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authorzsloan2017-05-22 15:57:33 +0000
committerzsloan2017-05-22 15:57:33 +0000
commite32d5e9b1966b48e5e1c667d7194defe798a9517 (patch)
treeccfbc293d95f691db2917c7ad5a763dc69f5bb43 /doc/development.org
parent1517b200476380179e5c53c141a874348e28dd87 (diff)
parent9d4cb56608ca5de3495ede9149443e772a25d706 (diff)
downloadgenenetwork2-e32d5e9b1966b48e5e1c667d7194defe798a9517.tar.gz
Merge branch 'master' of github.com:genenetwork/genenetwork2 into development
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+* Development
+
+After cloning the git source tree you can run the contained GN2 using
+an existing GN2_PROFILE, i.e., use a profile that was create to run a
+binary installation of GN2. This profile may be found by typing
+
+: which genenetwork2
+: /home/wrk/opt/gn-latest-guix/bin/genenetwork2
+
+An example of running the development version would be
+
+: env GN2_PROFILE=/home/wrk/opt/gn-latest-guix ./bin/genenetwork2
+
+Profiles are stored in /gnu/store, so you may pick one up there
+
+: readlink -f $(dirname $(dirname `which genenetwork2`))
+: /gnu/store/dvckpaw770b00l6rv4ijql8wrk11iypv-profile
+
+and use that instead.
+
+Note that the genenetwork2 script sets up the environment for running
+the webserver. This includes path to R modules and python modules. These
+are output on startup. To make sure there is no environment pollution you can