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| author | zsloan | 2024-05-22 19:58:50 +0000 |
|---|---|---|
| committer | zsloan | 2024-05-22 19:58:50 +0000 |
| commit | eb649f3e2671cb9a8a9b95d301d6ed4cc40c0656 (patch) | |
| tree | 7720f8e38357a6f6f6c81a9a37eeb14928c30ba2 /gn2/wqflask/show_trait | |
| parent | 1d720241036f4c0a44bf79e2b39f822a0f042a29 (diff) | |
| download | genenetwork2-eb649f3e2671cb9a8a9b95d301d6ed4cc40c0656.tar.gz | |
Check if case attribute for RRID is a list, to prevent it being added twice in situations where a sample appears in both the parent/f1 file and the .geno file
Diffstat (limited to 'gn2/wqflask/show_trait')
| -rw-r--r-- | gn2/wqflask/show_trait/SampleList.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/gn2/wqflask/show_trait/SampleList.py b/gn2/wqflask/show_trait/SampleList.py index 64fc8fe6..64909d6e 100644 --- a/gn2/wqflask/show_trait/SampleList.py +++ b/gn2/wqflask/show_trait/SampleList.py @@ -81,7 +81,8 @@ class SampleList: sample.extra_attributes['36'].append( webqtlConfig.RRID_MOUSE_URL % the_rrid) elif self.dataset.group.species == "rat": - if len(rrid_string): + # Check if it's a list just in case a parent/f1 strain also shows up in the .geno file, to avoid being added twice + if len(rrid_string) and not isinstance(sample.extra_attributes['36'], list): the_rrid = rrid_string.split("_")[1] sample.extra_attributes['36'] = [ rrid_string] |