diff options
| author | Pjotr Prins | 2020-04-26 12:32:46 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-04-26 12:32:46 -0500 |
| commit | 14d49450c47e8ef3b34bca9e759acd371319a854 (patch) | |
| tree | 3f45b7455ec114ebdd9fdd2f2c4a92c9eb3cf756 /bin | |
| parent | 33e2e09d00881de9b07274bc52b58587e5135cab (diff) | |
| parent | 15d8e24da26cf6d42d1bdb8a9a189b9ec061d147 (diff) | |
| download | genenetwork2-master.tar.gz | |
Merge master and testingmaster
Diffstat (limited to 'bin')
| -rwxr-xr-x | bin/genenetwork2 | 3 |
1 files changed, 1 insertions, 2 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 006e87ba..759c71dc 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -25,7 +25,7 @@ # webserver) run from the base-dir with settings file and add that # script with a -c switch, e.g. # -# env GN2_PROFILE=~/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -c ./maintenance/gen_select_dataset.py +# env GN2_PROFILE=/usr/local/guix-profiles/gn-latest-20190905 TMPDIR=/export/local/home/zas1024/gn2-zach/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG SERVER_PORT=5002 GENENETWORK_FILES=/export/local/home/zas1024/gn2-zach/genotype_files SQL_URI=mysql://webqtlout:webqtlout@lily.uthsc.edu/db_webqtl ./bin/genenetwork2 ./etc/default_settings.py -c ./maintenance/gen_select_dataset.py # # To run any script in the environment # @@ -131,7 +131,6 @@ else export LC_ALL=C # FIXME export GUIX_GENENETWORK_FILES="$GN2_PROFILE/share/genenetwork2" export PLINK_COMMAND="$GN2_PROFILE/bin/plink2" - export PYLMM_COMMAND="$GN2_PROFILE/bin/pylmm_redis" export GEMMA_COMMAND="$GN2_PROFILE/bin/gemma" if [ -z $GEMMA_WRAPPER_COMMAND ]; then export GEMMA_WRAPPER_COMMAND="$GN2_PROFILE/bin/gemma-wrapper" |