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authorzsloan2024-06-26 21:42:12 +0000
committerAlexander_Kabui2024-08-28 15:02:45 +0300
commit5753be342c10a7d2a23ffd7ab8cd8238732edd95 (patch)
treeca721621f5a5818bcb87a887d9fa9241a9aec611
parent350b4b8c84ed680d82dbd616bb69bae919fce232 (diff)
downloadgenenetwork2-5753be342c10a7d2a23ffd7ab8cd8238732edd95.tar.gz
Fix LRS/LOD Xapian searches when there are 5 terms (where position range is included)
-rw-r--r--gn2/wqflask/search_results.py12
1 files changed, 6 insertions, 6 deletions
diff --git a/gn2/wqflask/search_results.py b/gn2/wqflask/search_results.py
index accc3a53..357b3f09 100644
--- a/gn2/wqflask/search_results.py
+++ b/gn2/wqflask/search_results.py
@@ -26,7 +26,7 @@ from gn2.utility.hmac import hmac_creation
 from gn2.utility.tools import get_setting, GN2_BASE_URL, GN3_LOCAL_URL
 from gn2.utility.type_checking import is_str
 
-MAX_SEARCH_RESULTS = 20000 # Max number of search results, passed to Xapian search
+MAX_SEARCH_RESULTS = 20000 # Max number of search results, passed to Xapian search (this needs to match the value in GN3!)
 
 class SearchResultPage:
     #maxReturn = 3000
@@ -517,14 +517,14 @@ def create_xapian_term(dataset, term):
             return xapian_term + f"author:{search_term[0]}"
         case 'LRS':
             xapian_term += f"peak:{search_term[0]}..{search_term[1]}"
-            if len(term) == 5:
-                xapian_term += f"peakchr:{search_term[2].lower().replace('chr', '')} AND peakmb:{float(search_term[3])*10**6}..{float(search_term[4])*10**6}"
+            if len(search_term) == 5:
+                xapian_term += f" AND peakchr:{search_term[2].lower().replace('chr', '')} AND peakmb:{float(search_term[3])}..{float(search_term[4])}"
             return xapian_term
         case 'LOD': # Basically just LRS search but all values are multiplied by 4.61
             xapian_term += f"peak:{float(search_term[0]) * 4.61}..{float(search_term[1]) * 4.61}"
-            if len(term) == 5:
-                xapian_term += f"peakchr:{search_term[2].lower().replace('chr', '')} AND "
-                xapian_term += f"peakmb:{float(search_term[3]) * 4.61}..{float(search_term[4]) * 4.61}"
+            if len(search_term) == 5:
+                xapian_term += f" AND peakchr:{search_term[2].lower().replace('chr', '')}"
+                xapian_term += f" AND peakmb:{float(search_term[3])}..{float(search_term[4])}"
             return xapian_term
         case None:
             return xapian_term + f"{search_term[0]}"