Namespace all modules under gn2.

We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.

4 files changed, 77 insertions, 0 deletions

diff --git a/gn2/tests/unit/wqflask/correlation/__init__.py b/gn2/tests/unit/wqflask/correlation/__init__.py
new file mode 100644
index 00000000..e69de29b
--- /dev/null
+++ b/gn2/tests/unit/wqflask/correlation/__init__.py
diff --git a/gn2/tests/unit/wqflask/correlation/test_correlation_functions.py b/gn2/tests/unit/wqflask/correlation/test_correlation_functions.py
new file mode 100644
index 00000000..c0f57141
--- /dev/null
+++ b/gn2/tests/unit/wqflask/correlation/test_correlation_functions.py
@@ -0,0 +1,21 @@
+"""module contains tests for correlation functions"""
+
+import unittest
+from unittest import mock
+
+from gn2.wqflask.correlation.correlation_functions import get_trait_symbol_and_tissue_values
+from gn2.wqflask.correlation.correlation_functions import cal_zero_order_corr_for_tiss
+
+
+def test_tissue_corr_computation(mocker):
+    """Test for cal_zero_order_corr_for_tiss"""
+    primary_values = [9.288, 9.313, 8.988, 9.660, 8.21]
+    target_values = [9.586, 8.498, 9.362, 8.820, 8.786]
+    _m = mocker.patch(("wqflask.correlation.correlation_functions."
+                       "compute_corr_coeff_p_value"),
+                      return_value=(0.51, 0.7))
+    results = cal_zero_order_corr_for_tiss(primary_values, target_values)
+    _m.assert_called_once_with(
+        primary_values=primary_values, target_values=target_values,
+        corr_method="pearson")
+    assert len(results) == 3
diff --git a/gn2/tests/unit/wqflask/correlation/test_correlation_gn3.py b/gn2/tests/unit/wqflask/correlation/test_correlation_gn3.py
new file mode 100644
index 00000000..432dbc95
--- /dev/null
+++ b/gn2/tests/unit/wqflask/correlation/test_correlation_gn3.py
@@ -0,0 +1,14 @@
+"""this module contains tests for code used in integrating to gn3 api"""
+from unittest import TestCase
+from gn2.base.data_set import create_dataset
+
+class TestCorrelation(TestCase):
+
+    def test_create_dataset(self):
+        """test for creating datasets"""
+
+        pass
+    def test_fetch_dataset_info(self):
+        """test for fetching dataset info data"""
+
+        pass
diff --git a/gn2/tests/unit/wqflask/correlation/test_show_corr_results.py b/gn2/tests/unit/wqflask/correlation/test_show_corr_results.py
new file mode 100644
index 00000000..b1459dd9
--- /dev/null
+++ b/gn2/tests/unit/wqflask/correlation/test_show_corr_results.py
@@ -0,0 +1,42 @@
+import unittest
+from unittest import mock
+from gn2.wqflask.correlation.show_corr_results import get_header_fields
+
+
+class AttributeSetter:
+    def __init__(self, trait_obj):
+        for key, value in trait_obj.items():
+            setattr(self, key, value)
+
+
+class TestShowCorrResults(unittest.TestCase):
+    def test_get_header_fields(self):
+        expected = [
+            ['Index',
+             'Record',
+             'Symbol',
+             'Description',
+             'Location',
+             'Mean',
+             'Sample rho',
+             'N',
+             'Sample p(rho)',
+             'Lit rho',
+             'Tissue rho',
+             'Tissue p(rho)',
+             'Max LRS',
+             'Max LRS Location',
+             'Additive Effect'],
+
+            ['Index',
+             'ID',
+             'Location',
+             'Sample r',
+             'N',
+             'Sample p(r)']
+
+        ]
+        result1 = get_header_fields("ProbeSet", "spearman")
+        result2 = get_header_fields("Other", "Other")
+        self.assertEqual(result1, expected[0])
+        self.assertEqual(result2, expected[1])