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| author | zsloan | 2022-01-14 18:22:32 +0000 |
|---|---|---|
| committer | zsloan | 2022-01-14 18:22:32 +0000 |
| commit | 68ac19153b128f60b660e11365e5fd4304c95300 (patch) | |
| tree | 198e03522af43a2d41f3c02cf3785bcfd4635fc4 /doc/README.org | |
| parent | f588ad96ae5045499860fa6e2740e101ad4410d7 (diff) | |
| parent | 9ab0c3b6cc146e1711f1478242d4198eed720e4c (diff) | |
| download | genenetwork2-68ac19153b128f60b660e11365e5fd4304c95300.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/add_rqtl_pairscan
Diffstat (limited to 'doc/README.org')
| -rw-r--r-- | doc/README.org | 4 |
1 files changed, 1 insertions, 3 deletions
diff --git a/doc/README.org b/doc/README.org index 1236016e..e1c6b614 100644 --- a/doc/README.org +++ b/doc/README.org @@ -26,7 +26,7 @@ * Introduction -Large system deployments can get very [[http://biogems.info/contrib/genenetwork/gn2.svg ][complex]]. In this document we +Large system deployments can get very [[http://genenetwork.org/environments/][complex]]. In this document we explain the GeneNetwork version 2 (GN2) reproducible deployment system which is based on GNU Guix (see also [[https://github.com/pjotrp/guix-notes/blob/master/README.md][Guix-notes]]). The Guix system can be used to install GN with all its files and dependencies. @@ -81,14 +81,12 @@ GeneNetwork2 with : source ~/opt/guix-pull/etc/profile : git clone https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics.git ~/guix-bioinformatics : cd ~/guix-bioinformatics -: git pull : env GUIX_PACKAGE_PATH=$HOME/guix-bioinformatics guix package -i genenetwork2 -p ~/opt/genenetwork2 you probably also need guix-past (the upstream channel for older packages): : git clone https://gitlab.inria.fr/guix-hpc/guix-past.git ~/guix-past : cd ~/guix-past -: git pull : env GUIX_PACKAGE_PATH=$HOME/guix-bioinformatics:$HOME/guix-past/modules ~/opt/guix-pull/bin/guix package -i genenetwork2 -p ~/opt/genenetwork2 ignore the warnings. Guix should install the software without trying |