Figured out how those flask templates work, analysis broken down into 3 parts, WGCNA R package installs and loads succesfully in the gn2-docker image

2 files changed, 5 insertions, 2 deletions

diff --git a/wqflask/wqflask/templates/wgcna_results.html b/wqflask/wqflask/templates/wgcna_results.html
index 2226f90c..5d654e94 100644
--- a/wqflask/wqflask/templates/wgcna_results.html
+++ b/wqflask/wqflask/templates/wgcna_results.html
@@ -4,6 +4,7 @@
 {% block content %} <!-- Start of body -->
   <div>
     <h1>WGCNA Results</h1>
+    {{result}}
   </div>
 {% endblock %}
 
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index cd186078..cb7caf51 100755
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -180,8 +180,10 @@ def help():
 @app.route("/wgcna", methods=('POST',))
 def wcgna():
     print("In wgcna, request.form is:", request.form)
-    template_vars = wgcna_analysis.WGCNA(request.form)
-    return render_template("wgcna_results.html")
+    wgcna = wgcna_analysis.WGCNA()                                  # Start R, load the package and pointers and create the analysis
+    wgcnaA = wgcna.run_analysis(request.form)                       # Start the analysis, a wgcnaA object should be a separate long running thread
+    result = wgcna.process_results(wgcnaA)                          # After the analysis is finished store the result
+    return render_template("wgcna_results.html", **result)          # Display them using the template
 
 @app.route("/news")
 def news_route():