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| author | zsloan | 2022-12-12 21:20:41 +0000 |
|---|---|---|
| committer | zsloan | 2022-12-12 21:21:08 +0000 |
| commit | a2796900a34056cfba2dfa4c995764ea60ff8e45 (patch) | |
| tree | ea7319b76d184dbb008602377498c96475241514 | |
| parent | 8b8397fb5ddf66492d5fb6c085860374d2c3625d (diff) | |
| download | genenetwork2-a2796900a34056cfba2dfa4c995764ea60ff8e45.tar.gz | |
Change logic in compute_correlation_rust so that it doesn't re-run the top 500 correlations for sample correlations of non-probeset traits (which it was previously doing and caused many wrong results
| -rw-r--r-- | wqflask/wqflask/correlation/rust_correlation.py | 14 |
1 files changed, 8 insertions, 6 deletions
diff --git a/wqflask/wqflask/correlation/rust_correlation.py b/wqflask/wqflask/correlation/rust_correlation.py index f1294dfb..5ae5e89c 100644 --- a/wqflask/wqflask/correlation/rust_correlation.py +++ b/wqflask/wqflask/correlation/rust_correlation.py @@ -361,12 +361,14 @@ def compute_correlation_rust( if should_compute_all: - if corr_type == "sample" and this_dataset.type == "ProbeSet": - - top_a = compute_top_n_tissue( - target_dataset, this_trait, results, method) - - top_b = compute_top_n_lit(results, target_dataset, this_trait) + if corr_type == "sample": + if this_dataset.type == "ProbeSet": + top_a = compute_top_n_tissue( + target_dataset, this_trait, results, method) + + top_b = compute_top_n_lit(results, target_dataset, this_trait) + else: + pass elif corr_type == "lit": |