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authorAlexander Kabui2022-01-27 10:25:27 +0300
committerBonfaceKilz2022-02-09 08:49:56 +0300
commitb9d52198d2f1825fa6415625e7bbe4181de9a020 (patch)
treed483cc5f0435c254be29fd5ee897a9e43b1435e5
parent1b257e599bda536217c135f11427382c28ba8c38 (diff)
downloadgenenetwork2-b9d52198d2f1825fa6415625e7bbe4181de9a020.tar.gz
minor template fixes
-rw-r--r--wqflask/wqflask/templates/ctl_setup.html131
-rw-r--r--wqflask/wqflask/templates/gn3_ctl_results.html133
2 files changed, 99 insertions, 165 deletions
diff --git a/wqflask/wqflask/templates/ctl_setup.html b/wqflask/wqflask/templates/ctl_setup.html
index b9fe1656..caaf6300 100644
--- a/wqflask/wqflask/templates/ctl_setup.html
+++ b/wqflask/wqflask/templates/ctl_setup.html
@@ -1,86 +1,69 @@
{% extends "base.html" %}
{% block title %}CTL analysis{% endblock %}
-
-{% block content %} <!-- Start of body -->
+{% block content %}
+<!-- Start of body -->
<div class="container">
- {% if request.form['trait_list'].split(",")|length < 2 %}
- <div class="alert alert-danger" role="alert">
- <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
- <span class="sr-only">Error:</span>
- <h2>Too few traits as input</h2>
- Please make sure you select enough traits to perform CTL. Your collection needs to contain at least 2 different traits. You provided {{request.form['trait_list'].split(',')|length}} traits as input.
- </div>
- {% else %}
- <h1>CTL analysis</h1>
- CTL analysis is published as open source software, if you are using this method in your publications, please cite:<br><br>
- Arends D, Li Y, Brockmann GA, Jansen RC, Williams RW, Prins P<br>
- Correlation trait locus (CTL) mapping: Phenotype network inference subject to genotype.<br>
- The Journal of Open Source Software (2016)<br>
- Published in <a href="http://joss.theoj.org/papers/10.21105/joss.00087"><img src="http://joss.theoj.org/papers/10.21105/joss.00087/status.svg"></a>
- <br><br>
-
- <form class="col-md-8" action="/ctl_results" method="post" class="form-horizontal" id="ctl_form">
-
-
- <input type="hidden" name="trait_list" id="trait_list" value= "{{request.form['trait_list']}}">
-
- <div class="form-group row">
- <label for="Strategy" class="col-md-3 col-form-label col-form-label-sm">Strategy</label>
- <div class="col-md-9">
- <select class="form-control col-md-9" name="strategy" id="strategy">
- <option value="Exact">Exact</option>
- <option value="Full">Full</option>
- <option value="Pairwise">Pairwise</option>
- </select>
- </div>
+ {% if request.form['trait_list'].split(",")|length < 2 %} <div class="alert alert-danger" role="alert">
+ <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
+ <span class="sr-only">Error:</span>
+ <h2>Too few traits as input</h2>
+ Please make sure you select enough traits to perform CTL. Your collection needs to contain at least 2 different traits. You provided {{request.form['trait_list'].split(',')|length}} traits as input.
+</div>
+{% else %}
+<h1>CTL analysis</h1>
+CTL analysis is published as open source software, if you are using this method in your publications, please cite:<br><br>
+Arends D, Li Y, Brockmann GA, Jansen RC, Williams RW, Prins P<br>
+Correlation trait locus (CTL) mapping: Phenotype network inference subject to genotype.<br>
+The Journal of Open Source Software (2016)<br>
+Published in <a href="http://joss.theoj.org/papers/10.21105/joss.00087"><img src="http://joss.theoj.org/papers/10.21105/joss.00087/status.svg"></a>
+<br><br>
+<form class="col-md-8" action="/ctl_results" method="post" class="form-horizontal" id="ctl_form">
+ <input type="hidden" name="trait_list" id="trait_list" value="{{request.form['trait_list']}}">
+ <div class="form-group row">
+ <label for="Strategy" class="col-md-3 col-form-label col-form-label-sm">Strategy</label>
+ <div class="col-md-9">
+ <select class="form-control col-md-9" name="strategy" id="strategy">
+ <option value="Exact">Exact</option>
+ <option value="Full">Full</option>
+ <option value="Pairwise">Pairwise</option>
+ </select>
+ </div>
</div>
-
-
- <div class="form-group row">
- <label for="corType" class="col-md-3 col-form-label col-form-label-sm">Types of correlation coefficients:</label>
- <div class="col-md-9">
+ <div class="form-group row">
+ <label for="corType" class="col-md-3 col-form-label col-form-label-sm">Types of correlation coefficients:</label>
+ <div class="col-md-9">
<select class="form-control col-md-9" name="parametric" id="parametric">
- <option value="False">spearman</option>
- <option value="True">pearson</option>
- </select>
- </div>
-
+ <option value="False">spearman</option>
+ <option value="True">pearson</option>
+ </select>
</div>
-
-
- <div class="form-group row">
- <label for="Permutations" class="col-md-3 col-form-label col-form-label-sm">Number of permutation <span style="color:red;">(Used when strategy is Full or Pairwise)</span></label>
- <div class="col-md-9">
- <select class="form-control" name="nperm" id="nperm">
- <option value="100">100</option>
- <option value="1000" selected="selected">1000</option>
- <option value="10000">10000</option>
- </select>
- </div>
</div>
-
-
<div class="form-group row">
- <label for="Significance" class="col-md-3 col-form-label col-form-label-sm"> Significance level</label>
- <div class="col-md-9">
- <select class="form-control" name="significance" id="significance">
- <option value="0.1">0.1</option>
- <option value="0.05" selected="selected">0.05</option>
- <option value="0.001">0.001</option>
- </select>
- </div>
-
+ <label for="Permutations" class="col-md-3 col-form-label col-form-label-sm">Number of permutation <span style="color:red;">(Used when strategy is Full or Pairwise)</span></label>
+ <div class="col-md-9">
+ <select class="form-control" name="nperm" id="nperm">
+ <option value="100">100</option>
+ <option value="1000" selected="selected">1000</option>
+ <option value="10000">10000</option>
+ </select>
+ </div>
</div>
-
- <div class="form-group">
- <div class="text-center">
- <input type="submit" class="btn btn-primary" value="Run CTL using these settings" />
- </div>
+ <div class="form-group row">
+ <label for="Significance" class="col-md-3 col-form-label col-form-label-sm"> Significance level</label>
+ <div class="col-md-9">
+ <select class="form-control" name="significance" id="significance">
+ <option value="0.1">0.1</option>
+ <option value="0.05" selected="selected">0.05</option>
+ <option value="0.001">0.001</option>
+ </select>
+ </div>
+ </div>
+ <div class="form-group">
+ <div class="text-center">
+ <input type="submit" class="btn btn-primary" value="Run CTL using these settings" />
</div>
-
-
-
- </form>
+ </div>
+</form>
{% endif %}
</div>
-{% endblock %}
+{% endblock %} \ No newline at end of file
diff --git a/wqflask/wqflask/templates/gn3_ctl_results.html b/wqflask/wqflask/templates/gn3_ctl_results.html
index 08944b0f..ca45fe76 100644
--- a/wqflask/wqflask/templates/gn3_ctl_results.html
+++ b/wqflask/wqflask/templates/gn3_ctl_results.html
@@ -1,119 +1,72 @@
{% extends "base.html" %}
{% block title %}Ctl results{% endblock %}
{% block content %}
-
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css" integrity="sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm" crossorigin="anonymous">
-
<link REL="stylesheet" TYPE="text/css" href="{{ url_for('css', filename='bootstrap/css/bootstrap.css') }}" />
<link rel="stylesheet" href="https://cdn.datatables.net/1.11.3/css/jquery.dataTables.min.css">
-
<style type="text/css">
-
-
.carousel-control-next,
-.carousel-control-prev /*, .carousel-indicators */ {
+.carousel-control-prev
+
+/*, .carousel-indicators */
+ {
filter: invert(100%);
}
-
-
</style>
<div style="margin-top:10px">
<div>
-
<div style="text-align: center;">
- <h3>CTL/QTL Plots for Individual Traits</h3>
- <h4> {{ctl_plots|length}} phenotypes as input</h4>
-
+ <h3>CTL/QTL Plots for Individual Traits</h3>
+ <h4> {{ctl_plots|length}} phenotypes as input</h4>
+ </div>
+ <div id="carouselExampleControls" class="carousel slide" data-interval="false">
+ <div class="carousel-inner">
+ {% for ctl_plot in ctl_plots %}
+ <div class="item{% if loop.index == 1 %} active{% endif %}">
+ <img style="width:1000px;height: 600px;" class="center-block" src="data:image/jpeg;base64,{{ ctl_plot | safe }}" alt="First slide">
+ </div>
+ {% endfor %}
+ <a class="carousel-control-prev" href="#carouselExampleControls" role="button" data-slide="prev">
+ <span class="carousel-control-prev-icon" aria-hidden="true"></span>
+ <span class="sr-only">Previous</span>
+ </a>
+ <a class="carousel-control-next" href="#carouselExampleControls" role="button" data-slide="next">
+ <span class="carousel-control-next-icon" aria-hidden="true"></span>
+ <span class="sr-only">Next</span>
+ </a>
+ </div>
</div>
-
-
- <div id="carouselExampleControls" class="carousel slide" data-interval="false">
- <div class="carousel-inner">
-
- {% for ctl_plot in ctl_plots %}
-
-
- <div class="item{% if loop.index == 1 %} active{% endif %}">
- <img style="width:1000px;height: 600px;" class="center-block" src="data:image/jpeg;base64,{{ ctl_plot | safe }}" alt="First slide">
- </div>
-
- {% endfor %}
-
- <a class="carousel-control-prev" href="#carouselExampleControls" role="button" data-slide="prev">
- <span class="carousel-control-prev-icon" aria-hidden="true"></span>
- <span class="sr-only">Previous</span>
- </a>
- <a class="carousel-control-next" href="#carouselExampleControls" role="button" data-slide="next">
- <span class="carousel-control-next-icon" aria-hidden="true"></span>
- <span class="sr-only">Next</span>
- </a>
-
- </div>
-
-</div>
-
-
</div>
-
- <div >
-
+ <div>
<div style="text-align:center;">
- <h2 >Ctl line plot</h2>
- <h4>Plot the CTL for genome-wide CTL on all traits (the output of CTLscan).</h4>
-
+ <h2>Ctl line plot</h2>
+ <h4>Plot the CTL for genome-wide CTL on all traits (the output of CTLscan).</h4>
</div>
-
- <div class="row">
- <div class="col-8">
-
-
- <img style="width:100%;height: 600px;" class="center-block" src="data:image/jpeg;base64,{{ image_data | safe }}">
-
-
- </div>
-
-
-
- <div class= "col-4">
-
- <ol style="height: 100%;display:flex;flex-direction: column;align-items: center;justify-content: center;">
-
- {% for trait in phenotypes %}
-
-
- {% set trait_data = trait.split(':') %}
-
-
- <li><a href="/show_trait?trait_id={{trait_data[0]}}&dataset={{trait_data[1]}}">{{trait_data[0]}}</a></li>
-
-
- {% endfor %}
- </ol>
- </div>
-
+ <div class="row">
+ <div class="col-8">
+ <img style="width:100%;height: 600px;" class="center-block" src="data:image/jpeg;base64,{{ image_data | safe }}">
+ </div>
+ <div class="col-4">
+ <ol style="height: 100%;display:flex;flex-direction: column;align-items: center;justify-content: center;">
+ {% for trait in phenotypes %}
+ {% set trait_data = trait.split(':') %}
+ <li><a href="/show_trait?trait_id={{trait_data[0]}}&dataset={{trait_data[1]}}">{{trait_data[0]}}</a></li>
+ {% endfor %}
+ </ol>
+ </div>
</div>
-
</div>
<h2 style="text-align:center">Significant CTL </h2>
<table id="significance" width="80vw"></table>
-
<div style="text-align: center;margin-top: 20px;">
<h3 style="text-align:center;">Network figure</h3>
-
- <div style="margin-top: 20px;">
-
-<p>Use tools like cytoscape to visualize the network</p>
-
-<a href="/ctl_network_files/{{network_file_name}}/sif" class="btn btn-secondary btn-lg mx-2">Download Sif file</a>
-
-<a href="/ctl_network_files/{{network_file_name}}/nodes" class="btn btn-secondary btn-lg mx-2">Download Node file</a>
+ <div style="margin-top: 20px;">
+ <p>Use tools like cytoscape to visualize the network</p>
+ <a href="/ctl_network_files/{{network_file_name}}/sif" class="btn btn-secondary btn-lg mx-2">Download Sif file</a>
+ <a href="/ctl_network_files/{{network_file_name}}/nodes" class="btn btn-secondary btn-lg mx-2">Download Node file</a>
</div>
</div>
-
-
-
</div>
-
<script src="https://code.jquery.com/jquery-3.2.1.slim.min.js" integrity="sha384-KJ3o2DKtIkvYIK3UENzmM7KCkRr/rE9/Qpg6aAZGJwFDMVNA/GpGFF93hXpG5KkN" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.12.9/umd/popper.min.js" integrity="sha384-ApNbgh9B+Y1QKtv3Rn7W3mgPxhU9K/ScQsAP7hUibX39j7fakFPskvXusvfa0b4Q" crossorigin="anonymous"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/js/bootstrap.min.js" integrity="sha384-JZR6Spejh4U02d8jOt6vLEHfe/JQGiRRSQQxSfFWpi1MquVdAyjUar5+76PVCmYl" crossorigin="anonymous"></script>
@@ -121,8 +74,6 @@
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/scroller/js/dataTables.scroller.min.js') }}"></script>
<script type="text/javascript">
-
-
let { data_set_rows, col_names } = {{ significance_data | safe }}