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author | Frederick Muriuki Muriithi | 2023-07-12 16:02:51 +0300 |
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committer | Frederick Muriuki Muriithi | 2023-07-12 16:02:51 +0300 |
commit | f05f90a60f561e24312a4e7db5dbcc34d69c8cdc (patch) | |
tree | 744cce6eb43e4c90225854558f05838c99e89614 | |
parent | 477c3f34f8af919592c722cc1a71b2602cb7ac82 (diff) | |
download | genenetwork2-f05f90a60f561e24312a4e7db5dbcc34d69c8cdc.tar.gz |
Fix check for numeric values
The `str.isnumeric()` function returns false for numbers such as
'9.99', '88.8' etc. This commit provides a slightly more robust check
for strings that are numbers. It will fail for numbers with exponents
though.
-rw-r--r-- | wqflask/wqflask/metadata_edits.py | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/wqflask/wqflask/metadata_edits.py b/wqflask/wqflask/metadata_edits.py index 69732dfe..9f744909 100644 --- a/wqflask/wqflask/metadata_edits.py +++ b/wqflask/wqflask/metadata_edits.py @@ -1,3 +1,4 @@ +import re import datetime import json import os @@ -814,6 +815,10 @@ def approve_data(resource_id: str, file_name: str): ) return redirect(url_for("metadata_edit.list_diffs")) +def is_a_number(value: str): + """Check whether the string is a number""" + return bool(re.search(r"^[0-9]+\.*[0-9]*$", value)) + def create_delta_csv(base_csv, form_data, sample_list): base_csv_lines = base_csv.split("\n") delta_csv_lines = [base_csv_lines[0]] @@ -825,9 +830,10 @@ def create_delta_csv(base_csv, form_data, sample_list): if sample['name'] in key: new_line_items = [sample['name']] for field in ["value", "error", "n_cases"]: - if form_data.get(field + ":" + sample['name']): - if form_data.get(field + ":" + sample['name']).isnumeric(): - new_line_items.append(form_data.get(field + ":" + sample['name'])) + the_value = form_data.get(f"{field}:{sample['name']}") + if the_value: + if is_a_number(the_value): + new_line_items.append(the_value) continue new_line_items.append(sample[field]) delta_csv_lines.append(",".join(new_line_items)) |