attr("class", function(d, i) { return color_class(d); })
+        .attr("r", 3);
+
+    legend.append("svg:text")
+        .attr("x", 12)
+        .attr("dy", ".31em")
+        .text(function(d) { return d; });
+
+    // Draw X-axis
+    svg.selectAll("g.x.axis")
+        .data(x_variables)
+      .enter().append("svg:g")
+        .attr("class", "x axis")
+        .attr("transform", function(d, i) { return "translate(" + i * size + ",0)"; })
+        .each(function(d) { d3.select(this).call(x_axis.scale(x[d]).orient("bottom")); });
+
+    // Draw Y-axis
+    svg.selectAll("g.y.axis")
+        .data(y_variables)
+      .enter().append("svg:g")
+        .attr("class", "y axis")
+        .attr("transform", function(d, i) { return "translate(0," + i * size + ")"; })
+        .each(function(d) { d3.select(this).call(y_axis.scale(y[d]).orient("right")); });
+
+    // Draw scatter plot
+    var cell = svg.selectAll("g.cell")
+        .data(cross(x_variables, y_variables))
+      .enter().append("svg:g")
+        .attr("class", "cell")
+        .attr("transform", function(d) { return "translate(" + d.i * size + "," + d.j * size + ")"; })
+        .each(plot);
+
+    // Add titles for y variables
+    cell.filter(function(d) { return d.i == 0; }).append("svg:text")
+        .attr("x", padding-size)
+        .attr("y", -label_height)
+        .attr("dy", ".71em")
+        .attr("transform", function(d) { return "rotate(-90)"; })
+        .text(function(d) { return d.y; });
+
+    function plot(p) {
+      // console.log(p);
+
+      var data_to_draw = data;
+
+      // If drilling, compute what values of the drill variables correspond to
+      // this column.
+      //
+      var filter = {};
+      if (drill_variables.length > 1) {
+        var column = p.i;
+
+        var cap = 1;
+        for (var i=drill_variables.length-1; i > 0; i--) {
+          var var_name = drill_variables[i];
+          var var_value = undefined;
+
+          if (i == drill_variables.length-1) {
+            // for the last drill variable, we index by %
+            var_value = drill_values[i][column % drill_degrees[i]];
+          }
+          else {
+            // otherwise divide by capacity of subsequent variables to get value array index
+            var_value = drill_values[i][parseInt(column/cap)];
+          }
+
+          filter[var_name] = var_value;
+          cap *= drill_degrees[i];
+        }
+
+        data_to_draw = [];
+        data.forEach(function(d) {
+          var pass = true;
+          for (k in filter) { if (d[k] != filter[k]) { pass = false; break; } }
+          if (pass === true) { data_to_draw.push(d); }
+        });
+      }
+
+      var cell = d3.select(this);
+
+      // Frame
+      cell.append("svg:rect")
+          .attr("class", "frame")
+          .attr("x", padding / 2)
+          .attr("y", padding / 2)
+          .attr("width", size - padding)
+          .attr("height", size - padding);
+
+      // Scatter plot dots
+      cell.selectAll("circle")
+          .data(data_to_draw)
+        .enter().append("svg:circle")
+          .attr("class", function(d) { return color_class(d); })
+          .attr("cx", function(d) { return x[p.x](d[p.x]); })
+          .attr("cy", function(d) { return y[p.y](d[p.y]); })
+          .attr("r", 5);
+
+      // Add titles for x variables and drill variable values
+      if (p.j == y_variables.length-1) {
+        cell.append("svg:text")
+            .attr("x", padding)
+            .attr("y", size+axis_height)
+            .attr("dy", ".71em")
+            .text(function(d) { return d.x; });
+
+        if (drill_variables.length > 1) {
+          var i = 0;
+          for (k in filter) {
+            i += 1;
+            cell.append("svg:text")
+                .attr("x", padding)
+                .attr("y", size+axis_height+label_height*i)
+                .attr("dy", ".71em")
+                .text(function(d) { return filter[k]+': '+k; });
+          }
+        }
+      }
+
+      // Brush
+      cell.call(brush.x(x[p.x]).y(y[p.y]));
+    }
+
+    // Clear the previously-active brush, if any
+    function brushstart(p) {
+      if (brush.data !== p) {
+        cell.call(brush.clear());
+        brush.x(x[p.x]).y(y[p.y]).data = p;
+      }
+    }
+
+    // Highlight selected circles
+    function brush(p) {
+      var e = brush.extent();
+      svg.selectAll(".cell circle").attr("class", function(d) {
+        return e[0][0] <= d[p.x] && d[p.x] <= e[1][0]
+            && e[0][1] <= d[p.y] && d[p.y] <= e[1][1]
+            ? color_class(d) : null;
+      });
+    }
+
+    // If brush is empty, select all circles
+    function brushend() {
+      if (brush.empty()) svg.selectAll(".cell circle").attr("class", function(d) {
+        return color_class(d);
+      });
+    }
+
+    function cross(a, b) {
+      var c = [], n = a.length, m = b.length, i, j;
+      for (i = -1; ++i < n;) for (j = -1; ++j < m;) c.push({x: a[i], i: i, y: b[j], j: j});
+      return c;
+    }
+  });
+
+};
+
diff --git a/gn2/wqflask/static/new/javascript/scatterplot.js b/gn2/wqflask/static/new/javascript/scatterplot.js
new file mode 100644
index 00000000..3fea0503
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/scatterplot.js
@@ -0,0 +1,414 @@
+// Generated by CoffeeScript 1.8.0
+var root, scatterplot;
+
+root = typeof exports !== "undefined" && exports !== null ? exports : this;
+
+scatterplot = function() {
+  var axispos, chart, dataByInd, height, margin, nxticks, nyticks, pointcolor, pointsSelect, pointsize, pointstroke, rectcolor, rotate_ylab, title, titlepos, width, xNA, xlab, xlim, xscale, xticks, xvar, yNA, ylab, ylim, yscale, yticks, yvar;
+  width = 800;
+  height = 600;
+  margin = {
+    left: 60,
+    top: 40,
+    right: 40,
+    bottom: 40,
+    inner: 5
+  };
+  axispos = {
+    xtitle: 25,
+    ytitle: 45,
+    xlabel: 5,
+    ylabel: 5
+  };
+  titlepos = 20;
+  xNA = {
+    handle: true,
+    force: false,
+    width: 15,
+    gap: 10
+  };
+  yNA = {
+    handle: true,
+    force: false,
+    width: 15,
+    gap: 10
+  };
+  xlim = null;
+  ylim = null;
+  nxticks = 5;
+  xticks = null;
+  nyticks = 5;
+  yticks = null;
+  rectcolor = d3.rgb(230, 230, 230);
+  pointcolor = null;
+  pointstroke = "black";
+  pointsize = 3;
+  title = "Correlation Scatterplot";
+  xlab = "X";
+  ylab = "Y";
+  rotate_ylab = null;
+  yscale = d3.scale.linear();
+  xscale = d3.scale.linear();
+  xvar = 0;
+  yvar = 1;
+  pointsSelect = null;
+  dataByInd = false;
+  chart = function(selection) {
+    return selection.each(function(data) {
+      var g, gEnter, group, i, indID, indtip, maxx, minx, na_value, ngroup, panelheight, paneloffset, panelwidth, points, svg, titlegrp, x, xaxis, xrange, xs, y, yaxis, yrange, ys, _i, _ref, _ref1, _ref2, _results;
+      if (dataByInd) {
+        x = data.data.map(function(d) {
+          return d[xvar];
+        });
+        y = data.data.map(function(d) {
+          return d[yvar];
+        });
+      } else {
+        x = data.data[xvar];
+        y = data.data[yvar];
+      }
+
+      indID = (_ref = data != null ? data.indID : void 0) != null ? _ref : null;
+      indID = indID != null ? indID : (function() {
+        _results = [];
+        for (var _i = 1, _ref1 = x.length; 1 <= _ref1 ? _i <= _ref1 : _i >= _ref1; 1 <= _ref1 ? _i++ : _i--){ _results.push(_i); }
+        return _results;
+      }).apply(this);
+
+      group = (_ref2 = data != null ? data.group : void 0) != null ? _ref2 : (function() {
+        var _j, _len, _results1;
+        _results1 = [];
+        for (_j = 0, _len = x.length; _j < _len; _j++) {
+          i = x[_j];
+          _results1.push(1);
+        }
+        return _results1;
+      })();
+      ngroup = d3.max(group);
+      group = (function() {
+        var _j, _len, _results1;
+        _results1 = [];
+        for (_j = 0, _len = group.length; _j < _len; _j++) {
+          g = group[_j];
+          _results1.push(g - 1);
+        }
+        return _results1;
+      })();
+      pointcolor = pointcolor != null ? pointcolor : selectGroupColors(ngroup, "dark");
+      pointcolor = expand2vector(pointcolor, ngroup);
+      if (x.every(function(v) {
+        return (v != null) && !xNA.force;
+      })) {
+        xNA.handle = false;
+      }
+      if (y.every(function(v) {
+        return (v != null) && !yNA.force;
+      })) {
+        yNA.handle = false;
+      }
+      if (xNA.handle) {
+        paneloffset = xNA.width + xNA.gap;
+        panelwidth = width - paneloffset;
+      } else {
+        paneloffset = 0;
+        panelwidth = width;
+      }
+      if (yNA.handle) {
+        panelheight = height - (yNA.width + yNA.gap);
+      } else {
+        panelheight = height;
+      }
+      xlim = xlim != null ? xlim : d3.extent(x);
+      ylim = ylim != null ? ylim : d3.extent(y);
+      na_value = d3.min(x.concat(y)) - 100;
+      svg = d3.select(this).selectAll("svg").data([data]);
+      gEnter = svg.enter().append("svg").append("g");
+      svg.attr("width", width + margin.left + margin.right).attr("height", height + margin.top + margin.bottom);
+      g = svg.select("g");
+      g.append("rect").attr("x", paneloffset + margin.left).attr("y", margin.top).attr("height", panelheight).attr("width", panelwidth).attr("fill", rectcolor).attr("stroke", "none");
+      if (xNA.handle) {
+        g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", panelheight).attr("width", xNA.width).attr("fill", rectcolor).attr("stroke", "none");
+      }
+      if (xNA.handle && yNA.handle) {
+        g.append("rect").attr("x", margin.left).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", xNA.width).attr("fill", rectcolor).attr("stroke", "none");
+      }
+      if (yNA.handle) {
+        g.append("rect").attr("x", margin.left + paneloffset).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", panelwidth).attr("fill", rectcolor).attr("stroke", "none");
+      }
+      xrange = [margin.left + paneloffset + margin.inner, margin.left + paneloffset + panelwidth - margin.inner];
+      yrange = [margin.top + panelheight - margin.inner, margin.top + margin.inner];
+      xscale.domain(xlim).range(xrange);
+      yscale.domain(ylim).range(yrange);
+      xs = d3.scale.linear().domain(xlim).range(xrange);
+      ys = d3.scale.linear().domain(ylim).range(yrange);
+      if (xNA.handle) {
+        xscale.domain([na_value].concat(xlim)).range([margin.left + xNA.width / 2].concat(xrange));
+        x = x.map(function(e) {
+          if (e != null) {
+            return e;
+          } else {
+            return na_value;
+          }
+        });
+      }
+      if (yNA.handle) {
+        yscale.domain([na_value].concat(ylim)).range([height + margin.top - yNA.width / 2].concat(yrange));
+        y = y.map(function(e) {
+          if (e != null) {
+            return e;
+          } else {
+            return na_value;
+          }
+        });
+      }
+      minx = xlim[0];
+      maxx = xlim[1];
+      yticks = yticks != null ? yticks : ys.ticks(nyticks);
+      xticks = xticks != null ? xticks : xs.ticks(nxticks);
+      titlegrp = g.append("g").attr("class", "title").append("text").attr("x", margin.left + width / 2).attr("y", margin.top - titlepos).style("fill", "black").style("font-size", "24px").text(title);
+      xaxis = g.append("g").attr("class", "x axis");
+      xaxis.selectAll("empty").data(xticks).enter().append("line").attr("x1", function(d) {
+        return xscale(d);
+      }).attr("x2", function(d) {
+        return xscale(d);
+      }).attr("y1", margin.top).attr("y2", margin.top + height).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
+      xaxis.selectAll("empty").data(xticks).enter().append("text").attr("x", function(d) {
+        return xscale(d);
+      }).attr("y", margin.top + height + axispos.xlabel).text(function(d) {
+        return formatAxis(xticks)(d);
+      });
+      xaxis.append("text").attr("class", "title").attr("x", margin.left + width / 2).attr("y", margin.top + height + axispos.xtitle).style("fill", "black").text(xlab);
+      if (xNA.handle) {
+        xaxis.append("text").attr("x", margin.left + xNA.width / 2).attr("y", margin.top + height + axispos.xlabel).text("N/A");
+      }
+      rotate_ylab = rotate_ylab != null ? rotate_ylab : ylab.length > 1;
+      yaxis = g.append("g").attr("class", "y axis");
+      yaxis.selectAll("empty").data(yticks).enter().append("line").attr("y1", function(d) {
+        return yscale(d);
+      }).attr("y2", function(d) {
+        return yscale(d);
+      }).attr("x1", margin.left).attr("x2", margin.left + width).attr("fill", "none").attr("stroke", "white").attr("stroke-width", 1).style("pointer-events", "none");
+      yaxis.selectAll("empty").data(yticks).enter().append("text").attr("y", function(d) {
+        return yscale(d);
+      }).attr("x", margin.left - axispos.ylabel).text(function(d) {
+        return formatAxis(yticks)(d);
+      });
+      yaxis.append("text").attr("class", "title").attr("y", margin.top + height / 2).attr("x", margin.left - axispos.ytitle).style("fill", "black").text(ylab).attr("transform", rotate_ylab ? "rotate(270," + (margin.left - axispos.ytitle) + "," + (margin.top + height / 2) + ")" : "");
+      if (yNA.handle) {
+        yaxis.append("text").attr("x", margin.left - axispos.ylabel).attr("y", margin.top + height - yNA.width / 2).text("N/A");
+      }
+      indtip = d3.tip().attr('class', 'd3-tip').html(function(d, i) {
+        return indID[i];
+      }).direction('e').offset([0, 10]);
+      svg.call(indtip);
+      if (js_data.slope && js_data.intercept) {
+        g.append("line").attr("x1", xscale(minx) - margin.inner).attr('y1', yscale(js_data.slope * minx + js_data.intercept)).attr("x2", xscale(maxx * 1) + margin.inner).attr("y2", yscale(slope * maxx * 1 + intercept)).style("stroke", "black").style("stroke-width", 2);
+      }
+      points = g.append("g").attr("id", "points");
+      pointsSelect = points.selectAll("empty").data(d3.range(x.length)).enter().append("circle").attr("cx", function(d, i) {
+        return xscale(x[i]);
+      }).attr("cy", function(d, i) {
+        return yscale(y[i]);
+      }).attr("class", function(d, i) {
+        return "pt" + i;
+      }).attr("r", pointsize).attr("fill", function(d, i) {
+        return pointcolor[group[i]];
+      }).attr("stroke", pointstroke).attr("stroke-width", "1").attr("opacity", function(d, i) {
+        if (((x[i] != null) || xNA.handle) && ((y[i] != null) || yNA.handle)) {
+          return 1;
+        }
+        return 0;
+      }).on("mouseover.paneltip", indtip.show).on("mouseout.paneltip", indtip.hide);
+      g.append("rect").attr("x", margin.left + paneloffset).attr("y", margin.top).attr("height", panelheight).attr("width", panelwidth).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+      if (xNA.handle) {
+        g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", panelheight).attr("width", xNA.width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+      }
+      if (xNA.handle && yNA.handle) {
+        g.append("rect").attr("x", margin.left).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", xNA.width).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+      }
+      if (yNA.handle) {
+        return g.append("rect").attr("x", margin.left + paneloffset).attr("y", margin.top + height - yNA.width).attr("height", yNA.width).attr("width", panelwidth).attr("fill", "none").attr("stroke", "black").attr("stroke-width", "none");
+      }
+    });
+  };
+  chart.width = function(value) {
+    if (!arguments.length) {
+      return width;
+    }
+    width = value;
+    return chart;
+  };
+  chart.height = function(value) {
+    if (!arguments.length) {
+      return height;
+    }
+    height = value;
+    return chart;
+  };
+  chart.margin = function(value) {
+    if (!arguments.length) {
+      return margin;
+    }
+    margin = value;
+    return chart;
+  };
+  chart.axispos = function(value) {
+    if (!arguments.length) {
+      return axispos;
+    }
+    axispos = value;
+    return chart;
+  };
+  chart.titlepos = function(value) {
+    if (!arguments.length) {
+      return titlepos;
+    }
+    titlepos;
+    return chart;
+  };
+  chart.xlim = function(value) {
+    if (!arguments.length) {
+      return xlim;
+    }
+    xlim = value;
+    return chart;
+  };
+  chart.nxticks = function(value) {
+    if (!arguments.length) {
+      return nxticks;
+    }
+    nxticks = value;
+    return chart;
+  };
+  chart.xticks = function(value) {
+    if (!arguments.length) {
+      return xticks;
+    }
+    xticks = value;
+    return chart;
+  };
+  chart.ylim = function(value) {
+    if (!arguments.length) {
+      return ylim;
+    }
+    ylim = value;
+    return chart;
+  };
+  chart.nyticks = function(value) {
+    if (!arguments.length) {
+      return nyticks;
+    }
+    nyticks = value;
+    return chart;
+  };
+  chart.yticks = function(value) {
+    if (!arguments.length) {
+      return yticks;
+    }
+    yticks = value;
+    return chart;
+  };
+  chart.rectcolor = function(value) {
+    if (!arguments.length) {
+      return rectcolor;
+    }
+    rectcolor = value;
+    return chart;
+  };
+  chart.pointcolor = function(value) {
+    if (!arguments.length) {
+      return pointcolor;
+    }
+    pointcolor = value;
+    return chart;
+  };
+  chart.pointsize = function(value) {
+    if (!arguments.length) {
+      return pointsize;
+    }
+    pointsize = value;
+    return chart;
+  };
+  chart.pointstroke = function(value) {
+    if (!arguments.length) {
+      return pointstroke;
+    }
+    pointstroke = value;
+    return chart;
+  };
+  chart.dataByInd = function(value) {
+    if (!arguments.length) {
+      return dataByInd;
+    }
+    dataByInd = value;
+    return chart;
+  };
+  chart.title = function(value) {
+    if (!arguments.length) {
+      return title;
+    }
+    title = value;
+    return chart;
+  };
+  chart.xlab = function(value) {
+    if (!arguments.length) {
+      return xlab;
+    }
+    xlab = value;
+    return chart;
+  };
+  chart.ylab = function(value) {
+    if (!arguments.length) {
+      return ylab;
+    }
+    ylab = value;
+    return chart;
+  };
+  chart.rotate_ylab = function(value) {
+    if (!arguments.length) {
+      return rotate_ylab;
+    }
+    rotate_ylab = value;
+    return chart;
+  };
+  chart.xvar = function(value) {
+    if (!arguments.length) {
+      return xvar;
+    }
+    xvar = value;
+    return chart;
+  };
+  chart.yvar = function(value) {
+    if (!arguments.length) {
+      return yvar;
+    }
+    yvar = value;
+    return chart;
+  };
+  chart.xNA = function(value) {
+    if (!arguments.length) {
+      return xNA;
+    }
+    xNA = value;
+    return chart;
+  };
+  chart.yNA = function(value) {
+    if (!arguments.length) {
+      return yNA;
+    }
+    yNA = value;
+    return chart;
+  };
+  chart.yscale = function() {
+    return yscale;
+  };
+  chart.xscale = function() {
+    return xscale;
+  };
+  chart.pointsSelect = function() {
+    return pointsSelect;
+  };
+  return chart;
+};
+
+root.scatterplot = scatterplot;
diff --git a/gn2/wqflask/static/new/javascript/search_autocomplete.js b/gn2/wqflask/static/new/javascript/search_autocomplete.js
new file mode 100644
index 00000000..10c22c95
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/search_autocomplete.js
@@ -0,0 +1,173 @@
+        //replace with gn search hints
+
+
+   
+    
+
+        function autocomplete(inp, arr) {
+            /*the autocomplete function takes two arguments,
+            the text field element and an array of possible autocompleted values:*/
+            var currentFocus;
+            /*execute a function when someone writes in the text field:*/
+
+            inp.addEventListener("focus", function(e) {
+
+
+                var a, b, i, val = this.value;
+                closeAllLists();
+                currentFocus = -1;
+                a = document.createElement("DIV");
+                a.setAttribute("id", this.id + "autocomplete-list");
+                a.setAttribute("class", "autocomplete-items");
+                this.parentNode.appendChild(a);
+                let historySearch = retrieveSearchHistory().splice(0, 5)
+                let text_title = document.createElement("DIV")
+                text_title.innerHTML = "<strong>RECENT SEARCH</strong><input id='clear_all'  type='button' value='clear_all'>";
+                text_title.setAttribute("class", "recent-search-title")
+                text_title.setAttribute('disabled', true);
+
+                a.appendChild(text_title);
+                for (i = 0; i < historySearch.length; i++) {
+                    b = document.createElement("DIV");
+                    b.innerHTML = "<span>" + historySearch[i].substr(0, val.length) + "</span>";
+                    b.style.color = "blue";
+                    b.innerHTML += historySearch[i].substr(val.length);
+                    b.innerHTML += "<input type='hidden' value='" + historySearch[i] + "'>";
+                    b.addEventListener("click", function(e) {
+                        inp.value = this.getElementsByTagName("input")[0].value;
+                        closeAllLists();
+                    });
+                    a.appendChild(b);
+
+                }
+                    document.getElementById("clear_all").addEventListener("click",(event)=>{
+                        
+
+                        deleteSearchHistory()
+                    })
+  
+            });
+
+
+
+            inp.addEventListener("input", function(e) {
+                var a, b, i, val = this.value;
+                /*close any already open lists of autocompleted values*/
+                closeAllLists();
+                if (!val) { return false; }
+                currentFocus = -1;
+                /*create a DIV element that will contain the items (values):*/
+                a = document.createElement("DIV");
+                a.setAttribute("id", this.id + "autocomplete-list");
+                a.setAttribute("class", "autocomplete-items");
+                /*append the DIV element as a child of the autocomplete container:*/
+                this.parentNode.appendChild(a);
+                /*for each item in the array...*/
+                for (i = 0; i < arr.length; i++) {
+                    /*check if the item starts with the same letters as the text field value:*/
+                    if (arr[i].substr(0, val.length).toUpperCase() == val.toUpperCase()) {
+                        /*create a DIV element for each matching element:*/
+                        b = document.createElement("DIV");
+                        /*make the matching letters bold:*/
+                        b.innerHTML = "<strong>" + arr[i].substr(0, val.length) + "</strong>";
+                        b.innerHTML += arr[i].substr(val.length);
+                        /*insert a input field that will hold the current array item's value:*/
+                        b.innerHTML += "<input type='hidden' value='" + arr[i] + "'>";
+                        /*execute a function when someone clicks on the item value (DIV element):*/
+                        b.addEventListener("click", function(e) {
+                            /*insert the value for the autocomplete text field:*/
+                            inp.value = this.getElementsByTagName("input")[0].value;
+                            /*close the list of autocompleted values,
+                            (or any other open lists of autocompleted values:*/
+                            closeAllLists();
+                        });
+                        a.appendChild(b);
+                    }
+                }
+            });
+            /*execute a function presses a key on the keyboard:*/
+            inp.addEventListener("keydown", function(e) {
+                var x = document.getElementById(this.id + "autocomplete-list");
+                if (x) x = x.getElementsByTagName("div");
+                if (e.keyCode == 40) {
+                    /*If the arrow DOWN key is pressed,
+                    increase the currentFocus variable:*/
+                    currentFocus++;
+                    /*and and make the current item more visible:*/
+                    addActive(x);
+                } else if (e.keyCode == 38) { //up
+                    /*If the arrow UP key is pressed,
+                    decrease the currentFocus variable:*/
+                    currentFocus--;
+                    /*and and make the current item more visible:*/
+                    addActive(x);
+                } else if (e.keyCode == 13) {
+                    /*If the ENTER key is pressed, prevent the form from being submitted,*/
+                    e.preventDefault();
+                    if (currentFocus > -1) {
+                        /*and simulate a click on the "active" item:*/
+                        if (x) x[currentFocus].click();
+                    }
+                }
+            });
+
+            function addActive(x) {
+                /*a function to classify an item as "active":*/
+                if (!x) return false;
+                /*start by removing the "active" class on all items:*/
+                removeActive(x);
+                if (currentFocus >= x.length) currentFocus = 0;
+                if (currentFocus < 0) currentFocus = (x.length - 1);
+                /*add class "autocomplete-active":*/
+                x[currentFocus].classList.add("autocomplete-active");
+            }
+
+            function removeActive(x) {
+                /*a function to remove the "active" class from all autocomplete items:*/
+                for (var i = 0; i < x.length; i++) {
+                    x[i].classList.remove("autocomplete-active");
+                }
+            }
+
+            function closeAllLists(elmnt) {
+                /*close all autocomplete lists in the document,
+                except the one passed as an argument:*/
+                var x = document.getElementsByClassName("autocomplete-items");
+                for (var i = 0; i < x.length; i++) {
+                    if (elmnt != x[i] && elmnt != inp) {
+                        x[i].parentNode.removeChild(x[i]);
+                    }
+                }
+            }
+
+
+
+            /*execute a function when someone clicks in the document:*/
+            document.addEventListener("click", function(e) {
+                closeAllLists(e.target);
+            })
+
+        }
+
+        function retrieveSearchHistory() {
+            let results = localStorage.getItem("gn_search_history")
+
+            return results ? JSON.parse(results) : []
+        }
+
+
+
+
+
+        function saveBeforeSubmit(new_search) {
+
+            let search = retrieveSearchHistory()
+            search.unshift(new_search)
+
+            localStorage.setItem("gn_search_history", JSON.stringify([...new Set(search)].splice(0,8)))
+
+        }
+
+        function deleteSearchHistory(){
+            localStorage.setItem("gn_search_history", [])
+        }
\ No newline at end of file
diff --git a/gn2/wqflask/static/new/javascript/search_results.js b/gn2/wqflask/static/new/javascript/search_results.js
new file mode 100644
index 00000000..c263ef49
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/search_results.js
@@ -0,0 +1,386 @@
+change_buttons = function(check_node = 0) {
+  var button, buttons, item, num_checked, text, _i, _j, _k, _l, _len, _len2, _len3, _len4, _results, _results2;
+  buttons = ["#add", "#remove"];
+
+  num_checked = 0
+  table_api = $('#trait_table').DataTable();
+  check_cells = table_api.column(0).nodes().to$();
+  for (let i = 0; i < check_cells.length; i++) {
+    if (check_cells[i].childNodes[check_node].checked){
+      num_checked += 1
+    }
+  }
+
+  if (num_checked === 0) {
+    for (_i = 0, _len = buttons.length; _i < _len; _i++) {
+      button = buttons[_i];
+      $(button).prop("disabled", true);
+    }
+  } else {
+    for (_j = 0, _len2 = buttons.length; _j < _len2; _j++) {
+      button = buttons[_j];
+      $(button).prop("disabled", false);
+    }
+  }
+};
+
+$(function() {
+  let selectAll, deselectAll, invert;
+
+  selectAll = function() {
+    table_api = $('#trait_table').DataTable();
+
+    check_cells = table_api.column(0).nodes().to$();
+    for (let i = 0; i < check_cells.length; i++) {
+      check_cells[i].childNodes[0].checked = true;
+    }
+
+    check_rows = table_api.rows().nodes();
+    for (let i =0; i < check_rows.length; i++) {
+      check_rows[i].classList.add("selected");
+    }
+
+    change_buttons();
+  };
+
+  deselectAll = function() {
+    table_api = $('#trait_table').DataTable();
+
+    check_cells = table_api.column(0).nodes().to$();
+    for (let i = 0; i < check_cells.length; i++) {
+      check_cells[i].childNodes[0].checked = false;
+    }
+
+    check_rows = table_api.rows().nodes();
+    for (let i =0; i < check_rows.length; i++) {
+      check_rows[i].classList.remove("selected")
+    }
+
+    change_buttons();
+  };
+
+  invert = function() {
+    table_api = $('#trait_table').DataTable();
+
+    check_cells = table_api.column(0).nodes().to$();
+    for (let i = 0; i < check_cells.length; i++) {
+      if (check_cells[i].childNodes[0].checked){
+        check_cells[i].childNodes[0].checked = false;
+      } else {
+        check_cells[i].childNodes[0].checked = true;
+      }
+    }
+
+    check_rows = table_api.rows().nodes();
+    for (let i =0; i < check_rows.length; i++) {
+      if (check_rows[i].classList.contains("selected")){
+        check_rows[i].classList.remove("selected")
+      } else {
+        check_rows[i].classList.add("selected")
+      }
+    }
+
+    change_buttons();
+  };
+
+  $('#searchbox').keyup(function(){
+      if ($(this).val() != ""){
+        $('#filter_term').val($(this).val());
+      } else {
+        $('#filter_term').val("None");
+      }
+      $('#trait_table').DataTable().search($(this).val()).draw();
+  });
+
+  /**
+   * parseIndexString takes a string consisting of integers,
+   * hyphens, and/or commas to indicate range(s) of indices
+   * to select a rows and returns the corresponding set of indices
+   * For example - "1, 5-10, 15" would return a set of 8 rows
+   * @return {Set} The list of indices as a Set
+   */
+  parseIndexString = function(idx_string) {
+    index_list = [];
+
+    _ref = idx_string.split(",");
+    for (_i = 0; _i < _ref.length; _i++) {
+      index_set = _ref[_i];
+      if (!/^ *([0-9]+$) *| *([0-9]+ *- *[0-9]+$) *|(^$)$/.test(index_set)) {
+        $('#select_samples_invalid').show();
+        break
+      } else {
+        $('#select_samples_invalid').hide();
+      }
+      if (index_set.indexOf('-') !== -1) {
+          start_index = parseInt(index_set.split("-")[0]);
+          end_index = parseInt(index_set.split("-")[1]);
+
+          // If start index is higher than end index (for example is the string "10-5" exists) swap values so it'll be interpreted as "5-10" instead
+          if (start_index > end_index) {
+            [start_index, end_index] = [end_index, start_index]
+          }
+
+          for (index = start_index; index <= end_index; index++) {
+            index_list.push(index);
+          }
+      } else {
+        index = parseInt(index_set);
+        index_list.push(index);
+      }
+    }
+    return new Set(index_list)
+  }
+
+  filterByIndex = function() {
+    indexString = $('#select_top').val()
+    indexSet = parseIndexString(indexString)
+
+    tableApi = $('#trait_table').DataTable();
+    checkNodes = tableApi.column(0).nodes().to$();
+    checkNodes.each(function(index) {
+      if (indexSet.has(index + 1)){
+        $(this)[0].childNodes[0].checked = true
+      }
+    })
+
+    checkRows = tableApi.rows().nodes().to$();
+    checkRows.each(function(index) {
+      if (indexSet.has(index + 1)){
+        $(this)[0].classList.add("selected");
+      }
+    })
+  }
+
+  $(window).keydown(function(event){
+    if((event.keyCode == 13)) {
+      event.preventDefault();
+      return false;
+    }
+  });
+
+  $('#select_top').keyup(function(event){
+    if (event.keyCode === 13) {
+      filterByIndex()
+    }
+  });
+
+  $('#select_top').blur(function() {
+    filterByIndex()
+  });
+
+  addToCollection = function() {
+    var traits;
+    table_api = $('#trait_table').DataTable();
+    check_nodes = table_api.column(0).nodes().to$();
+    traits = Array.from(check_nodes.map(function() {
+      if ($(this)[0].childNodes[0].checked){
+        return $(this)[0].childNodes[0].value
+      }
+    }))
+
+    var traits_hash = md5(traits.toString());
+
+    $.ajax({
+          type: "POST",
+          url: "/collections/store_trait_list",
+          data: {
+            hash: traits_hash,
+            traits: traits.toString()
+          }
+    });
+
+    return $.colorbox({
+	href: "/collections/add",
+	data: {
+	    "traits": traits.toString(),
+	    "hash": traits_hash
+	}
+    });
+
+  };
+
+  submitBnw = function() {
+    trait_data = submitTraits("trait_table", "submit_bnw")
+  }
+
+  exportTraits = function() {
+    trait_data = submitTraits("trait_table", "export_traits_csv")
+  };
+
+  exportCollection = function() {
+    trait_data = submitTraits("trait_table", "export_collection")
+  }
+
+  fetchTraits = function(table_name){
+    trait_table = $('#'+table_name);
+    table_dict = {};
+
+    headers = [];
+    trait_table.find('th').each(function () {
+      if ($(this).data('export')){
+        headers.push($(this).data('export'))
+      }
+    });
+    table_dict['headers'] = headers;
+
+    selected_rows = [];
+    all_rows = []; // If no rows are checked, export all
+    table_api = $('#' + table_name).DataTable();
+    check_cells = table_api.column(0).nodes().to$();
+    for (let i = 0; i < check_cells.length; i++) {
+      this_node = check_cells[i].childNodes[0];
+      all_rows.push(this_node.value)
+      if (this_node.checked){
+        selected_rows.push(this_node.value)
+      }
+    }
+
+    if (selected_rows.length > 0){
+      table_dict['rows'] = selected_rows;
+    } else {
+      table_dict['rows'] = all_rows;
+    }
+
+    json_table_dict = JSON.stringify(table_dict);
+    $('input[name=export_data]').val(json_table_dict);
+  }
+
+  submitTraits = function(table_name, destination) {
+    fetchTraits(table_name);
+    $('#export_form').attr('action', '/' + destination);
+    $('#export_form').submit();
+  };
+
+  getTraitsFromTable = function(){
+    traits = $("#trait_table input:checked").map(function() {
+      return $(this).val();
+    }).get();
+    if (traits.length == 0){
+      num_traits = $("#trait_table input").length
+      if (num_traits <= 100){
+        traits = $("#trait_table input").map(function() {
+          return $(this).val();
+        }).get();
+      }
+    }
+    return traits
+  }
+
+  $("#corr_matrix").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      $("input[name=tool_used]").val("Correlation Matrix")
+      $("input[name=form_url]").val($(this).data("url"))
+      return submit_special("/loading")
+  });
+  $("#network_graph").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      $("input[name=tool_used]").val("Network Graph")
+      $("input[name=form_url]").val($(this).data("url"))
+      return submit_special("/loading")
+  });
+  $("#wgcna_setup").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      $("input[name=tool_used]").val("WGCNA Setup")
+      $("input[name=form_url]").val($(this).data("url"))
+      return submit_special("/loading")
+  });
+  $("#ctl_setup").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      $("input[name=tool_used]").val("CTL Setup")
+      $("input[name=form_url]").val($(this).data("url"))
+      return submit_special("/loading")
+  });
+  $("#heatmap").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      $("input[name=tool_used]").val("Heatmap")
+      $("input[name=form_url]").val($(this).data("url"))
+      return submit_special("/loading")
+  });
+  $("#comp_bar_chart").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      $("input[name=tool_used]").val("Comparison Bar Chart")
+      $("input[name=form_url]").val($(this).data("url"))
+      return submit_special("/loading")
+  });
+
+  $("#send_to_webgestalt, #send_to_bnw, #send_to_geneweaver").on("click", function() {
+      traits = getTraitsFromTable()
+      $("#trait_list").val(traits)
+      url = $(this).data("url")
+      return submit_special(url)
+  });
+
+
+  $("#select_all").click(selectAll);
+  $("#deselect_all").click(deselectAll);
+  $("#invert").click(invert);
+  $("#add").click(addToCollection);
+  $("#submit_bnw").click(submitBnw);
+  $("#export_traits").click(exportTraits);
+  $("#export_collection").click(exportCollection);
+
+  let naturalAsc = $.fn.dataTableExt.oSort["natural-ci-asc"]
+  let naturalDesc = $.fn.dataTableExt.oSort["natural-ci-desc"]
+
+  let na_equivalent_vals = ["N/A", "--", ""]; //ZS: Since there are multiple values that should be treated the same as N/A
+
+  function extractInnerText(the_string){
+    var span = document.createElement('span');
+    span.innerHTML = the_string;
+    return span.textContent || span.innerText;
+  }
+
+  function sortNAs(a, b, sort_function){
+    if ( na_equivalent_vals.includes(a) && na_equivalent_vals.includes(b)) {
+      return 0;
+    }
+    if (na_equivalent_vals.includes(a)){
+      return 1
+    }
+    if (na_equivalent_vals.includes(b)) {
+      return -1;
+    }
+    return sort_function(a, b)
+  }
+
+  $.extend( $.fn.dataTableExt.oSort, {
+    "natural-minus-na-asc": function (a, b) {
+      return sortNAs(extractInnerText(a), extractInnerText(b), naturalAsc)
+    },
+    "natural-minus-na-desc": function (a, b) {
+      return sortNAs(extractInnerText(a), extractInnerText(b), naturalDesc)
+    }
+  });
+
+  $.fn.dataTable.ext.order['dom-checkbox'] = function  ( settings, col )
+  {
+      return this.api().column( col, {order:'index'} ).nodes().map( function ( td, i ) {
+          return $('input', td).prop('checked') ? '1' : '0';
+      } );
+  };
+
+  $.fn.dataTable.ext.order['dom-inner-text'] = function  ( settings, col )
+  {
+      return this.api().column( col, {order:'index'} ).nodes().map( function ( td, i ) {
+          return $(td).text();
+      } );
+  }
+
+  applyDefault = function() {
+    let default_collection_id = $.cookie('default_collection');
+    if (default_collection_id) {
+      let the_option = $('[name=existing_collection] option').filter(function() {
+        return ($(this).text().split(":")[0] == default_collection_id);
+      })
+      the_option.prop('selected', true);
+    }
+  }
+  applyDefault();
+
+});
diff --git a/gn2/wqflask/static/new/javascript/show_trait.js b/gn2/wqflask/static/new/javascript/show_trait.js
new file mode 100644
index 00000000..c5214947
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/show_trait.js
@@ -0,0 +1,1677 @@
+var statTableRows, isNumber,
+  __hasProp = {}.hasOwnProperty,
+  __slice = [].slice;
+
+isNumber = function(o) {
+  return !isNaN((o - 0) && o !== null);
+};
+
+statTableRows = [
+  {
+    vn: "n_of_samples",
+    pretty: "N of Samples",
+    digits: 0
+  }, {
+    vn: "mean",
+    pretty: "Mean",
+    digits: 3
+  }, {
+    vn: "median",
+    pretty: "Median",
+    digits: 3
+  }, {
+    vn: "std_error",
+    pretty: "Standard Error (SE)",
+    digits: 3
+  }, {
+    vn: "std_dev",
+    pretty: "Standard Deviation (SD)",
+    digits: 3
+  }, {
+    vn: "min",
+    pretty: "Minimum",
+    digits: 3
+  }, {
+    vn: "max",
+    pretty: "Maximum",
+    digits: 3
+  }
+]
+
+if (js_data.dataset_type == "ProbeSet"){
+  if (js_data.data_scale == "linear_positive" || js_data.data_scale == "log2") {
+    statTableRows.push({
+                           vn: "range",
+                           pretty: "Range (log2)",
+                           digits: 3
+                         })
+  } else {
+    statTableRows.push({
+                           vn: "range",
+                           pretty: "Range",
+                           digits: 3
+                         })
+  }
+} else {
+  statTableRows.push({
+                       vn: "range",
+                       pretty: "Range",
+                       digits: 3
+                     })
+}
+
+statTableRows.push(
+  {
+    vn: "range_fold",
+    pretty: "Range (fold)",
+    digits: 3
+  }, {
+    vn: "interquartile",
+    pretty: "<font color='black'>Interquartile Range</font>",
+    url: "http://www.genenetwork.org/glossary.html#Interquartile",
+    digits: 3
+  }, {
+    vn: "skewness",
+    pretty: "Skewness",
+    url: "https://en.wikipedia.org/wiki/Skewness",
+    digits: 3
+  }, {
+    vn: "kurtosis",
+    pretty: "Excess Kurtosis",
+    url: "https://en.wikipedia.org/wiki/Kurtosis",
+    digits: 3
+  }
+);
+
+toggleDescription = function() {
+  if ($('.truncDesc').is(':visible')) {
+    $('.truncDesc').hide();
+    $('.fullDesc').show();
+  } else {
+    $('.truncDesc').show();
+    $('.fullDesc').hide();
+  }
+}
+
+add = function() {
+  var trait;
+  trait = $("input[name=trait_hmac]").val();
+  return $.colorbox({
+    href: "/collections/add",
+    data: {
+      "traits": trait
+    }
+  });
+};
+$('#add_to_collection').click(add);
+
+sampleLists = js_data.sample_lists;
+sampleGroupTypes = js_data.sample_group_types;
+
+$(".select_covariates").click(function () {
+  openCovariateSelection();
+});
+
+$(".remove_covariates").click(function () {
+  $(".selected-covariates option:selected").each(function() {
+    this_val = $(this).val();
+    $(".selected-covariates option").each(function(){
+      if ($(this).val() == this_val){
+        $(this).remove();
+      }
+    })
+    cofactor_count = $(".selected-covariates:first option").length
+    if (cofactor_count > 2 && cofactor_count < 11){
+      $(".selected-covariates").each(function() {
+        $(this).attr("size", $(".selected-covariates:first option").length)
+      });
+    } else if (cofactor_count > 10) {
+      $(".selected-covariates").each(function() {
+        $(this).attr("size", 10)
+      });
+    } else {
+      $(".selected-covariates").each(function() {
+        $(this).attr("size", 2)
+      });
+    }
+    if (cofactor_count == 0){
+      $(".selected-covariates").each(function() {
+        $(this).append($("<option/>", {
+          value: "",
+          text: "No covariates selected"
+        }))
+      })
+    }
+  });
+
+  covariates_list = [];
+  $(".selected-covariates:first option").each(function() {
+    covariates_list.push($(this).val());
+  })
+  $("input[name=covariates]").val(covariates_list.join(","))
+});
+
+$(".remove_all_covariates").click(function() {
+  $(".selected-covariates option").each(function() {
+    $(this).remove();
+  });
+  $(".selected-covariates").attr("size", 2)
+  $("input[name=covariates]").val("");
+})
+
+openTraitSelection = function() {
+  return $('#collections_holder').load('/collections/list?color_by_trait #collections_list', (function(_this) {
+    return function() {
+      $.colorbox({
+        inline: true,
+        href: "#collections_holder",
+        onComplete: function(){
+            $.getScript("/static/new/javascript/get_traits_from_collection.js");
+        }
+      });
+      return $('a.collection_name').attr('onClick', 'return false');
+    };
+  })(this));
+};
+openCovariateSelection = function() {
+  return $('#collections_holder').load('/collections/list #collections_list', (function(_this) {
+    return function() {
+      $.colorbox({
+        inline: true,
+        href: "#collections_holder",
+        width: "1000px",
+        height: "700px",
+        onComplete: function(){
+            $.getScript("/static/new/javascript/get_covariates_from_collection.js");
+        }
+      });
+      return $('a.collection_name').attr('onClick', 'return false');
+    };
+  })(this));
+};
+hideTabs = function(start) {
+  var x, _i, _results;
+  _results = [];
+  for (x = _i = start; start <= 10 ? _i <= 10 : _i >= 10; x = start <= 10 ? ++_i : --_i) {
+    _results.push($("#stats_tabs" + x).hide());
+  }
+  return _results;
+};
+statsMdpChange = function() {
+  var selected;
+  selected = $(this).val();
+  hideTabs(0);
+  return $("#stats_tabs" + selected).show();
+};
+changeStatsValue = function(sample_sets, category, value_type, decimal_places, effects) {
+  var current_value, id, in_box, the_value, title_value;
+  id = "#" + processId(category, value_type);
+  in_box = $(id).html;
+  current_value = parseFloat($(in_box)).toFixed(decimal_places);
+  the_value = sample_sets[category][value_type]();
+  if (decimal_places > 0) {
+    title_value = the_value.toFixed(decimal_places * 2);
+    the_value = the_value.toFixed(decimal_places);
+  } else {
+    title_value = null;
+  }
+  if (the_value !== current_value) {
+    if (effects) {
+      $(id).html(the_value).effect("highlight");
+    } else {
+      $(id).html(the_value);
+    }
+  }
+  if (title_value) {
+    return $(id).attr('title', title_value);
+  }
+};
+updateStatValues = function(sample_sets) {
+  var category, row, show_effects, _i, _len, _ref, _results;
+  show_effects = $(".tab-pane.active").attr("id") === "stats_tab";
+  _ref = ['samples_primary', 'samples_other', 'samples_all'];
+  _results = [];
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    category = _ref[_i];
+    _results.push((function() {
+      var _j, _len1, _results1;
+      _results1 = [];
+      for (_j = 0, _len1 = statTableRows.length; _j < _len1; _j++) {
+        row = statTableRows[_j];
+        _results1.push(changeStatsValue(sample_sets, category, row.vn, row.digits, show_effects));
+      }
+      return _results1;
+    })());
+  }
+  return _results;
+};
+
+updateHistogram_width = function() {
+  num_bins = $('#histogram').find('g.trace.bars').find('g.point').length
+
+  if (num_bins < 10) {
+    width_update = {
+      width: 400
+    }
+
+    Plotly.relayout('histogram', width_update)
+  }
+}
+
+updateHistogram = function() {
+  var x;
+  var _i, _len, _ref, data;
+  _ref = _.values(root.selected_samples[root.stats_group]);
+  var trait_vals = [];
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    x = _ref[_i];
+    trait_vals.push(x.value);
+  }
+  root.histogram_data[0]['x'] = trait_vals
+
+  if ($('input[name="transform"]').val() != ""){
+    root.histogram_layout['xaxis']['title'] = "<b>" + js_data.unit_type +  " (" + $('input[name="transform"]').val() + ")</b>"
+  } else {
+    root.histogram_layout['xaxis']['title'] = "<b>" + js_data.unit_type + "</b>"
+  }
+
+  Plotly.newPlot('histogram', root.histogram_data, root.histogram_layout, root.modebar_options);
+  updateHistogram_width()
+};
+
+updateBarChart = function() {
+  var x;
+  var _i, _len, _ref, data;
+  _ref = _.values(root.selected_samples[root.stats_group]);
+  names_and_values = []
+  for (i = 0; i < _ref.length; i++){
+      _ref[i]["name"] = Object.keys(root.selected_samples[root.stats_group])[i]
+  }
+  trait_vals = [];
+  trait_vars = [];
+  trait_samples = [];
+
+  function sortFunction(a, b) {
+    if (a.value === b.value) {
+      return 0;
+    }
+    else {
+      return (a.value < b.value) ? -1 : 1;
+    }
+  }
+
+  if (root.bar_sort == "value") {
+    _ref.sort(sortFunction)
+  }
+
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    x = _ref[_i];
+    trait_samples.push(x.name)
+    trait_vals.push(x.value);
+    if (x["variance"] != undefined) {
+      trait_vars.push(x.variance);
+    } else{
+      trait_vars.push(null)
+    }
+  }
+
+  new_chart_range = getBarRange(trait_vals, trait_vars)
+
+  root.bar_layout['yaxis']['range'] = new_chart_range
+
+  if ($('input[name="transform"]').val() != ""){
+    root.bar_layout['yaxis']['title'] = "<b>" + js_data.unit_type +  " (" + $('input[name="transform"]').val() + ")</b>"
+  } else {
+    root.bar_layout['yaxis']['title'] = "<b>" + js_data.unit_type + "</b>"
+  }
+
+  root.bar_data[0]['y'] = trait_vals
+  root.bar_data[0]['error_y'] = {
+    type: 'data',
+    array: trait_vars,
+    visible: root.errors_exist
+  }
+  root.bar_data[0]['x'] = trait_samples
+
+  if (trait_vals.length < 256) {
+    Plotly.newPlot('bar_chart', root.bar_data, root.bar_layout, root.modebar_options);
+  }
+};
+
+updateViolinPlot = function() {
+  var y_value_list = []
+  if (sampleLists.length > 1) {
+    i = 0;
+    for (var sample_group in root.selected_samples){
+      var trait_sample_data = _.values(root.selected_samples[sample_group])
+      var trait_vals = [];
+      for (j = 0, len = trait_sample_data.length; j < len; j++) {
+        this_sample_data = trait_sample_data[j];
+        trait_vals.push(this_sample_data.value);
+      }
+      root.violin_data[i]['y'] = trait_vals
+      i++;
+    }
+  } else {
+    var trait_sample_data = _.values(root.selected_samples['samples_all'])
+    var trait_vals = [];
+    for (j = 0, len = trait_sample_data.length; j < len; j++) {
+      this_sample_data = trait_sample_data[j];
+      trait_vals.push(this_sample_data.value);
+    }
+    root.violin_data[0]['y'] = trait_vals
+  }
+
+  if ($('input[name="transform"]').val() != ""){
+    root.violin_layout['yaxis']['title'] = "<b>" + js_data.unit_type +  " (" + $('input[name="transform"]').val() + ")</b>"
+  } else {
+    root.violin_layout['yaxis']['title'] = "<b>" + js_data.unit_type + "</b>"
+  }
+
+  Plotly.newPlot('violin_plot', root.violin_data, root.violin_layout, root.modebar_options)
+}
+
+
+updateProbPlot = function() {
+  return root.redraw_prob_plot_impl(root.selected_samples, root.prob_plot_group);
+};
+
+makeTable = function() {
+  var header, key, row, row_line, table, the_id, the_rows, value, _i, _len, _ref, _ref1;
+  if (js_data.trait_symbol != null) {
+    header = "<thead><tr><th style=\"color: white; background-color: #369; text-align: center;\" colspan=\"100%\">Trait " + js_data.trait_id + " - " + js_data.trait_symbol + "</th></tr><tr><th style=\"text-align: right; padding-left: 5px;\">Statistic</th>";
+  } else if (js_data.dataset_type == "Geno"){
+    header = "<thead><tr><th style=\"color: white; background-color: #369; text-align: center;\" colspan=\"100%\">Marker " + js_data.trait_id + "</th></tr><tr><th style=\"text-align: right; padding-left: 5px;\">Statistic</th>";
+  } else {
+    header = "<thead><tr><th style=\"color: white; background-color: #369; text-align: center;\" colspan=\"100%\">Trait " + js_data.trait_id + ": " + js_data.short_description + "</th></tr><tr><th style=\"text-align: right; padding-left: 5px;\">Statistic</th>";
+  }
+  _ref = js_data.sample_group_types;
+  for (key in _ref) {
+    if (!__hasProp.call(_ref, key)) continue;
+    value = _ref[key];
+    the_id = processId("column", key);
+    if (Object.keys(_ref).length > 1) {
+        header += "<th id=\"" + the_id + "\" style=\"text-align: right; padding-left: 5px;\">" + value + "</th>";
+    } else {
+        header += "<th id=\"" + the_id + "\" style=\"text-align: right; padding-left: 5px;\">Value</th>";
+    }
+  }
+
+  header += "</thead>";
+  the_rows = "<tbody>";
+  for (_i = 0, _len = statTableRows.length; _i < _len; _i++) {
+    row = statTableRows[_i];
+    if ((row.vn == "range_fold") && js_data.dataset_type == "Publish"){
+        continue;
+    }
+    row_line = "<tr>";
+    if (row.url != null) {
+      row_line += "<td id=\"" + row.vn + "\" align=\"right\"><a href=\"" + row.url + "\" style=\"color: #0000EE;\">" + row.pretty + "</a></td>";
+    } else {
+      row_line += "<td id=\"" + row.vn + "\" align=\"right\">" + row.pretty + "</td>";
+    }
+    _ref1 = js_data.sample_group_types;
+    for (key in _ref1) {
+      if (!__hasProp.call(_ref1, key)) continue;
+      value = _ref1[key];
+      the_id = processId(key, row.vn);
+      row_line += "<td id=\"" + the_id + "\" align=\"right\">N/A</td>";
+    }
+    row_line += "</tr>";
+    the_rows += row_line;
+  }
+  the_rows += "</tbody>";
+  table = header + the_rows;
+  return $("#stats_table").append(table);
+};
+processId = function() {
+  var processed, value, values, _i, _len;
+  values = 1 <= arguments.length ? __slice.call(arguments, 0) : [];
+
+  /* Make an id or a class valid javascript by, for example, eliminating spaces */
+  processed = "";
+  for (_i = 0, _len = values.length; _i < _len; _i++) {
+    value = values[_i];
+    value = value.replace(" ", "_");
+    if (processed.length) {
+      processed += "-";
+    }
+    processed += value;
+  }
+  return processed;
+};
+
+fetchSampleValues = function() {
+  // This is meant to fetch all sample values using DataTables API, since they can't all be submitted with the form when using Scroller (and this should also be faster)
+  sample_val_dict = {};
+
+  table = 'samples_primary';
+  if ($('#' + table).length){
+    tableApi = $('#' + table).DataTable();
+    val_nodes = tableApi.column(3).nodes().to$();
+    for (_j = 0; _j < val_nodes.length; _j++){
+      sample_name = val_nodes[_j].childNodes[0].name.split(":")[1]
+      sample_val = val_nodes[_j].childNodes[0].value
+      sample_val_dict[sample_name] = sample_val
+    }
+  }
+
+  return sample_val_dict;
+}
+
+editDataChange = function() {
+  var already_seen, sample_sets, table, tables, _i, _j, _len;
+  already_seen = {};
+  sample_sets = {
+    samples_primary: new Stats([]),
+    samples_other: new Stats([]),
+    samples_all: new Stats([])
+  };
+  root.selected_samples = {
+    samples_primary: {},
+    samples_other: {},
+    samples_all: {}
+  };
+
+  tables = ['samples_primary', 'samples_other'];
+  for (_i = 0, _len = tables.length; _i < _len; _i++) {
+    table = tables[_i];
+    if ($('#' + table).length){
+      tableApi = $('#' + table).DataTable();
+      sample_vals = [];
+      name_nodes = tableApi.column(2).nodes().to$();
+      val_nodes = tableApi.column(3).nodes().to$();
+      var_nodes = tableApi.column(5).nodes().to$();
+      for (_j = 0; _j < val_nodes.length; _j++){
+        sample_val = val_nodes[_j].childNodes[0].value
+        sample_name = $.trim(name_nodes[_j].childNodes[0].textContent)
+        if (isNumber(sample_val) && sample_val !== "") {
+          sample_val = parseFloat(sample_val);
+          sample_sets[table].add_value(sample_val);
+          try {
+            sample_var = var_nodes[_j].childNodes[0].value
+            if (isNumber(sample_var)) {
+              sample_var = parseFloat(sample_var)
+            } else {
+              sample_var = null;
+            }
+          } catch {
+            sample_var = null;
+          }
+          sample_dict = {
+            value: sample_val,
+            variance: sample_var
+          }
+          root.selected_samples[table][sample_name] = sample_dict;
+          if (!(sample_name in already_seen)) {
+            sample_sets['samples_all'].add_value(sample_val);
+            root.selected_samples['samples_all'][sample_name] = sample_dict;
+            already_seen[sample_name] = true;
+          }
+        }
+      }
+    }
+
+  }
+
+  updateStatValues(sample_sets);
+
+  if ($('#histogram').hasClass('js-plotly-plot')){
+    updateHistogram();
+  }
+  if ($('#bar_chart').hasClass('js-plotly-plot')){
+    updateBarChart();
+  }
+  if ($('#violin_plot').hasClass('js-plotly-plot')){
+    updateViolinPlot();
+  }
+  if ($('#prob_plot_div').hasClass('js-plotly-plot')){
+    return updateProbPlot();
+  }
+};
+
+showHideOutliers = function() {
+  var label;
+  label = $('#showHideOutliers').val();
+  if (label === "Hide Outliers") {
+    return $('#showHideOutliers').val("Show Outliers");
+  } else if (label === "Show Outliers") {
+    $('#showHideOutliers').val("Hide Outliers");
+    return console.log("Should be now Hide Outliers");
+  }
+};
+
+onCorrMethodChange = function() {
+  var corr_method;
+  corr_method = $('select[name=corr_type]').val();
+  $('.correlation_desc').hide();
+  $('#' + corr_method + "_r_desc").show().effect("highlight");
+  if (corr_method === "lit") {
+    return $("#corr_sample_method").hide();
+  } else {
+    return $("#corr_sample_method").show();
+  }
+};
+$('select[name=corr_type]').change(onCorrMethodChange);
+
+on_dataset_change = function() {
+  let dataset_type = $('select[name=corr_dataset] option:selected').data('type');
+  let location_type = $('select[name=location_type] option:selected').val();
+
+  if (dataset_type == "mrna_assay"){
+    $('#min_expr_filter').show();
+    $('select[name=location_type] option:disabled').prop('disabled', false)
+  }
+  else if (dataset_type == "pheno"){
+    $('#min_expr_filter').show();
+    $('select[name=location_type]>option:eq(0)').prop('disabled', true).attr('selected', false);
+    $('select[name=location_type]>option:eq(1)').prop('disabled', false).attr('selected', true);
+  }
+  else {
+    $('#min_expr_filter').hide();
+    $('select[name=location_type]>option:eq(0)').prop('disabled', false).attr('selected', true);
+    $('select[name=location_type]>option:eq(1)').prop('disabled', true).attr('selected', false);
+  }
+}
+
+$('select[name=corr_dataset]').change(on_dataset_change);
+$('select[name=location_type]').change(on_dataset_change);
+
+submit_special = function(url) {
+  $("input[name=sample_vals]").val(JSON.stringify(fetchSampleValues()))
+  $("#trait_data_form").attr("action", url);
+
+  $("#trait_data_form").submit();
+};
+
+var corrInputList = ['sample_vals', 'corr_type', 'primary_samples', 'trait_id', 'dataset', 'group', 'tool_used', 'form_url', 'corr_sample_method', 'corr_samples_group', 'corr_dataset', 'min_expr',
+                        'corr_return_results', 'location_type', 'loc_chr', 'min_loc_mb', 'max_loc_mb', 'p_range_lower', 'p_range_upper',"use_cache"]
+
+$(".test_corr_compute").on("click", (function(_this) {
+  return function() {
+    $('input[name=tool_used]').val("Correlation");
+    $('input[name=form_url]').val("/test_corr_compute");
+    $('input[name=wanted_inputs]').val(corrInputList.join(","));
+    
+
+    url = "/loading";
+    return submit_special(url);
+  };
+})(this));
+
+$(".corr_compute").on("click", (function(_this) {
+
+    return function() {
+
+
+    $('input[name=tool_used]').val("Correlation");
+    $('input[name=form_url]').val("/corr_compute");
+    $('input[name=wanted_inputs]').val(corrInputList.join(","));
+
+
+    $('input[name=use_cache]').val($('#use_cache').is(":checked") ? "true": "false");
+
+    url = "/loading";
+    return submit_special(url);
+  };
+})(this));
+
+createValueDropdown = function(value) {
+  return "<option val=" + value + ">" + value + "</option>";
+};
+
+populateSampleAttributesValuesDropdown = function() {
+  var attribute_info, key, sample_attributes, selected_attribute, value, _i, _len, _ref, _ref1, _results;
+  $('#attribute_values').empty();
+  sample_attributes = [];
+
+  var attributesAsList = Object.keys(js_data.attributes).map(function(key) {
+    return [key, js_data.attributes[key].id];
+  });
+
+  attributesAsList.sort(function(first, second) {
+    if (second[1] > first[1]){
+      return -1
+    }
+    if (first[1] > second[1]){
+      return 1
+    }
+    return 0
+  });
+
+  for (i=0; i < attributesAsList.length; i++) {
+    attribute_info = js_data.attributes[attributesAsList[i][1]]
+    sample_attributes.push(attribute_info.distinct_values);
+  }
+
+  selected_attribute = $('#exclude_column').val()
+  _ref1 = sample_attributes[selected_attribute - 1];
+  _results = [];
+  for (_i = 0, _len = _ref1.length; _i < _len; _i++) {
+    value = _ref1[_i];
+    if (value != ""){
+      _results.push($(createValueDropdown(value)).appendTo($('#attribute_values')));
+    }
+  }
+  return _results;
+};
+
+if (js_data.categorical_attr_exists == "true"){
+  populateSampleAttributesValuesDropdown();
+}
+
+$('#exclude_column').change(populateSampleAttributesValuesDropdown);
+blockByAttributeValue = function() {
+  var attribute_name, cell_class, exclude_by_value;
+
+  let exclude_group = $('#exclude_by_attr_group').val();
+  let exclude_column = $('#exclude_column').val();
+
+  if (exclude_group === "other") {
+    var tableApi = $('#samples_other').DataTable();
+  } else {
+    var tableApi = $('#samples_primary').DataTable();
+  }
+
+  exclude_by_value = $('#attribute_values').val();
+
+  let val_nodes = tableApi.column(3).nodes().to$();
+  let exclude_val_nodes = tableApi.column(attributeStartPos + parseInt(exclude_column)).nodes().to$();
+
+  for (i = 0; i < exclude_val_nodes.length; i++) {
+    if (exclude_val_nodes[i].hasChildNodes()) {
+      let this_col_value = exclude_val_nodes[i].childNodes[0].data;
+      let this_val_node = val_nodes[i].childNodes[0];
+
+      if (this_col_value == exclude_by_value){
+        this_val_node.value = "x";
+      }
+    }
+  }
+
+  editDataChange();
+};
+$('#exclude_by_attr').click(blockByAttributeValue);
+
+blockByIndex = function() {
+  var end_index, error, index, index_list, index_set, index_string, start_index, _i, _j, _k, _len, _len1, _ref;
+  index_string = $('#remove_samples_field').val();
+  index_list = [];
+  _ref = index_string.split(",");
+  for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+    index_set = _ref[_i];
+    if (index_set.indexOf('-') !== -1) {
+      try {
+        start_index = parseInt(index_set.split("-")[0]);
+        end_index = parseInt(index_set.split("-")[1]);
+        for (index = _j = start_index; start_index <= end_index ? _j <= end_index : _j >= end_index; index = start_index <= end_index ? ++_j : --_j) {
+          index_list.push(index);
+        }
+      } catch (_error) {
+        error = _error;
+        alert("Syntax error");
+      }
+    } else {
+      index = parseInt(index_set);
+      index_list.push(index);
+    }
+  }
+
+  let block_group = $('#block_group').val();
+  if (block_group === "other") {
+    tableApi = $('#samples_other').DataTable();
+  } else {
+    tableApi = $('#samples_primary').DataTable();
+  }
+  val_nodes = tableApi.column(3).nodes().to$();
+  for (_k = 0, _len1 = index_list.length; _k < _len1; _k++) {
+    index = index_list[_k];
+    val_nodes[index - 1].childNodes[0].value = "x";
+  }
+};
+
+filter_by_study = function() {
+  let this_study = $('#filter_study').val();
+
+  let study_sample_data = JSON.parse($('input[name=study_samplelists]').val())
+  let filter_samples = study_sample_data[parseInt(this_study)]['samples']
+
+  if ($('#filter_study_group').length){
+    let block_group = $('#filter_study_group').val();
+    if (block_group === "other") {
+      tableApi = $('#samples_other').DataTable();
+    } else {
+      tableApi = $('#samples_primary').DataTable();
+    }
+  }
+
+  let sample_nodes = tableApi.column(2).nodes().to$();
+  let val_nodes = tableApi.column(3).nodes().to$();
+  for (i = 0; i < sample_nodes.length; i++) {
+    this_sample = sample_nodes[i].childNodes[0].innerText;
+    if (!filter_samples.includes(this_sample)){
+      val_nodes[i].childNodes[0].value = "x";
+    }
+  }
+}
+
+filter_by_value = function() {
+  let filter_logic = $('#filter_logic').val();
+  let filter_column = $('#filter_column').val();
+  let filter_value = $('#filter_value').val();
+  let block_group = $('#filter_group').val();
+
+  if (block_group === "other") {
+    var tableApi = $('#samples_other').DataTable();
+  } else {
+    var tableApi = $('#samples_primary').DataTable();
+  }
+
+  let val_nodes = tableApi.column(3).nodes().to$();
+  if (filter_column == "value"){
+    var filter_val_nodes = tableApi.column(3).nodes().to$();
+  }
+  else if (filter_column == "stderr"){
+    var filter_val_nodes = tableApi.column(5).nodes().to$();
+  }
+  else if (!isNaN(filter_column)){
+    var filter_val_nodes = tableApi.column(attributeStartPos + parseInt(filter_column)).nodes().to$();
+  }
+  else {
+    return false
+  }
+
+  for (i = 0; i < filter_val_nodes.length; i++) {
+    if (filter_column == "value" || filter_column == "stderr"){
+      var this_col_value = filter_val_nodes[i].childNodes[0].value;
+    } else {
+      if (filter_val_nodes[i].childNodes[0] !== undefined){
+        var this_col_value = filter_val_nodes[i].innerText;
+      } else {
+        continue
+      }
+    }
+    let this_val_node = val_nodes[i].childNodes[0];
+
+    if(!isNaN(this_col_value) && !isNaN(filter_value)) {
+      if (filter_logic == "greater_than"){
+        if (parseFloat(this_col_value) <= parseFloat(filter_value)){
+          this_val_node.value = "x";
+        }
+      }
+      else if (filter_logic == "less_than"){
+        if (parseFloat(this_col_value) >= parseFloat(filter_value)){
+          this_val_node.value = "x";
+        }
+      }
+      else if (filter_logic == "greater_or_equal"){
+        if (parseFloat(this_col_value) < parseFloat(filter_value)){
+          this_val_node.value = "x";
+        }
+      }
+      else if (filter_logic == "less_or_equal"){
+        if (parseFloat(this_col_value) > parseFloat(filter_value)){
+          this_val_node.value = "x";
+        }
+      }
+    }
+  }
+};
+
+hideNoValue_filter = function( settings, data, dataIndex ) {
+  this_value = tableApi.column(3).nodes().to$()[dataIndex].childNodes[0].value;
+  if (this_value == "x"){
+    return false
+  } else {
+    return true
+  }
+}
+
+hideNoValue = function() {
+  tables = ['samples_primary', 'samples_other'];
+  filter_active = $(this).data("active");
+  for (_i = 0, _len = tables.length; _i < _len; _i++) {
+    table = tables[_i];
+    if ($('#' + table).length) {
+      tableApi = $('#' + table).DataTable();
+      if (filter_active == "true"){
+        $(this).val("Hide No Value")
+        tableApi.draw();
+        $(this).data("active", "false");
+      } else {
+        $(this).val("Show No Value")
+        $.fn.dataTable.ext.search.push(hideNoValue_filter);
+        tableApi.search();
+        tableApi.draw();
+        $.fn.dataTable.ext.search.splice($.fn.dataTable.ext.search.indexOf(hideNoValue_filter, 1));
+        $(this).data("active", "true");
+      }
+    }
+  }
+};
+$('#hideNoValue').click(hideNoValue);
+
+blockOutliers = function() {
+  return $('.outlier').each((function(_this) {
+    return function(_index, element) {
+      return $(element).find('.trait-value-input').val('x');
+    };
+  })(this));
+};
+$('#blockOutliers').click(blockOutliers);
+
+resetSamplesTable = function() {
+  $('input[name="transform"]').val("");
+  $('span[name="transform_text"]').text("")
+  $('#hideNoValue').val("Hide No Value")
+  tables = ['samples_primary', 'samples_other'];
+  for (_i = 0, _len = tables.length; _i < _len; _i++) {
+    table = tables[_i];
+    if ($('#' + table).length) {
+      tableApi = $('#' + table).DataTable();
+      val_nodes = tableApi.column(3).nodes().to$();
+      for (i = 0; i < val_nodes.length; i++) {
+        this_node = val_nodes[i].childNodes[0];
+        this_node.value = this_node.attributes["data-value"].value;
+      }
+      if (js_data.se_exists){
+        se_nodes = tableApi.column(5).nodes().to$();
+        for (i = 0; i < val_nodes.length; i++) {
+          this_node = val_nodes[i].childNodes[0];
+          this_node.value = this_node.attributes["data-value"].value;
+        }
+      }
+      tableApi.draw();
+    }
+  }
+};
+$('.reset').click(function() {
+  $('.selected').each(function() {
+    $(this).removeClass('selected');
+    $(this).find('.edit_sample_checkbox').prop("checked", false);
+  })
+  resetSamplesTable();
+  $('input[name="transform"]').val("");
+  editDataChange();
+});
+
+checkForZeroToOneVals = function() {
+  tables = ['samples_primary', 'samples_other'];
+  for (_i = 0, _len = tables.length; _i < _len; _i++) {
+    table = tables[_i];
+    if ($('#' + table).length) {
+      tableApi = $('#' + table).DataTable();
+      val_nodes = tableApi.column(3).nodes().to$();
+      for (i = 0; i < val_nodes.length; i++) {
+        this_node = val_nodes[i].childNodes[0];
+        if(!isNaN(this_node.value)) {
+          if (0 <= this_node.value && this_node.value < 1){
+            return true
+          }
+        }
+      }
+    }
+  }
+  return false
+}
+
+log2Data = function(this_node) {
+  current_value = this_node.value;
+  original_value = this_node.attributes['data-value'].value;
+  if(!isNaN(current_value) && !isNaN(original_value)) {
+    if (zeroToOneValsExist){
+      original_value = parseFloat(original_value) + 1;
+    }
+    this_node.value = Math.log2(original_value).toFixed(3);
+  }
+};
+
+log10Data = function() {
+  current_value = this_node.value;
+  original_value = this_node.attributes['data-value'].value;
+  if(!isNaN(current_value) && !isNaN(original_value)) {
+    if (zeroToOneValsExist){
+      original_value = parseFloat(original_value) + 1;
+    }
+    this_node.value = Math.log10(original_value).toFixed(3);
+  }
+};
+
+sqrtData = function() {
+  current_value = this_node.value;
+  original_value = this_node.attributes['data-value'].value;
+  if(!isNaN(current_value) && !isNaN(original_value)) {
+    if (zeroToOneValsExist){
+      original_value = parseFloat(original_value) + 1;
+    }
+    this_node.value = Math.sqrt(original_value).toFixed(3);
+  }
+};
+
+invertData = function() {
+  current_value = this_node.value;
+  if(!isNaN(current_value)) {
+    this_node.value = parseFloat(-(current_value)).toFixed(3);
+  }
+};
+
+qnormData = function() {
+  current_value = this_node.value;
+  qnorm_value = this_node.attributes['data-qnorm'].value;
+  if(!isNaN(current_value)) {
+    this_node.value = qnorm_value;
+  }
+};
+
+zScoreData = function() {
+  current_value = this_node.value;
+  zscore_value = this_node.attributes['data-zscore'].value;
+  if(!isNaN(current_value)) {
+    this_node.value = zscore_value;
+  }
+};
+
+doTransform = function(transform_type) {
+  tables = ['samples_primary', 'samples_other'];
+  for (_i = 0, _len = tables.length; _i < _len; _i++) {
+    table = tables[_i];
+    if ($('#' + table).length) {
+      tableApi = $('#' + table).DataTable();
+      val_nodes = tableApi.column(3).nodes().to$();
+      for (i = 0; i < val_nodes.length; i++) {
+        this_node = val_nodes[i].childNodes[0]
+        if (transform_type == "log2"){
+          log2Data(this_node)
+        }
+        if (transform_type == "log10"){
+          log10Data(this_node)
+        }
+        if (transform_type == "sqrt"){
+          sqrtData(this_node)
+        }
+        if (transform_type == "invert"){
+          invertData(this_node)
+        }
+        if (transform_type == "qnorm"){
+          qnormData(this_node)
+        }
+        if (transform_type == "zscore"){
+          zScoreData(this_node)
+        }
+      }
+    }
+  }
+}
+
+normalizeData = function() {
+  if ($('#norm_method option:selected').val() == 'log2' || $('#norm_method option:selected').val() == 'log10'){
+    if ($('input[name="transform"]').val() != "log2" && $('#norm_method option:selected').val() == 'log2') {
+      doTransform("log2")
+      $('input[name="transform"]').val("log2")
+      $('span[name="transform_text"]').text(" - log2 Transformed")
+    } else {
+      if ($('input[name="transform"]').val() != "log10" && $('#norm_method option:selected').val() == 'log10'){
+        doTransform("log10")
+        $('input[name="transform"]').val("log10")
+        $('span[name="transform_text"]').text(" - log10 Transformed")
+      }
+    }
+  }
+  else if ($('#norm_method option:selected').val() == 'sqrt'){
+    if ($('input[name="transform"]').val() != "sqrt") {
+      doTransform("sqrt")
+      $('input[name="transform"]').val("sqrt")
+      $('span[name="transform_text"]').text(" - Square Root Transformed")
+    }
+  }
+  else if ($('#norm_method option:selected').val() == 'invert'){
+    doTransform("invert")
+    $('input[name="transform"]').val("inverted")
+    if ($('span[name="transform_text"]:eq(0)').text() != ""){
+      current_text = $('span[name="transform_text"]:eq(0)').text();
+      $('span[name="transform_text"]').text(current_text + " and Inverted");
+    } else {
+      $('span[name="transform_text"]').text(" - Inverted")
+    }
+  }
+  else if ($('#norm_method option:selected').val() == 'qnorm'){
+    if ($('input[name="transform"]').val() != "qnorm") {
+      doTransform("qnorm")
+      $('input[name="transform"]').val("qnorm")
+      $('span[name="transform_text"]').text(" - Quantile Normalized")
+    }
+  }
+  else if ($('#norm_method option:selected').val() == 'zscore'){
+    if ($('input[name="transform"]').val() != "zscore") {
+      doTransform("zscore")
+      $('input[name="transform"]').val("zscore")
+      $('span[name="transform_text"]').text(" - Z-Scores")
+    }
+  }
+}
+
+zeroToOneValsExist = checkForZeroToOneVals();
+
+showTransformWarning = function() {
+  transform_type = $('#norm_method option:selected').val()
+  if (transform_type == "log2" || transform_type == "log10"){
+    if (zeroToOneValsExist){
+      $('#transform_alert').css("display", "block")
+    }
+  } else {
+    $('#transform_alert').css("display", "none")
+  }
+}
+
+$('#norm_method').change(function(){
+  showTransformWarning()
+});
+$('#normalize').hover(function(){
+  showTransformWarning()
+});
+
+$('#normalize').click(normalizeData)
+
+switchQNormData = function() {
+  return $('.trait-value-input').each((function(_this) {
+    return function(_index, element) {
+      transform_val = $(element).data('transform')
+      if (transform_val != "") {
+          $(element).val(transform_val.toFixed(3));
+      }
+      return transform_val
+    };
+  })(this));
+};
+$('#qnorm').click(switchQNormData);
+
+getSampleTableData = function(tableName, attributesAsList, includeNAs=false) {
+  var samples = [];
+
+  if ($('#' + tableName).length){
+    tableApi = $('#' + tableName).DataTable();
+    attrCol = 4
+
+    nameNodes = tableApi.column(2).nodes().to$();
+    valNodes = tableApi.column(3).nodes().to$();
+    if (js_data.se_exists){
+      varNodes = tableApi.column(5).nodes().to$();
+      attrCol = 6
+      if (js_data.has_num_cases) {
+        nNodes = tableApi.column(6).nodes().to$();
+        attrCol = 7
+      }
+    } else {
+      if (js_data.has_num_cases){
+        nNodes = tableApi.column(4).nodes().to$();
+        attrCol = 5
+      }
+    }
+
+    attributeNodes = []
+    for (_i = 0; _i < attributesAsList.length; _i++){
+      attributeNodes.push(tableApi.column(attrCol + _i).nodes().to$())
+    }
+
+    checkedRows = getCheckedRows(tableName)
+
+    for (_j = 0; _j < valNodes.length; _j++){
+      if (!checkedRows.includes(_j) && checkedRows.length > 0) {
+        continue
+      }
+      sampleVal = valNodes[_j].childNodes[0].value
+      sampleName = $.trim(nameNodes[_j].childNodes[0].textContent)
+      if (isNumber(sampleVal) && sampleVal !== "") {
+        sampleVal = parseFloat(sampleVal);
+      } else {
+        sampleVal = 'x'
+      }
+      if (typeof varNodes == 'undefined'){
+        sampleVar = null;
+      } else {
+        sampleVar = varNodes[_j].childNodes[0].value;
+        if (isNumber(sampleVar)) {
+          sampleVar = parseFloat(sampleVar);
+        } else {
+          sampleVar = 'x';
+        }
+      }
+      if (typeof nNodes == 'undefined'){
+        sampleN = null;
+      } else {
+        sampleN = nNodes[_j].childNodes[0].value;
+        if (isNumber(sampleN)) {
+          sampleN = parseInt(sampleN);
+        } else {
+          sampleN = 'x';
+        }
+      }
+
+      rowDict = {
+        name: sampleName,
+        value: sampleVal,
+        se: sampleVar,
+        num_cases: sampleN
+      }
+
+      for (_k = 0; _k < attributeNodes.length; _k++){
+        rowDict[attributesAsList[_k]] = attributeNodes[_k][_j].textContent;
+      }
+      if (includeNAs || sampleVal != 'x') {
+        samples.push(rowDict)
+      }
+    }
+  }
+
+  return samples;
+};
+exportSampleTableData = function() {
+  var format, json_sample_data, sample_data;
+
+  var attributesAsList = Object.keys(js_data.attributes).map(function(key) {
+    return js_data.attributes[key].name;
+  });
+
+  sample_data = {};
+  sample_data.primary_samples = getSampleTableData('samples_primary', attributesAsList, true);
+  sample_data.other_samples = getSampleTableData('samples_other', attributesAsList, true);
+  sample_data.attributes = attributesAsList;
+  json_sample_data = JSON.stringify(sample_data);
+  $('input[name=export_data]').val(json_sample_data);
+  format = $('input[name=export_format]').val();
+  if (format === "excel") {
+    $('#trait_data_form').attr('action', '/export_trait_excel');
+  } else {
+    $('#trait_data_form').attr('action', '/export_trait_csv');
+  }
+  return $('#trait_data_form').submit();
+};
+
+$('.export_format').change(function() {
+  if (this.value  == "csv"){
+    $('#export_code').css("display", "block")
+  } else{
+    $('#export_code').css("display", "none")
+  }
+  $('input[name=export_format]').val( this.value );
+  $('.export_format').val( this.value );
+});
+
+$('.export').click(exportSampleTableData);
+$('#blockOutliers').click(blockOutliers);
+_.mixin(_.str.exports());
+
+getSampleVals = function(sample_list) {
+  var sample;
+  return this.sample_vals = (function() {
+    var i, len, results;
+    results = [];
+    for (i = 0, len = sample_list.length; i < len; i++) {
+      sample = sample_list[i];
+      if (sample.value !== null) {
+        results.push(sample.value);
+      }
+    }
+    return results;
+  })();
+};
+
+getSampleErrors = function(sample_list) {
+  var sample;
+  return this.sample_vals = (function() {
+    var i, len, results;
+    variance_exists = false;
+    results = [];
+    for (i = 0, len = sample_list.length; i < len; i++) {
+      sample = sample_list[i];
+      if (sample.variance !== null) {
+        results.push(sample.variance);
+        variance_exists = true;
+      }
+    }
+    return [results, variance_exists];
+  })();
+};
+
+getSampleNames = function(sample_list) {
+  var sample;
+  return this.sampleNames = (function() {
+    var i, len, results;
+    results = [];
+    for (i = 0, len = sample_list.length; i < len; i++) {
+      sample = sample_list[i];
+      if (sample.value !== null) {
+        results.push(sample.name);
+      }
+    }
+    return results;
+  })();
+};
+
+getBarBottomMargin = function(sample_list){
+  bottomMargin = 80
+  maxLength = 0
+  sampleNames = getSampleNames(sample_list)
+  for (i=0; i < sampleNames.length; i++){
+    if (sampleNames[i].length > maxLength) {
+      maxLength = sampleNames[i].length
+    }
+  }
+
+  if (maxLength > 6){
+    bottomMargin += 11*(maxLength - 6)
+  }
+
+  return bottomMargin;
+}
+
+root.stats_group = 'samples_primary';
+
+if (Object.keys(js_data.sample_group_types).length > 1) {
+    fullSampleLists = [sampleLists[0], sampleLists[1], sampleLists[0].concat(sampleLists[1])]
+    sampleGroupList = [js_data.sample_group_types['samples_primary'], js_data.sample_group_types['samples_other'], js_data.sample_group_types['samples_all']]
+} else {
+    fullSampleLists = [sampleLists[0]]
+    sampleGroupList = [js_data.sample_group_types['samples_primary']]
+}
+
+// Define Plotly Options (for the options bar at the top of each figure)
+
+root.modebar_options = {
+  displayModeBar: true,
+  modeBarButtonsToAdd:[{
+    name: 'Export as SVG',
+    icon: Plotly.Icons.disk,
+    click: function(gd) {
+      Plotly.downloadImage(gd, {format: 'svg'})
+    }
+  },
+  {
+    name: 'Export as JPEG',
+    icon: Plotly.Icons.camera,
+    click: function(gd) {
+      Plotly.downloadImage(gd, {format: 'jpeg'})
+    }
+  }],
+  showEditInChartStudio: true,
+  plotlyServerURL: "https://chart-studio.plotly.com",
+  modeBarButtonsToRemove:['zoom2d', 'pan2d', 'toImage', 'hoverClosest', 'hoverCompare', 'hoverClosestCartesian', 'hoverCompareCartesian', 'lasso2d', 'toggleSpikelines', 'resetScale2d'],
+  displaylogo: false
+  //modeBarButtons:['toImage2', 'zoom2d', 'pan2d', 'select2d', 'zoomIn2d', 'zoomOut2d', 'autoScale2d', 'resetScale2d'],
+}
+
+// Bar Chart
+
+root.errors_exist = getSampleErrors(sampleLists[0])[1]
+var barTrace = {
+    x: getSampleNames(sampleLists[0]),
+    y: getSampleVals(sampleLists[0]),
+    error_y: {
+        type: 'data',
+        array: getSampleErrors(sampleLists[0])[0],
+        visible: root.errors_exist
+    },
+    type: 'bar'
+}
+
+root.bar_data = [barTrace]
+
+getBarRange = function(sample_vals, sampleErrors = null){
+  positiveErrorVals = []
+  negativeErrorVals = []
+  for (i = 0;i < sample_vals.length; i++){
+    if (sampleErrors[i] != undefined) {
+        positiveErrorVals.push(sample_vals[i] + sampleErrors[i])
+        negativeErrorVals.push(sample_vals[i] - sampleErrors[i])
+    } else {
+        positiveErrorVals.push(sample_vals[i])
+        negativeErrorVals.push(sample_vals[i])
+    }
+  }
+
+  minYVal = Math.min(...negativeErrorVals)
+  maxYVal = Math.max(...positiveErrorVals)
+
+  if (minYVal == 0) {
+    rangeTop = maxYVal + Math.abs(maxYVal)*0.1
+    rangeBottom = 0;
+  } else {
+    rangeTop = maxYVal + Math.abs(maxYVal)*0.1
+    rangeBottom = minYVal - Math.abs(minYVal)*0.1
+    if (minYVal > 0) {
+        rangeBottom = minYVal - 0.1*Math.abs(minYVal)
+    } else if (minYVal < 0) {
+        rangeBottom = minYVal + 0.1*minYVal
+    } else {
+        rangeBottom = 0
+    }
+  }
+
+  return [rangeBottom, rangeTop]
+}
+
+root.chart_range = getBarRange(getSampleVals(sampleLists[0]), getSampleErrors(sampleLists[0])[0])
+valRange = root.chart_range[1] - root.chart_range[0]
+
+if (valRange < 0.05){
+  tickDigits = '.3f'
+  leftMargin = 80
+} else if (valRange < 0.5) {
+  tickDigits = '.2f'
+  leftMargin = 70
+} else if (valRange < 5){
+  tickDigits = '.1f'
+  leftMargin = 60
+} else {
+  tickDigits = 'f'
+  leftMargin = 55
+}
+
+if (js_data.num_values < 256) {
+  barChartWidth = 25 * getSampleVals(sampleLists[0]).length
+
+  // Set bottom margin dependent on longest sample name length, since those can get long
+  bottomMargin = getBarBottomMargin(sampleLists[0])
+
+  root.bar_layout = {
+    title: {
+      x: 0,
+      y: 10,
+      xanchor: 'left',
+      text: "<b>Trait " + js_data.trait_id + ": " + js_data.short_description + "</b>",
+    },
+    xaxis: {
+        type: 'category',
+        titlefont: {
+          size: 16
+        },
+        showline: true,
+        ticklen: 4,
+        tickfont: {
+          size: 16
+        },
+    },
+    yaxis: {
+        title: "<b>" + js_data.unit_type + "</b>",
+        range: root.chart_range,
+        titlefont: {
+          size: 16
+        },
+        showline: true,
+        ticklen: 4,
+        tickfont: {
+          size: 16
+        },
+        tickformat: tickDigits,
+        fixedrange: true
+    },
+    width: barChartWidth,
+    height: 600,
+    margin: {
+        l: leftMargin,
+        r: 30,
+        t: 100,
+        b: bottomMargin
+    },
+    dragmode: false
+  };
+
+  $('.bar_chart_tab').click(function() {
+    updateBarChart();
+  });
+}
+
+total_sample_count = 0
+for (i = 0, i < sampleLists.length; i++;) {
+  total_sample_count += getSampleVals(sampleLists[i]).length
+}
+
+// Histogram
+var hist_trace = {
+    x: getSampleVals(sampleLists[0]),
+    type: 'histogram'
+};
+root.histogram_data = [hist_trace];
+root.histogram_layout = {
+  bargap: 0.05,
+  title: {
+    x: 0,
+    y: 10,
+    xanchor: 'left',
+    text: "<b> Trait " + js_data.trait_id + ": " + js_data.short_description + "</b>",
+  },
+  xaxis: {
+           autorange: true,
+           title: js_data.unit_type,
+           titlefont: {
+             family: "arial",
+             size: 16
+           },
+           ticklen: 4,
+           tickfont: {
+             size: 16
+           }
+         },
+  yaxis: {
+           autorange: true,
+           title: "<b>count</b>",
+           titlefont: {
+             family: "arial",
+             size: 16
+           },
+           showline: true,
+           ticklen: 4,
+           tickfont: {
+             size: 16
+           },
+           automargin: true,
+           fixedrange: true
+         },
+  width: 500,
+  height: 600,
+  margin: {
+      l: 100,
+      r: 30,
+      t: 100,
+      b: 50
+  }
+};
+
+$('.histogram_tab').click(function() {
+  updateHistogram();
+  updateHistogram_width();
+});
+
+$('.histogram_samples_group').val(root.stats_group);
+$('.histogram_samples_group').change(function() {
+  root.stats_group = $(this).val();
+  return updateHistogram();
+});
+
+// Violin Plot
+
+root.violin_layout = {
+  title: "<b>Trait " + js_data.trait_id + ": " + js_data.short_description + "</b>",
+  xaxis: {
+      showline: true,
+      titlefont: {
+        family: "arial",
+        size: 16
+      },
+      tickfont: {
+        family: "arial",
+        size: 16
+      }
+  },
+  yaxis: {
+      title: {
+        text: "<b>"+js_data.unit_type+"</b>"
+      },
+      titlefont: {
+        family: "arial",
+        size: 16
+      },
+      autorange: true,
+      showline: true,
+      ticklen: 4,
+      tickfont: {
+        size: 16
+      },
+      tickformat: tickDigits,
+      zeroline: false,
+      automargin: true
+  },
+  margin: {
+        l: 100,
+        r: 30,
+        t: 100,
+        b: 80
+  },
+  dragmode: false,
+  showlegend: false
+};
+
+if (fullSampleLists.length > 1) {
+    root.violin_layout['width'] = 600;
+    root.violin_layout['height'] = 500;
+    var trace1 = {
+        y: getSampleVals(fullSampleLists[2]),
+        type: 'violin',
+        points: 'none',
+        box: {
+          visible: true
+        },
+        line: {
+          color: 'blue',
+        },
+        meanline: {
+          visible: true
+        },
+        name: "<b>" + sampleGroupList[2] + "</b>",
+        x0: "<b>" + sampleGroupList[2] + "</b>"
+    }
+    var trace2 = {
+        y: getSampleVals(fullSampleLists[1]),
+        type: 'violin',
+        points: 'none',
+        box: {
+          visible: true
+        },
+        line: {
+          color: 'red',
+        },
+        meanline: {
+          visible: true
+        },
+        name: "<b>" + sampleGroupList[1] + "</b>",
+        x0: "<b>" + sampleGroupList[1] + "</b>"
+    }
+    var trace3 = {
+        y: getSampleVals(fullSampleLists[0]),
+        type: 'violin',
+        points: 'none',
+        box: {
+          visible: true
+        },
+        line: {
+          color: 'green',
+        },
+        meanline: {
+          visible: true
+        },
+        name: "<b>" + sampleGroupList[0] + "</b>",
+        x0: "<b>" + sampleGroupList[0] + "</b>"
+    }
+    root.violin_data = [trace1, trace2, trace3]
+} else {
+    root.violin_layout['width'] = 320;
+    root.violin_layout['height'] = 400;
+    root.violin_data = [
+      {
+        y: getSampleVals(fullSampleLists[0]),
+        type: 'violin',
+        points: 'none',
+        box: {
+          visible: true
+        },
+        meanline: {
+          visible: true
+        },
+        name: "<b>Trait " + js_data.trait_id + "</b>",
+        x0: "<b>density</b>"
+      }
+    ]
+}
+
+$('.violin_plot_tab').click(function() {
+  updateViolinPlot();
+});
+
+if (getSampleVals(sampleLists[0]).length < 256) {
+  $('.bar_chart_samples_group').change(function() {
+    root.stats_group = $(this).val();
+    return updateBarChart();
+  });
+  root.bar_sort = "name"
+}
+$('.sort_by_name').click(function() {
+  root.bar_sort = "name"
+  return updateBarChart();
+});
+$('.sort_by_value').click(function() {
+  root.bar_sort = "value"
+  return updateBarChart();
+});
+
+root.prob_plot_group = 'samples_primary';
+$('.prob_plot_samples_group').val(root.prob_plot_group);
+$('.prob_plot_tab').click(function() {
+  return updateProbPlot();
+});
+$('.prob_plot_samples_group').change(function() {
+  root.prob_plot_group = $(this).val();
+  return updateProbPlot();
+});
+
+function isEmpty( el ){
+  return !$.trim(el.html())
+}
+
+$('.stats_panel').click(function() {
+  if (isEmpty($('#stats_table'))){
+    makeTable();
+    editDataChange();
+  } else {
+    editDataChange();
+  }
+});
+
+$('#block_by_index').click(function(){
+  blockByIndex();
+  editDataChange();
+});
+
+$('#filter_by_study').click(function(){
+  filter_by_study();
+  editDataChange();
+})
+
+$('#filter_by_value').click(function(){
+  filter_by_value();
+  editDataChange();
+})
+
+$('.edit_sample_value').change(function() {
+  editDataChange();
+});
+
+$('#exclude_group').click(editDataChange);
+$('#blockOutliers').click(editDataChange);
+$('#reset').click(editDataChange);
+$('#qnorm').click(editDataChange);
+$('#normalize').click(editDataChange);
+
+Number.prototype.countDecimals = function () {
+  if(Math.floor(this.valueOf()) === this.valueOf()) return 0;
+    return this.toString().split(".")[1].length || 0;
+}
diff --git a/gn2/wqflask/static/new/javascript/show_trait_mapping_tools.js b/gn2/wqflask/static/new/javascript/show_trait_mapping_tools.js
new file mode 100644
index 00000000..a4e6dafc
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/show_trait_mapping_tools.js
@@ -0,0 +1,329 @@
+var block_outliers, composite_mapping_fields, do_ajax_post, get_progress, mapping_method_fields, open_mapping_results, outlier_text, showalert, submit_special, toggle_enable_disable, update_time_remaining;
+
+update_time_remaining = function(percent_complete) {
+  var minutes_remaining, now, period, total_seconds_remaining;
+  now = new Date();
+  period = now.getTime() - root.start_time;
+  console.log("period is:", period);
+  if (period > 8000) {
+    total_seconds_remaining = (period / percent_complete * (100 - percent_complete)) / 1000;
+    minutes_remaining = Math.round(total_seconds_remaining / 60);
+    if (minutes_remaining < 3) {
+      return $('#time_remaining').text(Math.round(total_seconds_remaining) + " seconds remaining");
+    } else {
+      return $('#time_remaining').text(minutes_remaining + " minutes remaining");
+    }
+  }
+};
+
+get_progress = function() {
+  var params, params_str, temp_uuid, url;
+  console.log("temp_uuid:", $("#temp_uuid").val());
+  temp_uuid = $("#temp_uuid").val();
+  params = {
+    key: temp_uuid
+  };
+  params_str = $.param(params);
+  url = "/get_temp_data?" + params_str;
+  console.log("url:", url);
+  $.ajax({
+    type: "GET",
+    url: url,
+    success: (function(_this) {
+      return function(progress_data) {
+        var percent_complete;
+        percent_complete = progress_data['percent_complete'];
+        console.log("in get_progress data:", progress_data);
+        $('#marker_regression_progress').css("width", percent_complete + "%");
+        if (root.start_time) {
+          if (!isNaN(percent_complete)) {
+            return update_time_remaining(percent_complete);
+          }
+        } else {
+          return root.start_time = new Date().getTime();
+        }
+      };
+    })(this)
+  });
+  return false;
+};
+
+block_outliers = function() {
+  return $('.outlier').each((function(_this) {
+    return function(_index, element) {
+      return $(element).find('.trait_value_input').val('x');
+    };
+  })(this));
+};
+
+do_ajax_post = function(url, form_data) {
+  $.ajax({
+    type: "POST",
+    url: url,
+    data: form_data,
+    error: (function(_this) {
+      return function(xhr, ajaxOptions, thrownError) {
+        alert("Sorry, an error occurred");
+        console.log(xhr);
+        clearInterval(_this.my_timer);
+        $('#progress_bar_container').modal('hide');
+        $('#static_progress_bar_container').modal('hide');
+        return $("body").html("We got an error.");
+      };
+    })(this),
+    success: (function(_this) {
+      return function(data) {
+        clearInterval(_this.my_timer);
+        $('#progress_bar_container').modal('hide');
+        $('#static_progress_bar_container').modal('hide');
+        return open_mapping_results(data);
+      };
+    })(this)
+  });
+  console.log("settingInterval");
+  this.my_timer = setInterval(get_progress, 1000);
+  return false;
+};
+
+open_mapping_results = function(data) {
+  return $.colorbox({
+    html: data,
+    href: "#mapping_results_holder",
+    height: "90%",
+    width: "90%",
+    onComplete: (function(_this) {
+      return function() {
+        var filename, getSvgXml;
+        root.create_lod_chart();
+        filename = "lod_chart_" + js_data.this_trait;
+        getSvgXml = function() {
+          var svg;
+          svg = $("#topchart").find("svg")[0];
+          return (new XMLSerializer).serializeToString(svg);
+        };
+        $("#exportform > #export").click(function() {
+          var form, svg_xml;
+          svg_xml = getSvgXml();
+          form = $("#exportform");
+          form.find("#data").val(svg_xml);
+          form.find("#filename").val(filename);
+          return form.submit();
+        });
+        return $("#exportpdfform > #export_pdf").click(function() {
+          var form, svg_xml;
+          svg_xml = getSvgXml();
+          form = $("#exportpdfform");
+          form.find("#data").val(svg_xml);
+          form.find("#filename").val(filename);
+          return form.submit();
+        });
+      };
+    })(this)
+  });
+};
+
+outlier_text = "One or more outliers exist in this data set. Please review values before mapping. Including outliers when mapping may lead to misleading results.";
+showalert = function(message, alerttype) {
+  return $('#outlier_alert_placeholder').append('<div id="mapping_alert" class="alert ' + alerttype + '"><a class="close" data-dismiss="alert">�</a><span>' + message + '</span></div>');
+};
+
+$('#suggestive').hide();
+
+$('input[name=display_all]').change((function(_this) {
+  return function() {
+    if ($('input[name=display_all]:checked').val() === "False") {
+      return $('#suggestive').show();
+    } else {
+      return $('#suggestive').hide();
+    }
+  };
+})(this));
+
+// This is a list of inputs to be passed to the loading page, since not all inputs on the trait page are relevant to mapping
+var mapping_input_list = ['temp_uuid', 'trait_id', 'dataset', 'tool_used', 'form_url', 'method',
+                          'transform', 'trimmed_markers', 'selected_chr', 'chromosomes', 'mapping_scale',
+                          'sample_vals', 'vals_hash', 'score_type', 'suggestive', 'significant',
+                          'num_perm', 'permCheck', 'perm_output', 'perm_strata', 'categorical_vars',
+                          'num_bootstrap', 'bootCheck', 'bootstrap_results', 'LRSCheck', 'covariates',
+                          'maf', 'use_loco', 'manhattan_plot', 'control_marker', 'do_control',
+                          'genofile', 'pair_scan', 'startMb', 'endMb', 'graphWidth', 'lrsMax',
+                          'additiveCheck', 'showSNP', 'showGenes', 'viewLegend', 'haplotypeAnalystCheck', 
+                          'mapmethod_rqtl', 'mapmodel_rqtl', 'temp_trait', 'group', 'species',
+                          'reaper_version', 'primary_samples']
+
+$(".rqtl-geno-tab, #rqtl_geno_compute").on("click", (function(_this) {
+  return function() {
+    if ($(this).hasClass('active') || $(this).attr('id') == "rqtl_geno_compute"){
+      var form_data, url;
+      url = "/loading";
+      $('input[name=method]').val("rqtl_geno");
+      $('input[name=pair_scan]').val("false");
+      $('input[name=selected_chr]').val($('#chr_rqtl_geno').val());
+      $('input[name=mapping_scale]').val($('#scale_rqtl_geno').val());
+      $('input[name=genofile]').val($('#genofile_rqtl_geno').val());
+      $('input[name=mapmodel_rqtl]').val($('#mapmodel_rqtl_geno').val());
+      $('input[name=mapmethod_rqtl]').val($('#mapmethod_rqtl_geno').val());
+      $('input[name=num_perm]').val($('input[name=num_perm_rqtl_geno]').val());
+      $('input[name=categorical_vars]').val(js_data.categorical_vars)
+      $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_rqtl]:checked').val());
+      $('input[name=control_marker]').val($('input[name=control_rqtl_geno]').val());
+      $('input[name=do_control]').val($('input[name=do_control_rqtl]:checked').val());
+      $('input[name=tool_used]').val("Mapping");
+      $('input[name=form_url]').val("/run_mapping");
+      $('input[name=wanted_inputs]').val(mapping_input_list.join(","));
+      return submit_special(url);
+    } else {
+      return true
+    }
+  };
+})(this));
+
+$(".rqtl-pair-tab, #rqtl_pair_compute").on("click", (function(_this) {
+  return function() {
+    if ($(this).hasClass('active') || $(this).attr('id') == "rqtl_pair_compute"){
+      var form_data, url;
+      url = "/loading";
+      $('input[name=method]').val("rqtl_geno");
+      $('input[name=pair_scan]').val("true");
+      $('input[name=genofile]').val($('#genofile_rqtl_pair').val());
+      $('input[name=mapmodel_rqtl]').val($('#mapmodel_rqtl_pair').val());
+      $('input[name=mapmethod_rqtl]').val($('#mapmethod_rqtl_pair').val());
+      $('input[name=num_perm]').val($('input[name=num_perm_rqtl_pair]').val());
+      $('input[name=categorical_vars]').val(js_data.categorical_vars)
+      $('input[name=control_marker]').val($('input[name=control_rqtl_pair]').val());
+      $('input[name=do_control]').val($('input[name=do_control_rqtl_pair]:checked').val());
+      $('input[name=tool_used]').val("Mapping");
+      $('input[name=form_url]').val("/run_mapping");
+      $('input[name=wanted_inputs]').val(mapping_input_list.join(","));
+      return submit_special(url);
+    } else {
+      return true
+    }
+  };
+})(this));
+
+$(".gemma-tab, #gemma_compute").on("click", (function(_this) {
+  return function() {
+    if ($(this).hasClass('active') || $(this).attr('id') == "gemma_compute"){
+      var form_data, url;
+      url = "/loading";
+      $('input[name=method]').val("gemma");
+      $('input[name=mapping_scale]').val('physic');
+      $('input[name=selected_chr]').val($('#chr_gemma').val());
+      $('input[name=num_perm]').val(0);
+      $('input[name=genofile]').val($('#genofile_gemma').val());
+      $('input[name=maf]').val($('input[name=maf_gemma]').val());
+      $('input[name=tool_used]').val("Mapping");
+      $('input[name=form_url]').val("/run_mapping");
+      $('input[name=wanted_inputs]').val(mapping_input_list.join(","));
+      return submit_special(url);
+    } else {
+      return true
+    }
+  };
+})(this));
+
+$(".reaper-tab, #interval_mapping_compute").on("click", (function(_this) {
+  return function() {
+    if ($(this).hasClass('active') || $(this).attr('id') == "interval_mapping_compute"){
+      var form_data, url;
+      console.log("In interval mapping");
+      url = "/loading";
+      $('input[name=method]').val("reaper");
+      $('input[name=selected_chr]').val($('#chr_reaper').val());
+      $('input[name=mapping_scale]').val($('#scale_reaper').val());
+      $('input[name=genofile]').val($('#genofile_reaper').val());
+      $('input[name=num_perm]').val($('input[name=num_perm_reaper]').val());
+      $('input[name=control_marker]').val($('input[name=control_reaper]').val());
+      $('input[name=do_control]').val($('input[name=do_control_reaper]:checked').val());
+      $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_reaper]:checked').val());
+      $('input[name=mapping_display_all]').val($('input[name=display_all_reaper]'));
+      $('input[name=suggestive]').val($('input[name=suggestive_reaper]'));
+      $('input[name=tool_used]').val("Mapping");
+      $('input[name=form_url]').val("/run_mapping");
+      $('input[name=wanted_inputs]').val(mapping_input_list.join(","));
+      return submit_special(url);
+    } else {
+      return true
+    }
+  };
+})(this));
+
+$("#interval_mapping_compute, #gemma_compute, rqtl_geno_compute").on("mouseover", (function(_this) {
+  return function() {
+    if ($(".outlier").length && $(".outlier-alert").length < 1) {
+      return showalert(outlier_text, "alert-success outlier-alert");
+    }
+  };
+})(this));
+
+composite_mapping_fields = function() {
+  return $(".composite_fields").toggle();
+};
+
+mapping_method_fields = function() {
+  return $(".mapping_method_fields").toggle();
+};
+
+$("#use_composite_choice").change(composite_mapping_fields);
+
+$("#mapping_method_choice").change(mapping_method_fields);
+
+$("#mapmodel_rqtl_geno,#mapmodel_rqtl_pair").change(function() {
+  if ($(this).val() == "np"){
+    $("#mapmethod_rqtl_geno").attr('disabled', 'disabled');
+    $("#mapmethod_rqtl_geno").css('background-color', '#CCC');
+    $("#missing_geno,#missing_geno_pair").attr('disabled', 'disabled');
+    $("#missing_geno,#missing_geno_pair").css('background-color', '#CCC');
+  } else {
+    $("#mapmethod_rqtl_geno").removeAttr('disabled');
+    $("#mapmethod_rqtl_geno").css('background-color', '#FFF');
+    $("#missing_geno,#missing_geno_pair").removeAttr('disabled');
+    $("#missing_geno,#missing_geno_pair").css('background-color', '#FFF');
+  }
+});
+
+$("#mapmethod_rqtl_geno,#mapmethod_rqtl_pair").change(function() {
+  if ($(this).val() == "mr"){
+    $("#missing_geno_div,#missing_geno_pair_div").css('display', 'block');
+  } else {
+    $("#missing_geno_div,#missing_geno_pair_div").css('display', 'none');
+  }
+});
+
+$("li.mapping-tab").click(function() {
+  if ($(this).hasClass("rqtl")){
+    $(".rqtl_description").css("display", "block");
+  } else {
+    $(".rqtl_description").css("display", "none");
+  }
+});
+
+toggle_enable_disable = function(elem) {
+  return $(elem).prop("disabled", !$(elem).prop("disabled"));
+};
+
+$("#choose_closet_control").change(function() {
+  return toggle_enable_disable("#control_locus");
+});
+
+$("#display_all_lrs").change(function() {
+  return toggle_enable_disable("#suggestive_lrs");
+});
+
+$('#genofile_rqtl_geno').change(function() {
+  geno_location = $(this).children("option:selected").val().split(":")[0]
+  $('#scale_rqtl_geno').empty()
+  the_scales = js_data.scales_in_geno[geno_location]
+  for (var i = 0; i < the_scales.length; i++){
+    $('#scale_rqtl_geno').append($("<option></option>").attr("value", the_scales[i][0]).text(the_scales[i][1]));
+  }
+});
+$('#genofile_reaper').change(function() {
+  geno_location = $(this).children("option:selected").val().split(":")[0]
+  $('#scale_reaper').empty()
+  the_scales = js_data.scales_in_geno[geno_location]
+  for (var i = 0; i < the_scales.length; i++){
+    $('#scale_reaper').append($("<option></option>").attr("value", the_scales[i][0]).text(the_scales[i][1]));
+  }
+});
diff --git a/gn2/wqflask/static/new/javascript/stats.js b/gn2/wqflask/static/new/javascript/stats.js
new file mode 100644
index 00000000..6c443ab3
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/stats.js
@@ -0,0 +1,176 @@
+// Generated by CoffeeScript 1.8.0
+var Stats, bxd_only;
+
+Stats = (function() {
+  function Stats(the_values) {
+    this.the_values = the_values;
+  }
+
+  Stats.prototype.add_value = function(value) {
+    return this.the_values.push(value);
+  };
+
+  Stats.prototype.n_of_samples = function() {
+    return this.the_values.length;
+  };
+
+  Stats.prototype.sum = function() {
+    var total, value, _i, _len, _ref;
+    total = 0;
+    _ref = this.the_values;
+    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+      value = _ref[_i];
+      total += value;
+    }
+    return total;
+  };
+
+  Stats.prototype.mean = function() {
+    return this.sum() / this.n_of_samples();
+  };
+
+  Stats.prototype.median = function() {
+    var is_odd, median_position, the_values_sorted;
+    is_odd = this.the_values.length % 2;
+    median_position = Math.floor(this.the_values.length / 2);
+    the_values_sorted = this.the_values.sort(function(a, b) {
+      return a - b;
+    });
+    if (is_odd) {
+      return the_values_sorted[median_position];
+    } else {
+      return (the_values_sorted[median_position] + the_values_sorted[median_position - 1]) / 2;
+    }
+  };
+
+  Stats.prototype.std_dev = function() {
+    var step_a, step_b, sum, value, _i, _len, _ref;
+    sum = 0;
+    _ref = this.the_values;
+    for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+      value = _ref[_i];
+      step_a = Math.pow(value - this.mean(), 2);
+      sum += step_a;
+    }
+    step_b = sum / this.the_values.length;
+    return Math.sqrt(step_b);
+  };
+
+  Stats.prototype.std_error = function() {
+    return this.std_dev() / Math.sqrt(this.n_of_samples());
+  };
+
+  Stats.prototype.min = function() {
+    return Math.min.apply(Math, this.the_values);
+  };
+
+  Stats.prototype.max = function() {
+    return Math.max.apply(Math, this.the_values);
+  };
+
+  Stats.prototype.range = function() {
+    if (js_data.dataset_type == "ProbeSet"){
+      if (js_data.data_scale == "linear_positive"){
+        return Math.log2(this.max()) - Math.log2(this.min());
+      } else {
+        return this.max() - this.min()
+      }
+    } else {
+      return this.max() - this.min()
+    }
+  };
+
+  Stats.prototype.range_fold = function() {
+    if (js_data.dataset_type == "ProbeSet"){
+      return Math.pow(2, this.range());
+    } else {
+      return this.range()
+    }
+  };
+
+  Stats.prototype.interquartile = function() {
+    var iq, length, q1, q3;
+    length = this.the_values.length;
+    if (js_data.dataset_type == "ProbeSet" && js_data.data_scale == "linear_positive") {
+      q1 = Math.log2(this.the_values[Math.floor(length * .25)]);
+      q3 = Math.log2(this.the_values[Math.floor(length * .75)]);
+    } else {
+      q1 = this.the_values[Math.floor(length * .25)];
+      q3 = this.the_values[Math.floor(length * .75)];
+    }
+    iq = q3 - q1;
+    if (js_data.dataset_type == "ProbeSet") {
+        return Math.pow(2, iq);
+    } else {
+        return iq;
+    }
+  };
+
+  Stats.prototype.skewness = function() {
+    var len = this.the_values.length,
+        delta = 0,
+        delta_n = 0,
+        term1 = 0,
+        N = 0,
+        mean = 0,
+        M2 = 0,
+        M3 = 0,
+        g;
+
+    for ( var i = 0; i < len; i++ ) {
+      N += 1;
+
+      delta = this.the_values[ i ] - mean;
+      delta_n = delta / N;
+
+      term1 = delta * delta_n * (N-1);
+
+      M3 += term1*delta_n*(N-2) - 3*delta_n*M2;
+      M2 += term1;
+      mean += delta_n;
+    }
+    // Calculate the population skewness:
+    g = Math.sqrt( N )*M3 / Math.pow( M2, 3/2 );
+
+    // Return the corrected sample skewness:
+    return Math.sqrt( N*(N-1))*g / (N-2);
+  };
+
+  Stats.prototype.kurtosis = function() {
+    var len = this.the_values.length,
+        delta = 0,
+        delta_n = 0,
+        delta_n2 = 0,
+        term1 = 0,
+        N = 0,
+        mean = 0,
+        M2 = 0,
+        M3 = 0,
+        M4 = 0,
+        g;
+
+    for ( var i = 0; i < len; i++ ) {
+      N += 1;
+
+      delta = this.the_values[ i ] - mean;
+      delta_n = delta / N;
+      delta_n2 = delta_n * delta_n;
+
+      term1 = delta * delta_n * (N-1);
+
+      M4 += term1*delta_n2*(N*N - 3*N + 3) + 6*delta_n2*M2 - 4*delta_n*M3;
+      M3 += term1*delta_n*(N-2) - 3*delta_n*M2;
+      M2 += term1;
+      mean += delta_n;
+    }
+    // Calculate the population excess kurtosis:
+    g = N*M4 / (M2*M2) - 3;
+    //Return the corrected sample excess kurtosis:
+    return (N-1) / ( (N-2)*(N-3) ) * ( (N+1)*g + 6 );
+  };
+
+  return Stats;
+
+})();
+
+window.Stats = Stats;
diff --git a/gn2/wqflask/static/new/javascript/table_functions.js b/gn2/wqflask/static/new/javascript/table_functions.js
new file mode 100644
index 00000000..62888cd9
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/table_functions.js
@@ -0,0 +1,90 @@
+recheckRows = function(theTable, checkedRows){
+  // This is meant to recheck checkboxes after columns are resized
+  checkCells = theTable.column(0).nodes().to$();
+  for (let i = 0; i < checkCells.length; i++) {
+    if (checkedRows.includes(i)){
+      checkCells[i].childNodes[0].checked = true;
+    }
+  }
+
+  checkRows = traitTable.rows().nodes();
+  for (let i =0; i < checkRows.length; i++) {
+    if (checkedRows.includes(i)){
+      checkRows[i].classList.add("selected")
+    }
+  }
+}
+
+getCheckedRows = function(tableId){
+  let checkedRows = []
+  $("#" + tableId + " input.checkbox").each(function(index){
+    if ($(this).prop("checked") == true){
+      checkedRows.push(index);
+    }
+  });
+
+  return checkedRows
+}
+
+function setUserColumnsDefWidths(tableId, columnDefs) {
+  var userColumnDef;
+
+  // Get the settings for this table from localStorage
+  var userColumnDefs = JSON.parse(localStorage.getItem(tableId)) || [];
+
+  if (userColumnDefs.length === 0 ) return;
+
+  columnDefs.forEach( function(columnDef) {
+    // Check if there is a width specified for this column
+    userColumnDef = userColumnDefs.find( function(column) {
+      return column.targets === columnDef.targets;
+    });
+
+    // If there is, set the width of this columnDef in px
+    if ( userColumnDef ) {
+
+      columnDef.sWidth = userColumnDef.width + 'px';
+      columnDef.width = userColumnDef.width + 'px';
+
+      $('.toggle-vis').each(function(){
+        if ($(this).attr('data-column') == columnDef.targets){
+          if ($(this).hasClass("active")){
+            columnDef.bVisible = false
+          } else {
+            columnDef.bVisible = true
+          }
+        }
+      })
+    }
+  });
+
+  return columnDefs
+}
+
+function saveColumnSettings(tableId, traitTable) {
+  var userColumnDefs = JSON.parse(localStorage.getItem(tableId)) || [];
+  var width, header, existingSetting; 
+
+  traitTable.columns().every( function ( targets ) {
+    // Check if there is a setting for this column in localStorage
+    existingSetting = userColumnDefs.findIndex( function(column) { return column.targets === targets;});
+
+    // Get the width of this column
+    header = this.header();
+    width = $(header).width();
+
+    if ( existingSetting !== -1 ) {
+    // Update the width
+    userColumnDefs[existingSetting].width = width;
+    } else {
+      // Add the width for this column
+      userColumnDefs.push({
+          targets: targets,
+          width:  width,
+      });
+    }
+  });
+
+  // Save (or update) the settings in localStorage
+  localStorage.setItem(tableId, JSON.stringify(userColumnDefs));
+}
diff --git a/gn2/wqflask/static/new/javascript/thank_you.js b/gn2/wqflask/static/new/javascript/thank_you.js
new file mode 100644
index 00000000..deb68211
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/thank_you.js
@@ -0,0 +1,6 @@
+// Generated by CoffeeScript 1.8.0
+$(function() {
+  console.log("Starting transform");
+  $('#login_out').text('Sign out').attr('href', '/logout').removeClass('modalize');
+  return console.log("Transformed to sign out I hope");
+});
diff --git a/gn2/wqflask/static/new/javascript/typeahead_rn6.json b/gn2/wqflask/static/new/javascript/typeahead_rn6.json
new file mode 100644
index 00000000..1889d8a2
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/typeahead_rn6.json
@@ -0,0 +1 @@
+var rat_genes = 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diff --git a/gn2/wqflask/static/new/javascript/validation.js b/gn2/wqflask/static/new/javascript/validation.js
new file mode 100644
index 00000000..2cacacfa
--- /dev/null
+++ b/gn2/wqflask/static/new/javascript/validation.js
@@ -0,0 +1,42 @@
+// Generated by CoffeeScript 1.8.0
+$(function() {
+  var remove_samples_is_valid, validate_remove_samples;
+  remove_samples_is_valid = function(input) {
+    var new_splats, pattern, splat, splats, _i, _len;
+    if (_.trim(input).length === 0) {
+      return true;
+    }
+    splats = input.split(",");
+    new_splats = (function() {
+      var _i, _len, _results;
+      _results = [];
+      for (_i = 0, _len = splats.length; _i < _len; _i++) {
+        input = splats[_i];
+        _results.push(_.trim(input));
+      }
+      return _results;
+    })();
+    pattern = /^\d+\s*(?:-\s*\d+)?\s*$/;
+    for (_i = 0, _len = new_splats.length; _i < _len; _i++) {
+      splat = new_splats[_i];
+      if (!splat.match(pattern)) {
+        return false;
+      }
+    }
+    return true;
+  };
+  validate_remove_samples = function() {
+
+    /*
+    Check if input for the remove samples function is valid and notify the user if not
+     */
+    var input;
+    input = $('#remove_samples_field').val();
+    if (remove_samples_is_valid(input)) {
+      return $('#remove_samples_invalid').hide();
+    } else {
+      return $('#remove_samples_invalid').show();
+    }
+  };
+  return $('#remove_samples_field').change(validate_remove_samples);
+});