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| author | zsloan | 2021-02-23 21:43:07 +0000 |
|---|---|---|
| committer | zsloan | 2021-02-23 21:43:07 +0000 |
| commit | b6f6c9b473802997be152e6962879175827c014d (patch) | |
| tree | dd15536f036ca976826f436f680cdc41dddcbc3b | |
| parent | c4d315831dc1d59841a2ebc30bd073bc8d27476b (diff) | |
| download | genenetwork2-b6f6c9b473802997be152e6962879175827c014d.tar.gz | |
This should fix the issue with Haplotype Analyst sample names/values not being displayed correctly
| -rw-r--r-- | wqflask/wqflask/marker_regression/display_mapping_results.py | 28 |
1 files changed, 9 insertions, 19 deletions
diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py index 47c64a69..7e9deb9e 100644 --- a/wqflask/wqflask/marker_regression/display_mapping_results.py +++ b/wqflask/wqflask/marker_regression/display_mapping_results.py @@ -1494,9 +1494,11 @@ class DisplayMappingResults(object): thisTrait = self.this_trait + samplelist = list(self.genotype.prgy) + smd=[] for sample in self.sample_vals_dict.keys(): - if self.sample_vals_dict[sample] != "x": + if self.sample_vals_dict[sample] != "x" and sample in samplelist: temp = GeneralObject(name=sample, value=float(self.sample_vals_dict[sample])) smd.append(temp) else: @@ -1505,8 +1507,6 @@ class DisplayMappingResults(object): smd.sort(key = lambda A: A.value) smd.reverse() - samplelist = list(self.genotype.prgy) - oldgeneEndPix = -1 #Initializing plotRight, error before plotRight = xRightOffset @@ -1608,11 +1608,8 @@ class DisplayMappingResults(object): if (plotbxd == 1): ind = 0 - counter = 0 - for item in smd: - counter = counter + 1 - if item.name == samplelist[k]: - ind = counter + if samplelist[k] in [item.name for item in smd]: + ind = [item.name for item in smd].index(samplelist[k]) maxind=max(ind, maxind) @@ -1691,27 +1688,20 @@ class DisplayMappingResults(object): plotbxd=1 if (plotbxd == 1): - - ind = 0 - counter = 0 - expr = 0 - for item in smd: - counter = counter + 1 - if item.name == samplelist[j]: - ind = counter - expr = item.value + ind = [item.name for item in smd].index(samplelist[j]) - 1 + expr = smd[ind].value # Place where font is hardcoded im_drawer.text( text="%s" % (samplelist[j]), xy=((xLeftOffset + plotWidth + 10), - geneYLocation+8+2*ind*self.EACH_GENE_HEIGHT*zoom), + geneYLocation+11+2*ind*self.EACH_GENE_HEIGHT*zoom), font=ImageFont.truetype(font=VERDANA_FILE, size=12), fill=BLACK) im_drawer.text( text="%2.2f" % (expr), xy=((xLeftOffset + plotWidth + 60), - geneYLocation+8+2*ind*self.EACH_GENE_HEIGHT*zoom), + geneYLocation+11+2*ind*self.EACH_GENE_HEIGHT*zoom), font=ImageFont.truetype(font=VERDANA_FILE, size=12), fill=BLACK) |