Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing

10 files changed, 16 insertions, 11 deletions

diff --git a/test/requests/link_checker.py b/test/requests/link_checker.py
index a22c2b54..bc3b5861 100644
--- a/test/requests/link_checker.py
+++ b/test/requests/link_checker.py
@@ -117,6 +117,9 @@ def check_packaged_js_files(args_obj, parser):
         "/js/nvd3/nv.d3.min.css",
         "/js/qtip2/jquery.qtip.min.js",
         "/js/js_alt/md5.min.js",
+        "/js/jquery-ui/jquery-ui.min.js",
+        "/js/jquery-cookie/jquery.cookie.js",
+        "/js/jquery/jquery.min.js",
         "/js/typeahead/typeahead.bundle.js",
         "/js/underscore-string/underscore.string.min.js",
         "/js/js_alt/jstat.min.js",
@@ -138,9 +141,11 @@ def check_packaged_js_files(args_obj, parser):
         "/js/cytoscape-panzoom/cytoscape.js-panzoom.css",
         "/js/cytoscape-qtip/cytoscape-qtip.js",
         "/css/d3-tip/d3-tip.css",
+        "/js/zxcvbn-async/zxcvbn-async.min.js",
         "/js/javascript-twitter-post-fetcher/js/twitterFetcher_min.js",
         "/js/DataTables/images/sort_asc_disabled.png",
         "/js/DataTables/images/sort_desc_disabled.png",
+        "/js/shapiro-wilk/shapiro-wilk.js",
     ]
 
     print("Checking links")
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index bb618294..e368a4be 100644
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -238,7 +238,7 @@
       <!--</div>-->
     </div>
 
-    <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script>
+    <script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script>
     <script src="/static/packages/bootstrap/js/bootstrap.min.js"></script>
     <script>
             //http://stackoverflow.com/questions/11521763/bootstrap-scrollspy-not-working
@@ -250,9 +250,9 @@
               }
             })
     </script>
-    <script src="/static/new/js_external/jquery.cookie.js"></script>
+    <script src="{{ url_for('js', filename='jquery-cookie/jquery.cookie.js') }}" type="text/javascript"></script>
     <script type="text/javascript" src="/static/new/js_external/json2.js"></script>
-    <script src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.9.1/jquery-ui.min.js" type="text/javascript"></script>
+    <script src="{{ url_for('js', filename='jquery-ui/jquery-ui.min.js') }}" type="text/javascript"></script>
 
     <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='colorbox/jquery.colorbox-min.js') }}"></script>
     <!--<script type="text/javascript" src="/static/new/javascript/login.js"></script>-->
diff --git a/wqflask/wqflask/templates/loading.html b/wqflask/wqflask/templates/loading.html
index 9b335dfe..94e17724 100644
--- a/wqflask/wqflask/templates/loading.html
+++ b/wqflask/wqflask/templates/loading.html
@@ -38,7 +38,7 @@
     </div>
   </div>
 </form>
-<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script>
+<script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script>
 <script src="/static/packages/bootstrap/js/bootstrap.min.js"></script>
 <script  type="text/javascript">
 
diff --git a/wqflask/wqflask/templates/new_security/forgot_password_step2.html b/wqflask/wqflask/templates/new_security/forgot_password_step2.html
index 473fa377..5dc424e5 100644
--- a/wqflask/wqflask/templates/new_security/forgot_password_step2.html
+++ b/wqflask/wqflask/templates/new_security/forgot_password_step2.html
@@ -21,6 +21,6 @@
 
 {% block js %}
     {% include "new_security/_scripts.html" %}
-    <script type="text/javascript" src="/static/new/js_external/zxcvbn/zxcvbn-async.js"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='zxcvbn-async/zxcvbn-async.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/password_strength.js"></script>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/new_security/password_reset.html b/wqflask/wqflask/templates/new_security/password_reset.html
index 7110dc79..4e3ea59f 100644
--- a/wqflask/wqflask/templates/new_security/password_reset.html
+++ b/wqflask/wqflask/templates/new_security/password_reset.html
@@ -74,6 +74,6 @@
 {% block js %}
 
     {% include "new_security/_scripts.html" %}
-    <script type="text/javascript" src="/static/new/js_external/zxcvbn/zxcvbn-async.js"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='zxcvbn-async/zxcvbn-async.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/password_strength.js"></script>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/new_security/register_user.html b/wqflask/wqflask/templates/new_security/register_user.html
index 325d8aa5..2506f4ee 100644
--- a/wqflask/wqflask/templates/new_security/register_user.html
+++ b/wqflask/wqflask/templates/new_security/register_user.html
@@ -101,6 +101,6 @@
 {% block js %}
 
     {% include "new_security/_scripts.html" %}
-    <script type="text/javascript" src="/static/new/js_external/zxcvbn/zxcvbn-async.js"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='zxcvbn-async/zxcvbn-async.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/password_strength.js"></script>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/new_security/registered.html b/wqflask/wqflask/templates/new_security/registered.html
index e71d5598..eaed3ed0 100644
--- a/wqflask/wqflask/templates/new_security/registered.html
+++ b/wqflask/wqflask/templates/new_security/registered.html
@@ -20,6 +20,6 @@
 {% block js %}
 
     {% include "new_security/_scripts.html" %}
-    <script type="text/javascript" src="/static/new/js_external/zxcvbn/zxcvbn-async.js"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='zxcvbn-async/zxcvbn-async.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/password_strength.js"></script>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/new_security/thank_you.html b/wqflask/wqflask/templates/new_security/thank_you.html
index 459bd66a..f492fb51 100644
--- a/wqflask/wqflask/templates/new_security/thank_you.html
+++ b/wqflask/wqflask/templates/new_security/thank_you.html
@@ -19,6 +19,6 @@
 
 {% block js %}
     {% include "new_security/_scripts.html" %}
-    <script type="text/javascript" src="/static/new/js_external/zxcvbn/zxcvbn-async.js"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='zxcvbn-async/zxcvbn-async.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/password_strength.js"></script>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/new_security/verification_still_needed.html b/wqflask/wqflask/templates/new_security/verification_still_needed.html
index 3aa24e37..91768eb9 100644
--- a/wqflask/wqflask/templates/new_security/verification_still_needed.html
+++ b/wqflask/wqflask/templates/new_security/verification_still_needed.html
@@ -22,6 +22,6 @@
 
 {% block js %}
     {% include "new_security/_scripts.html" %}
-    <script type="text/javascript" src="/static/new/js_external/zxcvbn/zxcvbn-async.js"></script>
+    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='zxcvbn-async/zxcvbn-async.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/password_strength.js"></script>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html
index 32cf3c0a..c881eb76 100644
--- a/wqflask/wqflask/templates/show_trait.html
+++ b/wqflask/wqflask/templates/show_trait.html
@@ -133,7 +133,7 @@
     <script type="text/javascript" src="{{ url_for('js', filename='underscore-string/underscore.string.min.js') }}"></script>
     <script type="text/javascript" src="{{ url_for('js', filename='d3-tip/d3-tip.js') }}"></script>
     <script type="text/javascript" src="{{ url_for('js', filename='js_alt/jstat.min.js') }}"></script>
-    <script type="text/javascript" src="/static/new/js_external/shapiro-wilk.js"></script>
+    <script type="text/javascript" src="{{ url_for('js', filename='shapiro-wilk/shapiro-wilk.js') }}"></script>
     <script type="text/javascript" src="{{ url_for('js', filename='plotly/plotly.min.js') }}"></script>
     <script type="text/javascript" src="/static/new/javascript/colorbrewer.js"></script>