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authorBonfaceKilz2021-05-20 23:22:49 +0300
committerBonfaceKilz2021-05-26 20:01:28 +0300
commit2de0bdc7c3350dacf14218bb1a1e4721ac4d1237 (patch)
tree20c6e43415818ae58395b0f723507207f090553b
parent41408d44d23dc93afc85f8428fa2f6944fc902bb (diff)
downloadgenenetwork2-2de0bdc7c3350dacf14218bb1a1e4721ac4d1237.tar.gz
wqflask: views: Add extra endpoint to display individual trait edit
* wqflask/wqflask/views.py (show_edit_trait_page): New function/ end-point.
-rw-r--r--wqflask/wqflask/views.py33
1 files changed, 28 insertions, 5 deletions
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 4834ee63..51266ada 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -21,6 +21,7 @@ import base64
import array
import sqlalchemy
from wqflask import app
+from flask import current_app
from flask import g
from flask import Response
from flask import request
@@ -414,13 +415,35 @@ def submit_trait_form():
version=GN_VERSION)
-@app.route("/edit_trait_form")
-def edit_trait_page():
- species_and_groups = get_species_groups()
+@app.route("/trait/<name>/edit/<inbred_set_id>")
+def show_edit_trait_page(name, inbred_set_id):
+ from gn3.db.phenotypes import (Phenotype,
+ PublishXRef,
+ Publication,
+ fetchone)
+ import MySQLdb
+ conn = MySQLdb.Connect(db=current_app.config.get("DB_NAME"),
+ user=current_app.config.get("DB_USER"),
+ passwd=current_app.config.get("DB_PASS"),
+ host=current_app.config.get("DB_HOST"))
+ publish_xref = fetchone(
+ conn=conn,
+ table="PublishXRef",
+ where=PublishXRef(id_=name,
+ inbred_set_id=inbred_set_id))
+ phenotype_ = fetchone(
+ conn=conn,
+ table="Phenotype",
+ where=Phenotype(id_=publish_xref.phenotype_id))
+ publication_ = fetchone(
+ conn=conn,
+ table="Publication",
+ where=Publication(id_=publish_xref.publication_id))
return render_template(
"edit_trait.html",
- species_and_groups=species_and_groups,
- gn_server_url=GN_SERVER_URL,
+ publish_xref=publish_xref,
+ phenotype=phenotype_,
+ publication=publication_,
version=GN_VERSION)