Merge /home/gn2/gene

1 files changed, 29 insertions, 0 deletions

diff --git a/etc/default_settings.py b/etc/default_settings.py
new file mode 100644
index 00000000..0cf40265
--- /dev/null
+++ b/etc/default_settings.py
@@ -0,0 +1,29 @@
+import os
+import sys
+
+LOGFILE = "/tmp/genenetwork2.log"
+
+# This is needed because Flask turns key errors into a
+# 400 bad request response with no exception/log
+TRAP_BAD_REQUEST_ERRORS = True
+
+DB_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s"
+SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s'
+
+# http://pythonhosted.org/Flask-Security/configuration.html
+SECURITY_CONFIRMABLE = True
+SECURITY_TRACKABLE = True
+SECURITY_REGISTERABLE = True
+SECURITY_RECOVERABLE = True
+SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org"
+SECURITY_POST_LOGIN_VIEW = "/thank_you"
+SQLALCHEMY_POOL_RECYCLE = 3600
+
+SERVER_PORT = 5003
+SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc'
+
+# Path overrides for Genenetwork
+GENENETWORK_FILES = os.environ['HOME']+"/gn2_data"
+PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read())
+PLINK_COMMAND = str.strip(os.popen("which plink2").read())
+GEMMA_COMMAND = str.strip(os.popen("which gemma").read())