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| author | Arun Isaac | 2023-12-30 09:27:49 +0000 |
|---|---|---|
| committer | Arun Isaac | 2024-01-02 13:40:56 +0000 |
| commit | ff679636d3ee9ae2388fab3fe5d091ef2f00a8e3 (patch) | |
| tree | ba7d697312dea528847f04f1066e173dae905912 /bin | |
| parent | 26f17e7fff8d78ebb10528456fdbb9dee67c24d1 (diff) | |
| download | genenetwork2-ff679636d3ee9ae2388fab3fe5d091ef2f00a8e3.tar.gz | |
Move default settings into gn2 module.
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/genenetwork2 | 14 | ||||
| -rwxr-xr-x | bin/test-website | 2 |
2 files changed, 8 insertions, 8 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 2ac83c7f..3e2f31d3 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -25,15 +25,15 @@ # webserver) run from the base-dir with settings file and add that # script with a -c switch, e.g. # -# env GN2_PROFILE=/usr/local/guix-profiles/gn-latest-20190905 TMPDIR=/export/local/home/zas1024/gn2-zach/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG SERVER_PORT=5002 GENENETWORK_FILES=/export/local/home/zas1024/gn2-zach/genotype_files SQL_URI=mysql://webqtlout:webqtlout@lily.uthsc.edu/db_webqtl ./bin/genenetwork2 ./etc/default_settings.py -c ./maintenance/gen_select_dataset.py +# env GN2_PROFILE=/usr/local/guix-profiles/gn-latest-20190905 TMPDIR=/export/local/home/zas1024/gn2-zach/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG SERVER_PORT=5002 GENENETWORK_FILES=/export/local/home/zas1024/gn2-zach/genotype_files SQL_URI=mysql://webqtlout:webqtlout@lily.uthsc.edu/db_webqtl ./bin/genenetwork2 ./gn2/default_settings.py -c ./maintenance/gen_select_dataset.py # # To run any script in the environment # -# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -cli echo "HELLO WORLD" +# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./gn2/default_settings.py -cli echo "HELLO WORLD" # # To get a python REPL(!) # -# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -cli python +# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./gn2/default_settings.py -cli python # # For development you may want to run # @@ -42,15 +42,15 @@ # For staging and production we use gunicorn. Run with something like # (note you have to provide the server port). Provide a settings file! # -# env GN2_PROFILE=~/opt/gn-latest-guix SERVER_PORT=5003 ./bin/genenetwork2 ./etc/default_settings.py -gunicorn-prod +# env GN2_PROFILE=~/opt/gn-latest-guix SERVER_PORT=5003 ./bin/genenetwork2 ./gn2/default_settings.py -gunicorn-prod # # For development use # -# env GN2_PROFILE=~/opt/gn-latest-guix SERVER_PORT=5003 ./bin/genenetwork2 ./etc/default_settings.py -gunicorn-dev +# env GN2_PROFILE=~/opt/gn-latest-guix SERVER_PORT=5003 ./bin/genenetwork2 ./gn2/default_settings.py -gunicorn-dev # # For extra flexibility you can also provide gunicorn parameters yourself with something like # -# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2 ./etc/default_settings.py -gunicorn "--bind 0.0.0.0:5003 --workers=1 wsgi" +# env GN2_PROFILE=~/opt/gn-latest-guix ./bin/genenetwork2 ./gn2/default_settings.py -gunicorn "--bind 0.0.0.0:5003 --workers=1 wsgi" SCRIPT=$(realpath "$0") echo SCRIPT="${SCRIPT}" @@ -77,7 +77,7 @@ fi settings=$1 if [ -z "${settings}" ]; then - settings=$GN2_BASE_DIR/etc/default_settings.py + settings=$GN2_BASE_DIR/gn2/default_settings.py else shift fi diff --git a/bin/test-website b/bin/test-website index 7fbcfd2f..43264472 100755 --- a/bin/test-website +++ b/bin/test-website @@ -2,6 +2,6 @@ if [ -z $GN2_PROFILE ]; then echo "Run request tests with something like" - echo env GN2_PROFILE=/home/wrk/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -c ../test/requests/test-website.py -a http://localhost:5003 + echo env GN2_PROFILE=/home/wrk/opt/gn-latest ./bin/genenetwork2 ./gn2/default_settings.py -c ../test/requests/test-website.py -a http://localhost:5003 exit 1 fi |