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authorBonfaceKilz2020-07-27 14:32:26 +0300
committerBonfaceKilz2020-07-27 14:32:26 +0300
commit5cad720187b3c53b6d64c64d45be4bc020eed52d (patch)
tree9917c77dc38c41ac543404fcd83e4a352afa3065
parentd63e7554d6dfce4e80c2570667a0fa371235beb7 (diff)
downloadgenenetwork2-5cad720187b3c53b6d64c64d45be4bc020eed52d.tar.gz
Add test case for empty redis instance for DatasetType
* wqflask/tests/base/test_data_set.py(tests): Check correct results are returned when Redis is empty * wqflask/tests/base/data.py(tests): New file. Adds json test data.
-rw-r--r--wqflask/tests/base/data.py110
-rw-r--r--wqflask/tests/base/test_data_set.py16
2 files changed, 125 insertions, 1 deletions
diff --git a/wqflask/tests/base/data.py b/wqflask/tests/base/data.py
new file mode 100644
index 00000000..06a5a989
--- /dev/null
+++ b/wqflask/tests/base/data.py
@@ -0,0 +1,110 @@
+gen_menu_json = """
+{
+ "datasets": {
+ "human": {
+ "HLC": {
+ "Liver mRNA": [
+ [
+ "320",
+ "HLC_0311",
+ "GSE9588 Human Liver Normal (Mar11) Both Sexes"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "635",
+ "HLCPublish",
+ "HLC Published Phenotypes"
+ ]
+ ]
+ }
+ },
+ "mouse": {
+ "BXD": {
+ "Genotypes": [
+ [
+ "600",
+ "BXDGeno",
+ "BXD Genotypes"
+ ]
+ ],
+ "Hippocampus mRNA": [
+ [
+ "112",
+ "HC_M2_0606_P",
+ "Hippocampus Consortium M430v2 (Jun06) PDNN"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "602",
+ "BXDPublish",
+ "BXD Published Phenotypes"
+ ]
+ ]
+ }
+ }
+ },
+ "groups": {
+ "human": [
+ [
+ "HLC",
+ "Liver: Normal Gene Expression with Genotypes (Merck)",
+ "Family:None"
+ ]
+ ],
+ "mouse": [
+ [
+ "BXD",
+ "BXD",
+ "Family:None"
+ ]
+ ]
+ },
+ "species": [
+ [
+ "human",
+ "Human"
+ ],
+ [
+ "mouse",
+ "Mouse"
+ ]
+ ],
+ "types": {
+ "human": {
+ "HLC": [
+ [
+ "Phenotypes",
+ "Traits and Cofactors",
+ "Phenotypes"
+ ],
+ [
+ "Liver mRNA",
+ "Liver mRNA",
+ "Molecular Trait Datasets"
+ ]
+ ]
+ },
+ "mouse": {
+ "BXD": [
+ [
+ "Phenotypes",
+ "Traits and Cofactors",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "DNA Markers and SNPs",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus mRNA",
+ "Hippocampus mRNA",
+ "Molecular Trait Datasets"
+ ]
+ ]
+ }
+ }
+}
+"""
diff --git a/wqflask/tests/base/test_data_set.py b/wqflask/tests/base/test_data_set.py
index 74799e49..835d786a 100644
--- a/wqflask/tests/base/test_data_set.py
+++ b/wqflask/tests/base/test_data_set.py
@@ -4,7 +4,7 @@ import unittest
import mock
from wqflask import app
-
+from data import gen_menu_json
from base.data_set import DatasetType
@@ -43,3 +43,17 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(DatasetType(redis_mock)
("All Phenotypes"), "Publish")
+ @mock.patch('base.data_set.requests.get')
+ def test_data_set_type_with_empty_redis(self, request_mock):
+ """Test that DatasetType returns correctly if the Redis Instance is empty and
+ the name variable exists in the dictionary
+
+ """
+ with app.app_context():
+ request_mock.return_value.content = gen_menu_json
+ redis_mock = mock.Mock()
+ redis_mock.get.return_value = None
+ data_set = DatasetType(redis_mock)
+ self.assertEqual(data_set("BXDGeno"), "Geno")
+ self.assertEqual(data_set("BXDPublish"), "Publish")
+ self.assertEqual(data_set("HLC_0311"), "ProbeSet")