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authorPjotr Prins2016-02-24 16:34:52 +0000
committerPjotr Prins2016-04-20 09:28:22 +0000
commit575e00b1061c58952cba38af5ab078ca0081b4d7 (patch)
treee51b160a262ebe83785ad6fd9f36f1156733dd34 /etc/default_settings.py
parent1e9d7476697bf8b60ab1004f25b295f81d94de49 (diff)
downloadgenenetwork2-575e00b1061c58952cba38af5ab078ca0081b4d7.tar.gz
[PATCH 041/100] Fixes for running tools
Diffstat (limited to 'etc/default_settings.py')
-rw-r--r--etc/default_settings.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py
index 6a218f26..60a3a7b4 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -24,6 +24,6 @@ SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a
# Path overrides for Genenetwork
GENENETWORK_FILES = "../../gn2_data"
-PYLMM_COMMAND = os.popen("which pylmm_redis").read()
-PLINK_COMMAND = os.popen("which plink2").read()
-GEMMA_COMMAND = os.popen("which gemma").read()
+PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read())
+PLINK_COMMAND = str.strip(os.popen("which plink2").read())
+GEMMA_COMMAND = str.strip(os.popen("which gemma").read())