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authorBonfaceKilz2021-04-29 15:25:18 +0300
committerBonfaceKilz2021-04-29 15:25:18 +0300
commit99f8349b8cda4a3b17380c913207fc8395481653 (patch)
tree353f548b0d84485b195d8b9189c02c1397364302
parent43ed9d7e5c22de2a457457e75b8153f6c2e1488c (diff)
downloadgenenetwork2-99f8349b8cda4a3b17380c913207fc8395481653.tar.gz
wqflask: Add new js file for processing menu entries
* wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js: New file. Copy of dataset_select_menu_orig.js that will later modified... * wqflask/wqflask/templates/edit_trait.html: Use :point_up:.
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js253
-rw-r--r--wqflask/wqflask/templates/edit_trait.html4
2 files changed, 255 insertions, 2 deletions
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js
new file mode 100644
index 00000000..1d4a94d9
--- /dev/null
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js
@@ -0,0 +1,253 @@
+var apply_default, check_search_term, dataset_info, group_info, make_default, open_window, populate_dataset, populate_group, populate_species, populate_type, process_json, redo_dropdown;
+process_json = function(data) {
+ window.jdata = data;
+ populate_species();
+ if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
+ return apply_default();
+ }
+};
+
+$.ajax('/api/v_pre1/gen_dropdown', {
+ dataType: 'json',
+ success: process_json
+});
+
+populate_species = function() {
+ var species_list;
+ species_list = this.jdata.species;
+ redo_dropdown($('#species'), species_list);
+ return populate_group();
+};
+window.populate_species = populate_species;
+populate_group = function() {
+ var group_list, species;
+ console.log("in populate group");
+ species = $('#species').val();
+ group_list = this.jdata.groups[species];
+ for (_i = 0, _len = group_list.length; _i < (_len - 1); _i++) {
+ if (group_list[_i][0] == "BXD300"){
+ group_list.splice(_i, 1)
+ }
+ }
+ redo_dropdown($('#group'), group_list);
+ if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
+ return populate_type();
+ }
+};
+window.populate_group = populate_group;
+populate_type = function() {
+ var group, species, type_list;
+ console.log("in populate type");
+ species = $('#species').val();
+ group = $('#group').val();
+ type_list = this.jdata.types[species][group];
+ redo_dropdown($('#type'), type_list);
+ return populate_dataset();
+};
+window.populate_type = populate_type;
+populate_dataset = function() {
+ var dataset_list, group, species, type;
+ console.log("in populate dataset");
+ species = $('#species').val();
+ group = $('#group').val();
+ type = $('#type').val();
+ console.log("sgt:", species, group, type);
+ dataset_list = this.jdata.datasets[species][group][type];
+ console.log("pop_dataset:", dataset_list);
+ return redo_dropdown($('#dataset'), dataset_list);
+};
+window.populate_dataset = populate_dataset;
+redo_dropdown = function(dropdown, items) {
+ var item, _i, _len, _results;
+ console.log("in redo:", dropdown, items);
+ dropdown.empty();
+ _results = [];
+
+ if (dropdown.attr('id') == "group"){
+ group_family_list = [];
+ for (_i = 0, _len = items.length; _i < _len; _i++) {
+ item = items[_i];
+ group_family = item[2].toString().split(":")[1]
+ group_family_list.push([item[0], item[1], group_family])
+ }
+
+ current_family = ""
+ this_opt_group = null
+ for (_i = 0, _len = group_family_list.length; _i < _len; _i++) {
+ item = group_family_list[_i];
+ if (item[2] != "None" && current_family == ""){
+ current_family = item[2]
+ this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
+ this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+ } else if (current_family != "" && item[2] == current_family){
+ this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+ if (_i == group_family_list.length - 1){
+ _results.push(dropdown.append(this_opt_group))
+ }
+ } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
+ current_family = item[2]
+ _results.push(dropdown.append(this_opt_group))
+ this_opt_group = $("<optgroup label=\"" + current_family + "\">")
+ this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+ if (_i == group_family_list.length - 1){
+ _results.push(dropdown.append(this_opt_group))
+ }
+ } else if (current_family != "" && this_opt_group != null && item[2] == "None"){
+ _results.push(dropdown.append(this_opt_group))
+ current_family = ""
+ _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+ } else {
+ _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+ }
+ }
+ } else if (dropdown.attr('id') == "type"){
+ type_family_list = [];
+ for (_i = 0, _len = items.length; _i < _len; _i++) {
+ item = items[_i];
+ type_family_list.push([item[0], item[1], item[2]])
+ }
+
+ current_family = ""
+ this_opt_group = null
+ for (_i = 0, _len = type_family_list.length; _i < _len; _i++) {
+ item = type_family_list[_i];
+ if (item[2] != "None" && current_family == ""){
+ current_family = item[2]
+ this_opt_group = $("<optgroup label=\"" + item[2] + "\">")
+ this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+ if (_i == type_family_list.length - 1){
+ _results.push(dropdown.append(this_opt_group))
+ }
+ } else if (current_family != "" && item[2] == current_family){
+ this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+ if (_i == type_family_list.length - 1){
+ _results.push(dropdown.append(this_opt_group))
+ }
+ } else if (current_family != "" && item[2] != current_family && item[2] != "None"){
+ current_family = item[2]
+ _results.push(dropdown.append(this_opt_group))
+ this_opt_group = $("<optgroup label=\"" + current_family + "\">")
+ this_opt_group.append($("<option />").val(item[0]).text(item[1]));
+ if (_i == type_family_list.length - 1){
+ _results.push(dropdown.append(this_opt_group))
+ }
+ } else {
+ _results.push(dropdown.append(this_opt_group))
+ current_family = ""
+ _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+ }
+ }
+ } else {
+ for (_i = 0, _len = items.length; _i < _len; _i++) {
+ item = items[_i];
+ if (item.length > 2){
+ _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2])));
+ } else {
+ _results.push(dropdown.append($("<option />").val(item[0]).text(item[1])));
+ }
+ }
+ }
+
+ return _results;
+};
+$('#species').change((function(_this) {
+ return function() {
+ return populate_group();
+ };
+})(this));
+$('#group').change((function(_this) {
+ return function() {
+ if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option)
+ return populate_type();
+ }
+ else {
+ return false
+ }
+ };
+})(this));
+$('#type').change((function(_this) {
+ return function() {
+ return populate_dataset();
+ };
+})(this));
+open_window = function(url, name) {
+ var options;
+ options = "menubar=yes,toolbar=yes,titlebar=yes,location=yes,resizable=yes,status=yes,scrollbars=yes,directories=yes,width=900";
+ return open(url, name, options).focus();
+};
+group_info = function() {
+ var group, species, url;
+ species = $('#species').val();
+ group = $('#group').val();
+ url = "http://gn1.genenetwork.org/" + species + "Cross.html#" + group;
+ return open_window(url, "Group Info");
+};
+$('#group_info').click(group_info);
+dataset_info = function() {
+ var dataset, url;
+ accession_id = $('#dataset option:selected').data("id");
+ name = $('#dataset option:selected').val();
+ if (accession_id != "None") {
+ url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id + "&InfoPageName=" + name;
+ } else {
+ url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=" + name;
+ }
+ return open_window(url, "Dataset Info");
+};
+$('#dataset_info').click(dataset_info);
+make_default = function() {
+ var holder, item, jholder, _i, _len, _ref;
+ alert("The current settings are now your default.")
+ holder = {};
+ _ref = ['species', 'group', 'type', 'dataset'];
+ for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+ item = _ref[_i];
+ holder[item] = $("#" + item).val();
+ }
+ jholder = JSON.stringify(holder);
+ return $.cookie('search_defaults', jholder, {
+ expires: 365
+ });
+};
+apply_default = function() {
+ var defaults, item, populate_function, _i, _len, _ref, _results;
+ defaults = $.cookie('search_defaults');
+ if (defaults) {
+ defaults = $.parseJSON(defaults);
+ } else {
+ defaults = {
+ species: "mouse",
+ group: "BXD",
+ type: "Hippocampus mRNA",
+ dataset: "HC_M2_0606_P"
+ };
+ }
+
+ _ref = [['species', 'group'], ['group', 'type'], ['type', 'dataset'], ['dataset', null]];
+ _results = [];
+ for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+ item = _ref[_i];
+ $("#" + item[0]).val(defaults[item[0]]);
+ if (item[1]) {
+ populate_function = "populate_" + item[1];
+ console.log("Calling:", populate_function);
+ _results.push(window[populate_function]());
+ } else {
+ _results.push(void 0);
+ }
+ }
+ return _results;
+};
+check_search_term = function() {
+ var or_search_term, and_search_term;
+ or_search_term = $('#or_search').val();
+ and_search_term = $('#and_search').val();
+ console.log("or_search_term:", or_search_term);
+ console.log("and_search_term:", and_search_term);
+ if (or_search_term === "" && and_search_term === "") {
+ alert("Please enter one or more search terms or search equations.");
+ return false;
+ }
+};
+$("#make_default").click(make_default);
+$("#btsearch").click(check_search_term);
diff --git a/wqflask/wqflask/templates/edit_trait.html b/wqflask/wqflask/templates/edit_trait.html
index 14f44698..b9a31fc6 100644
--- a/wqflask/wqflask/templates/edit_trait.html
+++ b/wqflask/wqflask/templates/edit_trait.html
@@ -78,8 +78,8 @@
{%endblock%}
-{% block js %}
- <script src="/static/new/javascript/dataset_select_menu_orig.js"></script>
+ {% block js %}
+ <script src="/static/new/javascript/dataset_select_menu_edit_trait.js"></script>
<script>
gn_server_url = "{{ gn_server_url }}";
</script>