Delete dead imports

* wqflask/base/data_set.py: Remove un-used imports.
* wqflask/base/trait.py: Ditto.
wqflask/tests/wqflask/show_trait/test_show_trait.py: Ditto.
* wqflask/wqflask/show_trait/show_trait.py: Ditto.
* wqflask/wqflask/views: Ditto.

5 files changed, 3 insertions, 33 deletions

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index ade38131..41c94078 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -21,8 +21,7 @@ from dataclasses import dataclass
 from dataclasses import field
 from dataclasses import InitVar
 from typing import Optional, Dict, List
-from utility.tools import USE_GN_SERVER, USE_REDIS, flat_files, flat_file_exists, GN2_BASE_URL
-from pprint import pformat as pf
+from utility.tools import USE_REDIS, flat_file_exists, GN2_BASE_URL
 from utility.db_tools import escape
 from utility.db_tools import mescape
 from utility.db_tools import create_in_clause
@@ -34,27 +33,22 @@ from utility import webqtlUtil
 from db import webqtlDatabaseFunction
 from base import species
 from base import webqtlConfig
-from flask import Flask, g
 from base.webqtlConfig import TMPDIR
 from urllib.parse import urlparse
 from utility.tools import SQL_URI
 from wqflask.database import database_connection
 import os
 import math
-import string
 import collections
 import codecs
 
 import json
 import requests
-import gzip
 import pickle as pickle
-import itertools
 import hashlib
-import datetime
-
 from redis import Redis
 
+
 r = Redis()
 
 # Used by create_database to instantiate objects
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 26aa687a..21575230 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -5,13 +5,10 @@ from wqflask import app
 from base import webqtlConfig
 from base.webqtlCaseData import webqtlCaseData
 from base.data_set import create_dataset
-from utility import hmac
 from utility.authentication_tools import check_resource_availability
 from utility.tools import GN2_BASE_URL, GN_PROXY_URL
 from utility.redis_tools import get_redis_conn, get_resource_id
 
-from utility.db_tools import escape
-
 from flask import g, request, url_for
 
 from wqflask.database import database_connection
diff --git a/wqflask/tests/wqflask/show_trait/test_show_trait.py b/wqflask/tests/wqflask/show_trait/test_show_trait.py
index 63df2ba5..3f2afee3 100644
--- a/wqflask/tests/wqflask/show_trait/test_show_trait.py
+++ b/wqflask/tests/wqflask/show_trait/test_show_trait.py
@@ -10,7 +10,6 @@ from wqflask.show_trait.show_trait import get_categorical_variables
 from wqflask.show_trait.show_trait import get_trait_units
 from wqflask.show_trait.show_trait import get_nearest_marker
 from wqflask.show_trait.show_trait import get_genotype_scales
-from wqflask.show_trait.show_trait import requests
 from wqflask.show_trait.show_trait import get_scales_from_genofile
 
 
diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index b12b6ba0..f7dbf8df 100644
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -18,13 +18,10 @@ from wqflask.show_trait.SampleList import SampleList
 from base.trait import create_trait
 from base import data_set
 from utility import helper_functions
-from utility.authentication_tools import check_owner_or_admin
 from utility.tools import locate_ignore_error
 from utility.tools import GN_PROXY_URL
 from utility.redis_tools import get_redis_conn, get_resource_id
 
-from gn3.authentication import AdminRole
-from gn3.authentication import DataRole
 from gn3.authentication import get_highest_user_access_role
 
 Redis = get_redis_conn()
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index acd65587..ee640726 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -22,32 +22,19 @@ from zipfile import ZIP_DEFLATED
 
 from wqflask import app
 
-from gn3.commands import run_cmd
 from gn3.computations.gemma import generate_hash_of_string
-from gn3.db import diff_from_dict
-from gn3.db import insert
-from gn3.db import update
-from gn3.db.metadata_audit import MetadataAudit
-from gn3.db.phenotypes import Phenotype
-from gn3.db.phenotypes import Probeset
-from gn3.db.phenotypes import Publication
-
 from flask import current_app
 from flask import g
-from flask import flash
 from flask import Response
 from flask import request
 from flask import make_response
 from flask import render_template
 from flask import send_from_directory
 from flask import redirect
-from flask import url_for
 from flask import send_file
-from flask import jsonify
 
 # Some of these (like collect) might contain endpoints, so they're still used.
 # Blueprints should probably be used instead.
-from wqflask import collect
 from wqflask import search_results
 from wqflask import server_side
 from base.data_set import create_dataset  # Used by YAML in marker_regression
@@ -68,7 +55,6 @@ from wqflask.correlation.rust_correlation import compute_correlation_rust
 from wqflask.correlation_matrix import show_corr_matrix
 from wqflask.correlation import corr_scatter_plot
 # from wqflask.wgcna import wgcna_analysis
-from wqflask.ctl import ctl_analysis
 from wqflask.ctl.gn3_ctl_analysis import run_ctl
 
 from wqflask.wgcna.gn3_wgcna import run_wgcna
@@ -90,13 +76,10 @@ from utility.tools import GN_VERSION
 from utility.tools import JS_TWITTER_POST_FETCHER_PATH
 from utility.tools import JS_GUIX_PATH
 from utility.helper_functions import get_species_groups
-from utility.authentication_tools import check_resource_availability
 from utility.redis_tools import get_redis_conn
 
 
-from base.webqtlConfig import GENERATED_IMAGE_DIR, DEFAULT_PRIVILEGES
-
-from pprint import pformat as pf
+from base.webqtlConfig import GENERATED_IMAGE_DIR
 
 
 Redis = get_redis_conn()