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authorAlexander_Kabui2022-09-07 00:13:34 +0300
committerAlexander_Kabui2022-09-07 00:13:34 +0300
commitf24df16b8629d9c4f869c0ccdaa245e8ba7a0b2e (patch)
treed6f6f82376c9bf362950b69579a30a2c10b6e049
parentd6c8505606b7b9fa1e41b3ee8bca303a0f8d6597 (diff)
downloadgenenetwork2-f24df16b8629d9c4f869c0ccdaa245e8ba7a0b2e.tar.gz
filter list vals with index
-rw-r--r--wqflask/wqflask/correlation/pre_computes.py10
1 files changed, 5 insertions, 5 deletions
diff --git a/wqflask/wqflask/correlation/pre_computes.py b/wqflask/wqflask/correlation/pre_computes.py
index eb089a03..aacc3071 100644
--- a/wqflask/wqflask/correlation/pre_computes.py
+++ b/wqflask/wqflask/correlation/pre_computes.py
@@ -194,6 +194,10 @@ def read_text_file(sample_dict, file_path):
return_list[0] = return_list[0][1:]
return return_list
+ def filter_line_with_index(line, index):
+ lst = parse_line_csv(line)
+ return ",".join([lst[i] for i in index])
+
def __fetch_id_positions__(all_ids, target_ids):
_vals = []
_posit = [0] # alternative for parsing
@@ -203,14 +207,10 @@ def read_text_file(sample_dict, file_path):
_vals.append(target_ids[strain])
_posit.append(idx)
- else:
- _vals.append("") # todo;modify x_vals to take string rust
-
return (_posit, _vals)
with open(file_path, "r") as file_handler:
all_ids = file_handler.readline()
_posit, sample_vals = __fetch_id_positions__(
parse_line_csv(all_ids)[1:], sample_dict)
-
- return (sample_vals, [",".join(parse_line_csv(line))
+ return (sample_vals, [filter_line_with_index(line, _posit)
for line in file_handler.readlines()])