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author | Frederick Muriuki Muriithi | 2024-09-11 04:00:59 -0500 |
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committer | Frederick Muriuki Muriithi | 2024-09-11 04:00:59 -0500 |
commit | 8618fdc8f4c05153f48e1afdbf9d2c337ba79929 (patch) | |
tree | 00500ed03223b284ab535fd16e242ca6e5cc387b /gn2/wqflask/marker_regression/rqtl_mapping.py | |
parent | d001c1e7cae8f69435545b8715038b1d0fc1ee62 (diff) | |
download | genenetwork2-8618fdc8f4c05153f48e1afdbf9d2c337ba79929.tar.gz |
BugFix: Avoid string interpolation for building URLs
The string interpolation previously used was leading to a URL of the
form `http://localhost:9080api/rqtl/compute` rather than
`http://localhost:9080/api/rqtl/compute`.
Diffstat (limited to 'gn2/wqflask/marker_regression/rqtl_mapping.py')
-rw-r--r-- | gn2/wqflask/marker_regression/rqtl_mapping.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn2/wqflask/marker_regression/rqtl_mapping.py b/gn2/wqflask/marker_regression/rqtl_mapping.py index b7739228..571935cb 100644 --- a/gn2/wqflask/marker_regression/rqtl_mapping.py +++ b/gn2/wqflask/marker_regression/rqtl_mapping.py @@ -8,6 +8,7 @@ from typing import Dict from typing import List from typing import Optional from typing import TextIO +from urllib.parse import urljoin import numpy as np @@ -54,7 +55,8 @@ def run_rqtl(trait_name, vals, samples, dataset, pair_scan, mapping_scale, model if perm_strata_list: post_data["pstrata"] = True - rqtl_output = requests.post(GN3_LOCAL_URL + "api/rqtl/compute", data=post_data).json() + rqtl_output = requests.post(urljoin(GN3_LOCAL_URL, "api/rqtl/compute"), + data=post_data).json() if num_perm > 0: return rqtl_output['perm_results'], rqtl_output['suggestive'], rqtl_output['significant'], rqtl_output['results'] else: |